mRNA_L-elsbetiae_contig1757.4949.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1757.4949.1
Unique NamemRNA_L-elsbetiae_contig1757.4949.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1757.4949.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 6.640e-39
Identity = 73/102 (71.57%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 ISQLLRGLARVSFLLLFLYRAMRTSLMPGQLFHDMQATIRAEFHLVSEAKRHCPNEKLYLWMAGTDGLENLFAVVRCVTHARNVDAKELIERFGSAIGVEQV 306
            IS+LLRGLARV+FLLLF+YR  +T   PGQL HD+QATIR  F++V EA+  CP E+LYLWM GTDGLENLFA+VR +THA NVDAKE IERFG+ IGVEQV
Sbjct:   53 ISELLRGLARVAFLLLFVYRMKKTRFKPGQLDHDLQATIRLLFYVVLEAQVRCPRERLYLWMIGTDGLENLFAIVRTLTHASNVDAKEAIERFGAVIGVEQV 154          
BLAST of mRNA_L-elsbetiae_contig1757.4949.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.170e-15
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1
Query:  142 EAKRHCPNEKLYLWMAGTDGLENLFAVVRCVTHARNVDAKELIERFGSAIGVEQV 306
            EAK  CP E+LYLW+ GTD LENLFA+V  +THA NVDAKE IERF +AI VE+V
Sbjct:  863 EAKVRCPRERLYLWVIGTDELENLFAIVHTLTHASNVDAKEAIERFRAAIEVEKV 917          
BLAST of mRNA_L-elsbetiae_contig1757.4949.1 vs. uniprot
Match: A0A813ZQY9_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813ZQY9_9BILA)

HSP 1 Score: 76.6 bits (187), Expect = 1.530e-14
Identity = 38/103 (36.89%), Postives = 67/103 (65.05%), Query Frame = 1
Query:   13 LRGLARVSFLLLFLYRAMRTSLMPGQLFHDMQATIRAEFHLVSEAKRHCPNEKLYLWMAGTDGLENLFAVVRCVTHARNVDAKELIERFGSAIGVEQVFERHP 321
            L  LA +S LLL+++R  +T  +   L+HD+Q+T++  F   +  ++    + LYL+  GTD LE+LF+ VR +TH+RN D  EL++R   ++ +E+V+ ++P
Sbjct:   48 LSNLACLSHLLLYVFRKHKTKYITNDLYHDLQSTVQDAFISTAIYQKKFSQKPLYLYQLGTDQLESLFSSVRTLTHSRNCDILELLDRLKISLQIEKVYSQNP 150          
BLAST of mRNA_L-elsbetiae_contig1757.4949.1 vs. uniprot
Match: A0A067MDA1_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MDA1_9AGAM)

HSP 1 Score: 73.9 bits (180), Expect = 6.240e-14
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 ISQLLRGLARVSFLLLFLYRAMRTSLMPGQLFHDMQATIRAEFHLVSEAKRHCPNEKLYLWMAGTDGLENLFAVVRCVTHARNVDAKELIERFGSAIGVEQVFERHP 321
            +S+ L  L+  + L   LY    ++ MP QL+HD+ ATI+  F  V++ K   P+   YL + GTD LE LF+ VR +TH RN D  +LIER  +A  +  +  +HP
Sbjct:   63 LSEQLESLSCRAHLTFALYSINGSAFMPPQLYHDIMATIKNIFFCVAKQKILDPDAPFYLCLVGTDRLEILFSTVRTMTHDRNADFLQLIERIAAAFDITIILCKHP 169          
BLAST of mRNA_L-elsbetiae_contig1757.4949.1 vs. uniprot
Match: A0A074RND4_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Rhizoctonia solani 123E TaxID=1423351 RepID=A0A074RND4_9AGAM)

HSP 1 Score: 72.4 bits (176), Expect = 1.370e-12
Identity = 38/107 (35.51%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 ISQLLRGLARVSFLLLFLYRAMRTSLMPGQLFHDMQATIRAEFHLVSEAKRHCPNEKLYLWMAGTDGLENLFAVVRCVTHARNVDAKELIERFGSAIGVEQVFERHP 321
            +SQ L  L+  + LL  LYR    S + GQL++D+Q TI+  +  V+++++  P+  +YL   GTD LE  F+ +R +TH RN+D  +L +R  +A  +++++ R+P
Sbjct:  419 LSQQLTHLSTCAHLLFALYRLNGGSFISGQLYYDVQTTIKTAYFTVAKSQQIDPDGPVYLLQTGTDRLEQRFSTMRTMTHDRNMDIVQLADRAEAAQYIDEIYARNP 525          
BLAST of mRNA_L-elsbetiae_contig1757.4949.1 vs. uniprot
Match: A0A066V8D5_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066V8D5_9AGAM)

HSP 1 Score: 72.0 bits (175), Expect = 1.810e-12
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 1
Query:    1 ISQLLRGLARVSFLLLFLYRAMRTSLMPGQLFHDMQATIRAEFHLVSEAKRHCPNEKLYLWMAGTDGLENLFAVVRCVTHARNVDAKELIERFGSAIGVEQVFERHP 321
            +S+ +  L++   LL  LYR   T  +PGQLF+D+QA+I+     V++ +   PN   YL   GTD LEN F   R  T  RN D  ++ ER      ++Q+F  HP
Sbjct:  414 LSEQITSLSKCGHLLYSLYRINGTKFLPGQLFYDIQASIKNAVFCVAKTQLISPNLPFYLLQTGTDRLENRFGTYRTTTSDRNGDLLQMSERAAGVQLIDQIFADHP 520          
BLAST of mRNA_L-elsbetiae_contig1757.4949.1 vs. uniprot
Match: A0A0K6GBF2_9AGAM (Uncharacterized protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6GBF2_9AGAM)

HSP 1 Score: 72.0 bits (175), Expect = 1.910e-12
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   22 LARVSFLLLFLYRAMRTSLMPGQLFHDMQATIRAEFHLVSEAKRHCPNEKLYLWMAGTDGLENLFAVVRCVTHARNVDAKELIERFGSAIGVEQVFERHP 321
            LA+ +F+L  L+R   T  + GQL++D+Q TI+     +++ +   P E  YL   GTD LENLF + R  +H RN+D  +L ER  +A  V+ +   +P
Sbjct:  445 LAKCAFILFALFRLDGTRFITGQLYYDIQTTIKTAMFSIAKMQVLAPREPFYLIQLGTDRLENLFGIYRTASHDRNLDILQLAERSSAAQEVDNILAEYP 544          
BLAST of mRNA_L-elsbetiae_contig1757.4949.1 vs. uniprot
Match: A0A066VD41_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066VD41_9AGAM)

HSP 1 Score: 68.9 bits (167), Expect = 2.270e-11
Identity = 38/107 (35.51%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    1 ISQLLRGLARVSFLLLFLYRAMRTSLMPGQLFHDMQATIRAEFHLVSEAKRHCPNEKLYLWMAGTDGLENLFAVVRCVTHARNVDAKELIERFGSAIGVEQVFERHP 321
            +SQ L  L+  + LL  LYR    + + GQL++D+Q TI+  +  V++++   P   +YL   GTD LE  FA +  +TH RN+D  +L +R  +A  V++++ R+P
Sbjct:  462 LSQQLTHLSTCAHLLFALYRLNGGAFISGQLYYDVQTTIKTAYFTVAKSQEIDPEGPVYLLQTGTDRLEQRFATMWTMTHDRNMDIVQLADRAEAAQYVDEIYARNP 568          
BLAST of mRNA_L-elsbetiae_contig1757.4949.1 vs. uniprot
Match: A0A0C9VLG1_SPHS4 (Uncharacterized protein (Fragment) n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VLG1_SPHS4)

HSP 1 Score: 64.3 bits (155), Expect = 6.410e-11
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   70 TSLMPGQLFHDMQATIRAEFHLVSEAKRHCPNEKLYLWMAGTDGLENLFAVVRCVTHARNVDAKELIERFGSAIGVEQVFERHP 321
            TS + GQL+H++Q+ I+  +  V++ +   P    YL     D LENLF  VR +TH RNVD  +L++R  SA  +  +   HP
Sbjct:    6 TSFISGQLYHNLQSMIKNVYFCVTKQRLLDPTCGFYLCQVDDDRLENLFGTVRTLTHDRNVDTLQLVDRLTSAGDINTILTEHP 89          
BLAST of mRNA_L-elsbetiae_contig1757.4949.1 vs. uniprot
Match: A0A066W3Y0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066W3Y0_9AGAM)

HSP 1 Score: 67.4 bits (163), Expect = 7.960e-11
Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 ISQLLRGLARVSFLLLFLYRAMRTSLMPGQLFHDMQATIRAEFHLVSEAKRHCPNEKLYLWMAGTDGLENLFAVVRCVTHARNVDAKELIERFGSA--IGVEQVFERHP 321
            +S+ L  L++   LL  LYR  R+  M GQL++D+Q++I++    V++ K   P+   YL   G D LEN FA  R ++H RN+D  +L +   SA  I  + V+ R+P
Sbjct:  515 LSEQLVLLSKCGHLLFVLYRLNRSQFMSGQLYYDIQSSIKSAHFCVAKTKILDPHAPFYLLQCGDDRLENRFATFRTMSHDRNMDLLQLADHSASAQHISADPVYVRNP 623          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1757.4949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L2E6_9PHAE6.640e-3971.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6M3_9PHAE5.170e-1569.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A813ZQY9_9BILA1.530e-1436.89Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A067MDA1_9AGAM6.240e-1439.25Uncharacterized protein (Fragment) n=1 Tax=Botryob... [more]
A0A074RND4_9AGAM1.370e-1235.51Uncharacterized protein (Fragment) n=1 Tax=Rhizoct... [more]
A0A066V8D5_9AGAM1.810e-1237.38Uncharacterized protein (Fragment) n=1 Tax=Rhizoct... [more]
A0A0K6GBF2_9AGAM1.910e-1237.00Uncharacterized protein n=1 Tax=Rhizoctonia solani... [more]
A0A066VD41_9AGAM2.270e-1135.51Uncharacterized protein (Fragment) n=1 Tax=Rhizoct... [more]
A0A0C9VLG1_SPHS46.410e-1138.10Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
A0A066W3Y0_9AGAM7.960e-1136.70Uncharacterized protein (Fragment) n=1 Tax=Rhizoct... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1757contigL-elsbetiae_contig1757:2322..2642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue2.5e-18
Seed eggNOG ortholog2880.D7G3X4
Hectar predicted targeting categorysignal peptide
EggNOG OGs2DMFT@1,2S64X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.6070065-CDS-L-elsbetiae_contig1757:2321..26421622815731.6070065-CDS-L-elsbetiae_contig1757:2321..2642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 2322..2642 -
1691683066.2839963-CDS-L-elsbetiae_contig1757:2321..26421691683066.2839963-CDS-L-elsbetiae_contig1757:2321..2642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1757 2322..2642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1757.4949.1prot_L-elsbetiae_contig1757.4949.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1757 2322..2642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1757.4949.1

>prot_L-elsbetiae_contig1757.4949.1 ID=prot_L-elsbetiae_contig1757.4949.1|Name=mRNA_L-elsbetiae_contig1757.4949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
ISQLLRGLARVSFLLLFLYRAMRTSLMPGQLFHDMQATIRAEFHLVSEAK
RHCPNEKLYLWMAGTDGLENLFAVVRCVTHARNVDAKELIERFGSAIGVE
QVFERHP
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mRNA from alignment at L-elsbetiae_contig1757:2322..2642-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1757.4949.1 ID=mRNA_L-elsbetiae_contig1757.4949.1|Name=mRNA_L-elsbetiae_contig1757.4949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=321bp|location=Sequence derived from alignment at L-elsbetiae_contig1757:2322..2642- (Laminarionema elsbetiae ELsaHSoW15)
ATCTCCCAGCTTCTACGAGGGCTGGCCCGCGTCTCGTTTTTGCTCCTGTT CCTGTACCGGGCGATGAGGACGAGCTTGATGCCGGGGCAGCTCTTTCACG ACATGCAGGCGACTATCAGGGCTGAGTTCCACCTTGTGAGCGAAGCTAAG CGCCACTGTCCGAACGAGAAGCTGTATCTCTGGATGGCTGGGACGGATGG TCTAGAGAACCTGTTTGCGGTTGTACGCTGCGTGACGCACGCTCGGAACG TGGACGCGAAAGAGCTGATAGAGCGGTTTGGTAGTGCGATCGGGGTCGAG CAGGTGTTCGAGAGGCATCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1757:2322..2642-

>mRNA_L-elsbetiae_contig1757.4949.1 ID=mRNA_L-elsbetiae_contig1757.4949.1|Name=mRNA_L-elsbetiae_contig1757.4949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig1757:2322..2642- (Laminarionema elsbetiae ELsaHSoW15)
ATCTCCCAGCTTCTACGAGGGCTGGCCCGCGTCTCGTTTTTGCTCCTGTT
CCTGTACCGGGCGATGAGGACGAGCTTGATGCCGGGGCAGCTCTTTCACG
ACATGCAGGCGACTATCAGGGCTGAGTTCCACCTTGTGAGCGAAGCTAAG
CGCCACTGTCCGAACGAGAAGCTGTATCTCTGGATGGCTGGGACGGATGG
TCTAGAGAACCTGTTTGCGGTTGTACGCTGCGTGACGCACGCTCGGAACG
TGGACGCGAAAGAGCTGATAGAGCGGTTTGGTAGTGCGATCGGGGTCGAG
CAGGTGTTCGAGAGGCATCCGATCTCCCAGCTTCTACGAGGGCTGGCCCG
CGTCTCGTTTTTGCTCCTGTTCCTGTACCGGGCGATGAGGACGAGCTTGA
TGCCGGGGCAGCTCTTTCACGACATGCAGGCGACTATCAGGGCTGAGTTC
CACCTTGTGAGCGAAGCTAAGCGCCACTGTCCGAACGAGAAGCTGTATCT
CTGGATGGCTGGGACGGATGGTCTAGAGAACCTGTTTGCGGTTGTACGCT
GCGTGACGCACGCTCGGAACGTGGACGCGAAAGAGCTGATAGAGCGGTTT
GGTAGTGCGATCGGGGTCGAGCAGGTGTTCGAGAGGCATCCG
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