mRNA_L-elsbetiae_contig17562.4946.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17562.4946.1
Unique NamemRNA_L-elsbetiae_contig17562.4946.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17562.4946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17562contigL-elsbetiae_contig17562:2845..3195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.3921905-CDS-L-elsbetiae_contig17562:2844..31951622815731.3921905-CDS-L-elsbetiae_contig17562:2844..3195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17562 2845..3195 +
1691683066.1718385-CDS-L-elsbetiae_contig17562:2844..31951691683066.1718385-CDS-L-elsbetiae_contig17562:2844..3195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17562 2845..3195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17562.4946.1prot_L-elsbetiae_contig17562.4946.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17562 2845..3195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17562.4946.1

>prot_L-elsbetiae_contig17562.4946.1 ID=prot_L-elsbetiae_contig17562.4946.1|Name=mRNA_L-elsbetiae_contig17562.4946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
ILWSLKLNHEHMPNTLKLTVLRRSSLKLWRSHRTQQLAAAAAAGGSVCDG
WITGQHAGLEQEDRPGVRAKDARDDGQAAVASAGQARRATPGEWGIGARV
DARCGEIGAFSPSSHL*
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mRNA from alignment at L-elsbetiae_contig17562:2845..3195+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17562.4946.1 ID=mRNA_L-elsbetiae_contig17562.4946.1|Name=mRNA_L-elsbetiae_contig17562.4946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=351bp|location=Sequence derived from alignment at L-elsbetiae_contig17562:2845..3195+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCTCTGGTCTCTGAAGCTCAACCACGAACATATGCCGAACACTTTAAA
GTTGACTGTCCTCCGGAGGAGTTCCCTGAAGCTTTGGAGGTCACACCGCA
CGCAGCAGCTAGCAGCAGCAGCAGCAGCGGGAGGATCTGTGTGTGACGGC
TGGATTACAGGCCAACACGCAGGTTTAGAGCAGGAGGATCGACCAGGGGT
GAGAGCTAAGGATGCAAGAGATGATGGGCAAGCTGCCGTTGCTTCTGCAG
GCCAAGCCAGACGGGCGACGCCGGGGGAGTGGGGCATCGGTGCAAGAGTC
GATGCAAGGTGCGGCGAGATTGGAGCGTTCTCGCCGAGCAGCCACCTATA
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17562:2845..3195+

>mRNA_L-elsbetiae_contig17562.4946.1 ID=mRNA_L-elsbetiae_contig17562.4946.1|Name=mRNA_L-elsbetiae_contig17562.4946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig17562:2845..3195+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCTCTGGTCTCTGAAGCTCAACCACGAACATATGCCGAACACTTTAAA
GTTGACTGTCCTCCGGAGGAGTTCCCTGAAGCTTTGGAGGTCACACCGCA
CGCAGCAGCTAGCAGCAGCAGCAGCAGCGGGAGGATCTGTGTGTGACGGC
TGGATTACAGGCCAACACGCAGGTTTAGAGCAGGAGGATCGACCAGGGGT
GAGAGCTAAGGATGCAAGAGATGATGGGCAAGCTGCCGTTGCTTCTGCAG
GCCAAGCCAGACGGGCGACGCCGGGGGAGTGGGGCATCGGTGCAAGAGTC
GATGCAAGGTGCGGCGAGATTGGAGCGTTCTCGCCGAGCAGCCACCTATA
GATCCTCTGGTCTCTGAAGCTCAACCACGAACATATGCCGAACACTTTAA
AGTTGACTGTCCTCCGGAGGAGTTCCCTGAAGCTTTGGAGGTCACACCGC
ACGCAGCAGCTAGCAGCAGCAGCAGCAGCGGGAGGATCTGTGTGTGACGG
CTGGATTACAGGCCAACACGCAGGTTTAGAGCAGGAGGATCGACCAGGGG
TGAGAGCTAAGGATGCAAGAGATGATGGGCAAGCTGCCGTTGCTTCTGCA
GGCCAAGCCAGACGGGCGACGCCGGGGGAGTGGGGCATCGGTGCAAGAGT
CGATGCAAGGTGCGGCGAGATTGGAGCGTTCTCGCCGAGCAGCCACCTAT
AG
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