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Homology
BLAST of mRNA_L-elsbetiae_contig17566.4947.1 vs. uniprot
Match: D8LNZ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ7_ECTSI) HSP 1 Score: 317 bits (811), Expect = 1.940e-98 Identity = 239/464 (51.51%), Postives = 275/464 (59.27%), Query Frame = 3
Query: 9 MPGSRDAVDARGLSSPGVLRELDKENVVN----------KLRSAA-GSS---------------GTAKTKQETTA--ASQLASELSRAESEATRL--------------------------------------------------------------------RATVENLEEGNQLLREERGSLQSRLAKRDAAVSAMKDDLAAAARRDSSRCKELDRLQEELDMASREADALGAGGNGAQAQWTLEKEALEGRIADLETQAASSGRRCAALAAERDLLAEGSARREKEHSSAVDALQEDIQALHRRTTADLGDWRQRHRQEVCAKKALQGQLGRLVAASELVTRVAEKQAAMEASLQEIFGLLSQEVLAEQGGEGGS---AARVAEGVLEHILGRVFQTTAXXXXXXXXXXXXXXXXXXXXXKEREAERELNEEASASLGEELEKLTADM--VRLSHVDTTHT 1097
MPG+RDA GL SPGVL++LDKENVVN KL SA G+S G A T+ ASQLA++LSRAESE RL RATVENLE N+LLREERGSLQ+RLAKRDAAVSAMK DLAAA +RD + ++ DRL+EELD A+ + A GAQAQW L+KEALE RI +LETQAASSGRRC L AERDLLAE SARREKEH+S V +L+ ++Q LHRRTTADLGDWRQR+RQEV AK+AL+GQL RLVAASE VTRV EK A +EASLQE +GLLSQ VLAE+ G AARV EGVLEH+LGRVFQ TA KEREA+R L++EAS +LGEELEKLTADM +R +D HT
Sbjct: 1 MPGARDAGSGGGLFSPGVLQQLDKENVVNTPARTPDRRRKLGSAIRGTSSAAAAGVGFKVFQQQGEASTRTSVAGQEASQLATDLSRAESELARLKEEARQARRALDERNEMVEQLKASKANTKQRYTALLQSHEEANKELELLRTQKLDSSGDSGSGIVEQLRATVENLETNNELLREERGSLQTRLAKRDAAVSAMKADLAAATQRDDALRQKADRLREELDAAAAASKA------GAQAQWDLDKEALEARIGELETQAASSGRRCVELVAERDLLAEESARREKEHASTVASLRSEMQGLHRRTTADLGDWRQRYRQEVGAKRALEGQLERLVAASESVTRVIEKHAVLEASLQEAYGLLSQAVLAEERGXXXXXXXAARVVEGVLEHLLGRVFQATATSGDEEEEGEDEEGR------KEREADRRLSKEASDNLGEELEKLTADMEALRSFGLDEAHT 452
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_000560.1 |
| Exons | 1 |
| Model size | 1097 |
| Cds size | 1089 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815731.4302742-UTR-L-elsbetiae_contig17566:2114..2122 | 1622815731.4302742-UTR-L-elsbetiae_contig17566:2114..2122 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig17566 2115..2122 + |
| 1691683066.1803696-UTR-L-elsbetiae_contig17566:2114..2122 | 1691683066.1803696-UTR-L-elsbetiae_contig17566:2114..2122 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig17566 2115..2122 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815731.4408119-CDS-L-elsbetiae_contig17566:2122..3211 | 1622815731.4408119-CDS-L-elsbetiae_contig17566:2122..3211 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig17566 2123..3211 + |
| 1691683066.1888816-CDS-L-elsbetiae_contig17566:2122..3211 | 1691683066.1888816-CDS-L-elsbetiae_contig17566:2122..3211 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig17566 2123..3211 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17566.4947.1 >prot_L-elsbetiae_contig17566.4947.1 ID=prot_L-elsbetiae_contig17566.4947.1|Name=mRNA_L-elsbetiae_contig17566.4947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=363bp
MPGSRDAVDARGLSSPGVLRELDKENVVNKLRSAAGSSGTAKTKQETTAA
SQLASELSRAESEATRLRATVENLEEGNQLLREERGSLQSRLAKRDAAVS
AMKDDLAAAARRDSSRCKELDRLQEELDMASREADALGAGGNGAQAQWTL
EKEALEGRIADLETQAASSGRRCAALAAERDLLAEGSARREKEHSSAVDA
LQEDIQALHRRTTADLGDWRQRHRQEVCAKKALQGQLGRLVAASELVTRV
AEKQAAMEASLQEIFGLLSQEVLAEQGGEGGSAARVAEGVLEHILGRVFQ
TTAAAATPSGGGGEEEGGEDEERRKEREAERELNEEASASLGEELEKLTA
DMVRLSHVDTTHT back to topmRNA from alignment at L-elsbetiae_contig17566:2115..3211+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig17566.4947.1 ID=mRNA_L-elsbetiae_contig17566.4947.1|Name=mRNA_L-elsbetiae_contig17566.4947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1097bp|location=Sequence derived from alignment at L-elsbetiae_contig17566:2115..3211+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTAACCATGCCGGGTTCACGAGATGCAGTCGATGCGCGAGGCTTGTCG
TCGCCAGGAGTTCTCCGGGAGTTGGACAAGGAAAATGTCGTCAACAAGCT
CCGCTCGGCAGCAGGCAGCAGCGGCACGGCGAAGACCAAGCAAGAAACGA
CAGCGGCTTCACAGCTCGCCTCCGAGCTATCTCGCGCGGAGTCAGAGGCG
ACCAGGCTCCGAGCCACGGTGGAGAACCTCGAGGAGGGCAACCAGCTGCT
GCGGGAGGAGCGAGGCTCGCTGCAATCCCGGCTGGCCAAGCGAGACGCGG
CCGTTTCGGCCATGAAGGACGACCTCGCCGCCGCCGCACGGCGAGACAGC
AGCCGCTGCAAGGAGCTCGACCGCCTCCAGGAGGAGCTCGACATGGCCTC
CAGAGAGGCAGACGCACTGGGTGCCGGCGGCAACGGAGCGCAGGCGCAGT
GGACACTCGAGAAGGAAGCCCTCGAGGGTCGGATCGCCGACCTCGAGACA
CAGGCGGCGTCCTCCGGGCGCAGGTGCGCGGCGCTGGCGGCGGAGCGCGA
CCTCCTTGCGGAGGGATCCGCGAGGCGGGAGAAGGAGCACAGCTCCGCGG
TGGACGCTCTCCAAGAGGACATCCAGGCGCTGCACCGGAGAACAACGGCA
GATCTGGGAGACTGGAGGCAGCGGCACCGGCAGGAGGTGTGCGCCAAGAA
GGCCCTGCAGGGGCAGCTGGGCCGGCTGGTCGCCGCCAGCGAGCTCGTGA
CCCGCGTCGCGGAGAAGCAGGCCGCTATGGAAGCTTCCCTGCAGGAGATT
TTCGGCCTGCTGTCTCAGGAAGTGCTCGCAGAGCAAGGTGGAGAGGGTGG
CTCAGCGGCAAGGGTGGCGGAGGGAGTTCTGGAGCACATTCTCGGACGGG
TGTTTCAGACCACCGCCGCCGCCGCCACTCCGAGCGGGGGGGGCGGGGAG
GAGGAGGGGGGAGAGGACGAAGAAAGAAGGAAGGAGCGGGAAGCTGAGCG
GGAACTGAACGAGGAGGCCTCGGCTAGCCTCGGCGAAGAGCTCGAGAAGC
TTACTGCCGATATGGTGCGTCTCTCTCATGTAGATACAACACACACC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig17566:2115..3211+ >mRNA_L-elsbetiae_contig17566.4947.1 ID=mRNA_L-elsbetiae_contig17566.4947.1|Name=mRNA_L-elsbetiae_contig17566.4947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2178bp|location=Sequence derived from alignment at L-elsbetiae_contig17566:2115..3211+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGGTTCACGAGATGCAGTCGATGCGCGAGGCTTGTCGTCGCCAGG
AGTTCTCCGGGAGTTGGACAAGGAAAATGTCGTCAACAAGCTCCGCTCGG
CAGCAGGCAGCAGCGGCACGGCGAAGACCAAGCAAGAAACGACAGCGGCT
TCACAGCTCGCCTCCGAGCTATCTCGCGCGGAGTCAGAGGCGACCAGGCT
CCGAGCCACGGTGGAGAACCTCGAGGAGGGCAACCAGCTGCTGCGGGAGG
AGCGAGGCTCGCTGCAATCCCGGCTGGCCAAGCGAGACGCGGCCGTTTCG
GCCATGAAGGACGACCTCGCCGCCGCCGCACGGCGAGACAGCAGCCGCTG
CAAGGAGCTCGACCGCCTCCAGGAGGAGCTCGACATGGCCTCCAGAGAGG
CAGACGCACTGGGTGCCGGCGGCAACGGAGCGCAGGCGCAGTGGACACTC
GAGAAGGAAGCCCTCGAGGGTCGGATCGCCGACCTCGAGACACAGGCGGC
GTCCTCCGGGCGCAGGTGCGCGGCGCTGGCGGCGGAGCGCGACCTCCTTG
CGGAGGGATCCGCGAGGCGGGAGAAGGAGCACAGCTCCGCGGTGGACGCT
CTCCAAGAGGACATCCAGGCGCTGCACCGGAGAACAACGGCAGATCTGGG
AGACTGGAGGCAGCGGCACCGGCAGGAGGTGTGCGCCAAGAAGGCCCTGC
AGGGGCAGCTGGGCCGGCTGGTCGCCGCCAGCGAGCTCGTGACCCGCGTC
GCGGAGAAGCAGGCCGCTATGGAAGCTTCCCTGCAGGAGATTTTCGGCCT
GCTGTCTCAGGAAGTGCTCGCAGAGCAAGGTGGAGAGGGTGGCTCAGCGG
CAAGGGTGGCGGAGGGAGTTCTGGAGCACATTCTCGGACGGGTGTTTCAG
ACCACCGCCGCCGCCGCCACTCCGAGCGGGGGGGGCGGGGAGGAGGAGGG
GGGAGAGGACGAAGAAAGAAGGAAGGAGCGGGAAGCTGAGCGGGAACTGA
ACGAGGAGGCCTCGGCTAGCCTCGGCGAAGAGCTCGAGAAGCTTACTGCC
GATATGGTGCGTCTCTCTCATGTAGATACAACACACACCATGCCGGGTTC
ACGAGATGCAGTCGATGCGCGAGGCTTGTCGTCGCCAGGAGTTCTCCGGG
AGTTGGACAAGGAAAATGTCGTCAACAAGCTCCGCTCGGCAGCAGGCAGC
AGCGGCACGGCGAAGACCAAGCAAGAAACGACAGCGGCTTCACAGCTCGC
CTCCGAGCTATCTCGCGCGGAGTCAGAGGCGACCAGGCTCCGAGCCACGG
TGGAGAACCTCGAGGAGGGCAACCAGCTGCTGCGGGAGGAGCGAGGCTCG
CTGCAATCCCGGCTGGCCAAGCGAGACGCGGCCGTTTCGGCCATGAAGGA
CGACCTCGCCGCCGCCGCACGGCGAGACAGCAGCCGCTGCAAGGAGCTCG
ACCGCCTCCAGGAGGAGCTCGACATGGCCTCCAGAGAGGCAGACGCACTG
GGTGCCGGCGGCAACGGAGCGCAGGCGCAGTGGACACTCGAGAAGGAAGC
CCTCGAGGGTCGGATCGCCGACCTCGAGACACAGGCGGCGTCCTCCGGGC
GCAGGTGCGCGGCGCTGGCGGCGGAGCGCGACCTCCTTGCGGAGGGATCC
GCGAGGCGGGAGAAGGAGCACAGCTCCGCGGTGGACGCTCTCCAAGAGGA
CATCCAGGCGCTGCACCGGAGAACAACGGCAGATCTGGGAGACTGGAGGC
AGCGGCACCGGCAGGAGGTGTGCGCCAAGAAGGCCCTGCAGGGGCAGCTG
GGCCGGCTGGTCGCCGCCAGCGAGCTCGTGACCCGCGTCGCGGAGAAGCA
GGCCGCTATGGAAGCTTCCCTGCAGGAGATTTTCGGCCTGCTGTCTCAGG
AAGTGCTCGCAGAGCAAGGTGGAGAGGGTGGCTCAGCGGCAAGGGTGGCG
GAGGGAGTTCTGGAGCACATTCTCGGACGGGTGTTTCAGACCACCGCCGC
CGCCGCCACTCCGAGCGGGGGGGGCGGGGAGGAGGAGGGGGGAGAGGACG
AAGAAAGAAGGAAGGAGCGGGAAGCTGAGCGGGAACTGAACGAGGAGGCC
TCGGCTAGCCTCGGCGAAGAGCTCGAGAAGCTTACTGCCGATATGGTGCG
TCTCTCTCATGTAGATACAACACACACC back to top
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