mRNA_L-elsbetiae_contig17551.4944.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17551.4944.1
Unique NamemRNA_L-elsbetiae_contig17551.4944.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17551.4944.1 vs. uniprot
Match: A0A6H5L721_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L721_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 3.100e-40
Identity = 70/88 (79.55%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 PPVHFLSTYNRNQMKDVFLGKGTWAVLCSGDGAAYDAVYKRFGTASKAMKGSTKFGVVDCSGSLPSGKSILQKFQLSVRHMYLKVLTG 264
            PP+HFLSTYNRNQMKDVFLGKG W VLCSG+GA YDAVYKRFGTASKAM GS KFGVVDC+GSLPSGKSILQKF LS     +  +TG
Sbjct:   45 PPIHFLSTYNRNQMKDVFLGKGMWVVLCSGEGAGYDAVYKRFGTASKAMTGSAKFGVVDCAGSLPSGKSILQKFDLSEEVKPVLFVTG 132
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BLAST of mRNA_L-elsbetiae_contig17551.4944.1 vs. uniprot
Match: A0A835ZG14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG14_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.120e-13
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:    4 PVHFLSTYNRNQMKDVFLGKGTWAVLCSGDGAAYDAVYKRFGTASKAMKGSTKFGVVDCSGSLPSGKSILQKFQLSV 234
            P+H+LS  N +QM+ VFLG  TW VLC    AA  A++    TA         FGV+DC G+LPSGK++L+KF + V
Sbjct:   34 PLHYLSARNVDQMRAVFLGNETWVVLCHAGAAAVPALFDA--TARAPPSPGVAFGVLDCGGTLPSGKTVLEKFGIDV 108
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BLAST of mRNA_L-elsbetiae_contig17551.4944.1 vs. uniprot
Match: D8LFH7_ECTSI (NIMA-like PK similar to Serine/threonine-protein kinase Nek1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH7_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 4.230e-12
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   70 WAVLCSGDGAAYDAVYKRFGTASKAMKGSTKFGVVDCSGSLPSGKSILQKFQLSVR 237
            W VLC   G  Y++ Y RF TAS+ +  S KFGVVDC GSLPSGKSI+QKF L+ R
Sbjct:  363 WVVLCKKKGPDYNSAYGRFETASRTLTESVKFGVVDCFGSLPSGKSIIQKFGLTNR 418
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17551.4944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L721_9PHAE3.100e-4079.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZG14_9STRA6.120e-1346.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LFH7_ECTSI4.230e-1260.71NIMA-like PK similar to Serine/threonine-protein k... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17551contigL-elsbetiae_contig17551:2910..3173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue3.4e-10
Seed eggNOG ortholog2880.D8LFH7
KEGG koko:K08857
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0589@1,KOG0589@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03036,ko03400
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002520.1
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.2528038-CDS-L-elsbetiae_contig17551:2909..31731622815731.2528038-CDS-L-elsbetiae_contig17551:2909..3173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17551 2910..3173 +
1691683066.0743191-CDS-L-elsbetiae_contig17551:2909..31731691683066.0743191-CDS-L-elsbetiae_contig17551:2909..3173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17551 2910..3173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17551.4944.1prot_L-elsbetiae_contig17551.4944.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17551 2910..3173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17551.4944.1

>prot_L-elsbetiae_contig17551.4944.1 ID=prot_L-elsbetiae_contig17551.4944.1|Name=mRNA_L-elsbetiae_contig17551.4944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
PPVHFLSTYNRNQMKDVFLGKGTWAVLCSGDGAAYDAVYKRFGTASKAMK
GSTKFGVVDCSGSLPSGKSILQKFQLSVRHMYLKVLTG
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mRNA from alignment at L-elsbetiae_contig17551:2910..3173+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17551.4944.1 ID=mRNA_L-elsbetiae_contig17551.4944.1|Name=mRNA_L-elsbetiae_contig17551.4944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig17551:2910..3173+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCGGTGCACTTCCTGTCGACCTACAACCGAAACCAGATGAAGGACGT
GTTCCTCGGGAAGGGGACGTGGGCGGTGCTCTGCAGCGGGGACGGGGCGG
CCTACGACGCCGTGTACAAGCGGTTCGGCACGGCCTCCAAGGCCATGAAG
GGCTCGACCAAGTTCGGAGTGGTCGACTGCAGCGGCTCGCTGCCTTCCGG
CAAGAGCATCCTCCAGAAGTTCCAGCTTTCGGTGAGACATATGTACTTAA
AAGTACTTACAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17551:2910..3173+

>mRNA_L-elsbetiae_contig17551.4944.1 ID=mRNA_L-elsbetiae_contig17551.4944.1|Name=mRNA_L-elsbetiae_contig17551.4944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig17551:2910..3173+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCGGTGCACTTCCTGTCGACCTACAACCGAAACCAGATGAAGGACGT
GTTCCTCGGGAAGGGGACGTGGGCGGTGCTCTGCAGCGGGGACGGGGCGG
CCTACGACGCCGTGTACAAGCGGTTCGGCACGGCCTCCAAGGCCATGAAG
GGCTCGACCAAGTTCGGAGTGGTCGACTGCAGCGGCTCGCTGCCTTCCGG
CAAGAGCATCCTCCAGAAGTTCCAGCTTTCGGTGAGACATATGTACTTAA
AAGTACTTACAGGGCCGCCGGTGCACTTCCTGTCGACCTACAACCGAAAC
CAGATGAAGGACGTGTTCCTCGGGAAGGGGACGTGGGCGGTGCTCTGCAG
CGGGGACGGGGCGGCCTACGACGCCGTGTACAAGCGGTTCGGCACGGCCT
CCAAGGCCATGAAGGGCTCGACCAAGTTCGGAGTGGTCGACTGCAGCGGC
TCGCTGCCTTCCGGCAAGAGCATCCTCCAGAAGTTCCAGCTTTCGGTGAG
ACATATGTACTTAAAAGTACTTACAGGG
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