mRNA_L-elsbetiae_contig17541.4941.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17541.4941.1
Unique NamemRNA_L-elsbetiae_contig17541.4941.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17541.4941.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 3.490e-69
Identity = 202/217 (93.09%), Postives = 210/217 (96.77%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASMIGSSRVVRDLLRQGASVSVADSDGYTALHHAVNHKHLAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRANADPMLSRYGSLPLGMAVYNGHLKVVRELVYWYGIDRCTSDGGALALATAASRKHVNIVTFLCDAGV 651
            MPSTLSKASGSADPTIATTDIDRRCG TNQTPLMVAS+IGSSRVVRDLLRQGASVSVADSDGYTALHHAV HKHLAVS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ANA+P+LS YGSLPLGMAVY+GHL+VVRELV+WYG DRCTSDGGALALATAASRKHV+IV FLC+AGV
Sbjct:  422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANANPLLSAYGSLPLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGV 638
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BLAST of mRNA_L-elsbetiae_contig17541.4941.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 8.150e-69
Identity = 180/217 (82.95%), Postives = 191/217 (88.02%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASMIGSSRVVRDLLRQGASVSVADSDGYTALHHAVNHKHLAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRANADPMLSRYGSLPLGMAVYNGHLKVVRELVYWYGIDRCTSDGGALALATAASRKHVNIVTFLCDAGV 651
            MPSTLSKASGS +  +ATTDIDRRCGDTN TPLMVAS+IGSSRVV+DLLRQGASVSVADSDGYTALHH+V H+HLAVS               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RANA+P+LS YGSLPLG AVYNGHLKVV ELV+WYG DRCT+DGG LALATAASRKHV+IVTFLCDAGV
Sbjct:    1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGV 217
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BLAST of mRNA_L-elsbetiae_contig17541.4941.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.460e-57
Identity = 191/218 (87.61%), Postives = 193/218 (88.53%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASMIGSSRVVRDLLRQGASVSVADSDGYTALHHAVNHKHLAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRANADPMLSRYGSLPLG-MAVYNGHLKVVRELVYWYGIDRCTSDGGALALATAASRKHVNIVTFLCDAGV 651
            MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVAS+IG SRVVRDLLRQGASVSVADSDGYTALHHAV HKHLAVS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       LS YGSLPL  M          RELVYWYGIDRCTSDGGALAL TAASRKHV+IVTFL DAGV
Sbjct:    7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYGSLPLYIMXXXXXXXXXXRELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGV 224
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BLAST of mRNA_L-elsbetiae_contig17541.4941.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 4.370e-42
Identity = 137/209 (65.55%), Postives = 143/209 (68.42%), Query Frame = 1 
Query:   25 SGSADPTIATTDIDRRCGDTNQTPLMVASMIGSSRVVRDLLRQGASVSVADSDGYTALHHAVNHKHLAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRANADPMLSRYGSLPLGMAVYNGHLKVVRELVYWYGIDRCTSDGGALALATAASRKHVNIVTFLCDAGV 651
            SGS +  IATTDIDRRCGDTNQTPLMVAS+IGSSRVVRDLLRQGASVS+ADSDGY ALHHAV HKHLAVS                                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +P+LS                    ELVYWYG D CTSDGGALALATAASR  V+IVTFLCDAGV
Sbjct:  399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 607
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BLAST of mRNA_L-elsbetiae_contig17541.4941.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.150e-35
Identity = 90/179 (50.28%), Postives = 94/179 (52.51%), Query Frame = 1 
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASMIGSSRVVRDLLRQGASVSVADSDGYTALHHAVNHKHLAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRANADPMLSRYGSLPLGMAVYNGHLKVVREL 537
            MPSTLSKASGS DPTIATT IDR CGDTNQTPLMVAS+IGSSRVVRDLLRQGASVSVADSDG TALHH+V H HLAVS                                                                      RANA+P+LS  GSLPL MAVYN  L   R L
Sbjct:    1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGMKLLMDSRLDDGATPLFLAASDGRLEAVRVLL------RANANPLLSACGSLPLYMAVYNRPLVRNRSL 173
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17541.4941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JL58_9PHAE3.490e-6993.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE8.150e-6982.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE1.460e-5787.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE4.370e-4265.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH66_ECTSI3.150e-3550.28EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17541contigL-elsbetiae_contig17541:1052..1702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue3.7e-29
Seed eggNOG ortholog2880.D8LH66
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size653
Cds size651
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.814918-CDS-L-elsbetiae_contig17541:1051..17021622815730.814918-CDS-L-elsbetiae_contig17541:1051..1702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17541 1052..1702 -
1691683065.750502-CDS-L-elsbetiae_contig17541:1051..17021691683065.750502-CDS-L-elsbetiae_contig17541:1051..1702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17541 1052..1702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17541.4941.1prot_L-elsbetiae_contig17541.4941.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17541 1052..1702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17541.4941.1

>prot_L-elsbetiae_contig17541.4941.1 ID=prot_L-elsbetiae_contig17541.4941.1|Name=mRNA_L-elsbetiae_contig17541.4941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=217bp
MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASMIGSSRVVRDLLR
QGASVSVADSDGYTALHHAVNHKHLAVSRDLIEAGADLEARHGGIDTPLH
VAATKGFCQGMVVLIDAGANVDSRLDDGATPLFEAAKDGRLEAVKILLRA
NADPMLSRYGSLPLGMAVYNGHLKVVRELVYWYGIDRCTSDGGALALATA
ASRKHVNIVTFLCDAGV
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mRNA from alignment at L-elsbetiae_contig17541:1052..1702-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17541.4941.1 ID=mRNA_L-elsbetiae_contig17541.4941.1|Name=mRNA_L-elsbetiae_contig17541.4941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=651bp|location=Sequence derived from alignment at L-elsbetiae_contig17541:1052..1702- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCATCAACTCTGAGCAAAGCCAGCGGTTCCGCCGATCCTACCATTGC
TACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTGA
TGGTGGCCTCCATGATCGGGTCCTCGCGCGTTGTGAGAGACCTTCTGCGG
CAGGGCGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCA
CCACGCGGTAAATCACAAACACCTGGCCGTGAGCAGAGACCTGATCGAGG
CGGGAGCGGACCTTGAAGCGAGGCATGGTGGCATAGATACACCACTCCAC
GTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTGCTGATCGACGC
AGGCGCGAACGTGGACAGCAGGCTCGACGACGGAGCAACACCGCTGTTCG
AAGCGGCAAAGGACGGGCGGCTCGAAGCGGTGAAAATTCTCCTTCGAGCG
AACGCTGATCCGATGCTGTCTCGGTACGGCAGTCTCCCGCTAGGAATGGC
GGTTTACAATGGACATCTGAAAGTGGTCCGCGAGCTCGTGTATTGGTACG
GAATCGATCGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGCC
GCTTCTCGCAAACACGTAAACATCGTCACCTTCCTGTGCGATGCCGGTGT
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17541:1052..1702-

>mRNA_L-elsbetiae_contig17541.4941.1 ID=mRNA_L-elsbetiae_contig17541.4941.1|Name=mRNA_L-elsbetiae_contig17541.4941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1302bp|location=Sequence derived from alignment at L-elsbetiae_contig17541:1052..1702- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCATCAACTCTGAGCAAAGCCAGCGGTTCCGCCGATCCTACCATTGC
TACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTGA
TGGTGGCCTCCATGATCGGGTCCTCGCGCGTTGTGAGAGACCTTCTGCGG
CAGGGCGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCA
CCACGCGGTAAATCACAAACACCTGGCCGTGAGCAGAGACCTGATCGAGG
CGGGAGCGGACCTTGAAGCGAGGCATGGTGGCATAGATACACCACTCCAC
GTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTGCTGATCGACGC
AGGCGCGAACGTGGACAGCAGGCTCGACGACGGAGCAACACCGCTGTTCG
AAGCGGCAAAGGACGGGCGGCTCGAAGCGGTGAAAATTCTCCTTCGAGCG
AACGCTGATCCGATGCTGTCTCGGTACGGCAGTCTCCCGCTAGGAATGGC
GGTTTACAATGGACATCTGAAAGTGGTCCGCGAGCTCGTGTATTGGTACG
GAATCGATCGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGCC
GCTTCTCGCAAACACGTAAACATCGTCACCTTCCTGTGCGATGCCGGTGT
GATGCCATCAACTCTGAGCAAAGCCAGCGGTTCCGCCGATCCTACCATTG
CTACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTG
ATGGTGGCCTCCATGATCGGGTCCTCGCGCGTTGTGAGAGACCTTCTGCG
GCAGGGCGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGC
ACCACGCGGTAAATCACAAACACCTGGCCGTGAGCAGAGACCTGATCGAG
GCGGGAGCGGACCTTGAAGCGAGGCATGGTGGCATAGATACACCACTCCA
CGTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTGCTGATCGACG
CAGGCGCGAACGTGGACAGCAGGCTCGACGACGGAGCAACACCGCTGTTC
GAAGCGGCAAAGGACGGGCGGCTCGAAGCGGTGAAAATTCTCCTTCGAGC
GAACGCTGATCCGATGCTGTCTCGGTACGGCAGTCTCCCGCTAGGAATGG
CGGTTTACAATGGACATCTGAAAGTGGTCCGCGAGCTCGTGTATTGGTAC
GGAATCGATCGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGC
CGCTTCTCGCAAACACGTAAACATCGTCACCTTCCTGTGCGATGCCGGTG
TG
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