mRNA_L-elsbetiae_contig1757.4951.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1757.4951.1
Unique NamemRNA_L-elsbetiae_contig1757.4951.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1757.4951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1757contigL-elsbetiae_contig1757:5638..7460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size865
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1757.4951.1prot_L-elsbetiae_contig1757.4951.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1757 5790..7236 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.4718204-UTR-L-elsbetiae_contig1757:5637..57891622815731.4718204-UTR-L-elsbetiae_contig1757:5637..5789Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1757 5638..5789 -
1691683066.197565-UTR-L-elsbetiae_contig1757:5637..57891691683066.197565-UTR-L-elsbetiae_contig1757:5637..5789Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1757 5638..5789 -
1622815731.5267406-UTR-L-elsbetiae_contig1757:7236..74601622815731.5267406-UTR-L-elsbetiae_contig1757:7236..7460Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1757 7237..7460 -
1691683066.2378204-UTR-L-elsbetiae_contig1757:7236..74601691683066.2378204-UTR-L-elsbetiae_contig1757:7236..7460Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1757 7237..7460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.485017-CDS-L-elsbetiae_contig1757:5789..60131622815731.485017-CDS-L-elsbetiae_contig1757:5789..6013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 5790..6013 -
1691683066.210529-CDS-L-elsbetiae_contig1757:5789..60131691683066.210529-CDS-L-elsbetiae_contig1757:5789..6013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 5790..6013 -
1622815731.4991012-CDS-L-elsbetiae_contig1757:6459..66451622815731.4991012-CDS-L-elsbetiae_contig1757:6459..6645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 6460..6645 -
1691683066.2198627-CDS-L-elsbetiae_contig1757:6459..66451691683066.2198627-CDS-L-elsbetiae_contig1757:6459..6645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 6460..6645 -
1622815731.5135677-CDS-L-elsbetiae_contig1757:7157..72361622815731.5135677-CDS-L-elsbetiae_contig1757:7157..7236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 7158..7236 -
1691683066.228946-CDS-L-elsbetiae_contig1757:7157..72361691683066.228946-CDS-L-elsbetiae_contig1757:7157..7236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 7158..7236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1757.4951.1

>prot_L-elsbetiae_contig1757.4951.1 ID=prot_L-elsbetiae_contig1757.4951.1|Name=mRNA_L-elsbetiae_contig1757.4951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
MCLARTLCMHRQKRTCGPTKAANNTYAAWKGKRRKKPRRPPHFGNCQWKN
TPRRTLKGNGCARAARYLPRVKRWRGGTSSSTQNPTNTRNGYGGTEARVC
RSRCCPFTQEHPSPRRKRTEILRPRRRRRGRGHPCSPPREKAPLERVERR
RAGVRETTMDAR*
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mRNA from alignment at L-elsbetiae_contig1757:5638..7460-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1757.4951.1 ID=mRNA_L-elsbetiae_contig1757.4951.1|Name=mRNA_L-elsbetiae_contig1757.4951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1823bp|location=Sequence derived from alignment at L-elsbetiae_contig1757:5638..7460- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGGTTCGGCTCCCTGTTGCTGTACACACACACAGCTAGACAAACCCC
GCGGTGGCGCGGACACCTCTGACATGACGGACACCCCGAGCCCAAGCTCG
TCTTCAGTACCTCCTTCCACTAGCGAAGGACCCATTGCGGCTGCTGGAGG
GGCTTCTACCCCGCGCGTCGCCCGTCTCGCGGCATGGTCGGAGGACAAAG
GTTGGGTGTGCTGCGCGTGCACTCATGTGTTTGGCAAGAACACTGTGCAT
GCATCGGCAGAAGAGAACTTGCGGGCCCACGAAGGCAGCAAACAACACCT
ACGGTGAGTGGCTTTAGCTTTGGCAACCGTGATTTTTTTACTGGAGGTTC
ACACAGCACACAGGCAGGCACAGGCTGTTGTTCTGATCCGCGGTGGTCGG
GCCAACTTGGTCGGGCACATGTGGCATGTGCGTACCGTTGACCTCAGCGG
CCAGTACACAGCATGCCAATGAAGTCGTGCATTGGTGCGACCCCTCTCCT
CTCAGACGTTGGTATTGTGCTGTGTAGGACGGCGGGTATGAACCTGTGGT
TTGTTTAGAAGAGTGGTAACACAAAGGGCACACACACGCACACATGACTC
TGAATACCACCCCCCCCCGATTTGTACGGGAAAATCTAGATGCTTGGTAA
ACCCGCTCAAGAACTTCAAGCGTTTTCATCCGCTGCCACCACACCTAACG
TAGCGATACTTGCGATGCCCAAAAGGTTGAAGGACGAAAGGCGTTTAATT
AACTCGTTGAGTAATTTGACAAGAAGCACATGCCATCTTTCTTTCGTCCG
CAATCCCCGTCACAGCGGCGTGGAAAGGAAAAAGAAGAAAAAAGCCGAGG
CGCCCCCCACACTTCGGAAACTGCCAGTGGAAGAATACGCCAAGAAGAAC
GCTAAAGGGGAATGGGTGTGCACGTGCGGCAAGATATTTGCCAAGGGTGA
AACGCTGGCGCGGGGGAACATCGAGCAGCACACAAAATCCGACGAACACA
AGTAAGATCGGTGATGTCCTTGGCCACGGTCGGTGTGTAGCTGTCGGTTG
GAGACCAGCAACTTCGTCGTACTTCTTGCGAAGGAGGTCTTTTTTTCACA
AAAACCCTTGCGCAAGCCATTGTAGAAGGTACTGTTGGCTGCTCCAACTT
GCTTGCTCCAGCATTTTTTAATTGCGTCAAATTGCATAAAGAAATACTGT
AGGTGGATTTAAGATAGCATAGAAACTTTCCAGCAACCCTGTTCTTGAGC
CGACGGAGTCACGTCTCTGACAAAGTGGGGAGGGTCGGTCTTCAATTTAG
TGATTTTCTTGCAAAAGAAAGAAGAGGAAACCGCTCGACCATGGCTGAGA
TGCCGCGCTGTACCGTGCCATCGTAGCTTATTATACCATGCCGTGCCACT
GTTTCCCCCTTCGTCATCGATCCATCTTCTTCGTCGGGCGCTTGCAGGAA
ACGGTTACGGAGGGACGGAGGCACGAGTATGCAGAAGTCGATGTTGTCCT
TTTACACAAGAGCACCCAAGCCCCAGAAGGAAGCGGACGGAGATCCTGCG
GCCACGTCGGAGACGCCGCGGGCGGGGTCATCCCTGCTCGCCACCGAGGG
AGAAGGCCCCCCTCGAGCGGGTGGAACGGCGTCGAGCGGGGGTGCGGGAG
ACGACGATGGATGCGAGGTAGTGGATGTGCTACCACCGGCGTCGTTGCCG
TCGCCAACACCGTCCTCAACCTCACCCCAAGCATCGCCCATGACCGCACC
ACCGGCACCGTCTGCGCTCCGATCCCAAGCATCGCCCACGATGTCAACAC
CAGCACCGCCCGGCACGTCTCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1757:5638..7460-

>mRNA_L-elsbetiae_contig1757.4951.1 ID=mRNA_L-elsbetiae_contig1757.4951.1|Name=mRNA_L-elsbetiae_contig1757.4951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig1757:5638..7460- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTTTGGCAAGAACACTGTGCATGCATCGGCAGAAGAGAACTTGCGG
GCCCACGAAGGCAGCAAACAACACCTACGATGTGTTTGGCAAGAACACTG
TGCATGCATCGGCAGAAGAGAACTTGCGGGCCCACGAAGGCAGCAAACAA
CACCTACGCGGCGTGGAAAGGAAAAAGAAGAAAAAAGCCGAGGCGCCCCC
CACACTTCGGAAACTGCCAGTGGAAGAATACGCCAAGAAGAACGCTAAAG
GGGAATGGGTGTGCACGTGCGGCAAGATATTTGCCAAGGGTGAAACGCTG
GCGCGGGGGAACATCGAGCAGCACACAAAATCCGACGAACACAACGGCGT
GGAAAGGAAAAAGAAGAAAAAAGCCGAGGCGCCCCCCACACTTCGGAAAC
TGCCAGTGGAAGAATACGCCAAGAAGAACGCTAAAGGGGAATGGGTGTGC
ACGTGCGGCAAGATATTTGCCAAGGGTGAAACGCTGGCGCGGGGGAACAT
CGAGCAGCACACAAAATCCGACGAACACAAGAAACGGTTACGGAGGGACG
GAGGCACGAGTATGCAGAAGTCGATGTTGTCCTTTTACACAAGAGCACCC
AAGCCCCAGAAGGAAGCGGACGGAGATCCTGCGGCCACGTCGGAGACGCC
GCGGGCGGGGTCATCCCTGCTCGCCACCGAGGGAGAAGGCCCCCCTCGAG
CGGGTGGAACGGCGTCGAGCGGGGGTGCGGGAGACGACGATGGATGCGAG
GTAGGAAACGGTTACGGAGGGACGGAGGCACGAGTATGCAGAAGTCGATG
TTGTCCTTTTACACAAGAGCACCCAAGCCCCAGAAGGAAGCGGACGGAGA
TCCTGCGGCCACGTCGGAGACGCCGCGGGCGGGGTCATCCCTGCTCGCCA
CCGAGGGAGAAGGCCCCCCTCGAGCGGGTGGAACGGCGTCGAGCGGGGGT
GCGGGAGACGACGATGGATGCGAGGTAG
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