mRNA_L-elsbetiae_contig1754.4938.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1754.4938.1
Unique NamemRNA_L-elsbetiae_contig1754.4938.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1754.4938.1 vs. uniprot
Match: D7FNG4_ECTSI (5-oxoprolinase (ATP-hydrolysing) 5-oxoprolinase (ATP-hydrolysing) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNG4_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 1.710e-43
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 3
Query:  105 RPFRFSIDRGGTFTDVYAEVPGSKGFRVLKLLSEDPHNYPDAPREGVRRILEEETGVPHPRDEPLNTSRIDYIRMGTTVA 344
            RPFRFSIDRGGTFTDVYAEVPG+KGFRVLKLLSEDP NYPDAPREGVRRILEEETGV HPRDEPL+TSRI+YIRMGTTVA
Sbjct:   17 RPFRFSIDRGGTFTDVYAEVPGAKGFRVLKLLSEDPQNYPDAPREGVRRILEEETGVAHPRDEPLDTSRIEYIRMGTTVA 96          
BLAST of mRNA_L-elsbetiae_contig1754.4938.1 vs. uniprot
Match: A0A7S3YE70_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE70_HETAK)

HSP 1 Score: 139 bits (349), Expect = 2.120e-39
Identity = 66/91 (72.53%), Postives = 79/91 (86.81%), Query Frame = 3
Query:   78 KVPASSEGERP--FRFSIDRGGTFTDVYAEVPGSKGFRVLKLLSEDPHNYPDAPREGVRRILEEETGVPHPRDEPLNTSRIDYIRMGTTVA 344
            K+   S+G++   F+FSIDRGGTFTD+YAE+PG KGFRV+KLLSEDP NYPDAPREG+RRILEEETGVPHPR  P++ +RI +IRMGTTVA
Sbjct:   49 KMAQKSDGDQSTGFKFSIDRGGTFTDIYAEIPG-KGFRVMKLLSEDPSNYPDAPREGIRRILEEETGVPHPRGLPIDPARIAHIRMGTTVA 138          
BLAST of mRNA_L-elsbetiae_contig1754.4938.1 vs. uniprot
Match: A0A059LPH0_9CHLO (Hydantoinase/oxoprolinase (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LPH0_9CHLO)

HSP 1 Score: 135 bits (339), Expect = 7.760e-38
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 3
Query:   96 EGERPFRFSIDRGGTFTDVYAE---VPGSKGFRVLKLLSEDPHNYPDAPREGVRRILEEETGVPHPRDEPLNTSRIDYIRMGTTVA 344
            EG R FRFSIDRGGTFTDVYAE     G+ G  V+KLLSEDP NYPDAPREG+RR+LE ETG+PHPRD PL+TSRI  IRMGTTVA
Sbjct:    2 EGPREFRFSIDRGGTFTDVYAEFFCADGTNGSHVMKLLSEDPGNYPDAPREGIRRVLEAETGIPHPRDTPLDTSRIHSIRMGTTVA 87          
BLAST of mRNA_L-elsbetiae_contig1754.4938.1 vs. uniprot
Match: A0A7S1T8F8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T8F8_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 7.040e-37
Identity = 65/85 (76.47%), Postives = 71/85 (83.53%), Query Frame = 3
Query:   99 GERPFRFSIDRGGTFTDVYAEVPGSKG---FRVLKLLSEDPHNYPDAPREGVRRILEEETGVPHPRDEPLNTSRIDYIRMGTTVA 344
            G R FRF+IDRGGTFTDV+AEVP S G    R LKLLSEDP NYPDAPREG+RRILE+ TG PHPRD+PL+TSRI  IRMGTTVA
Sbjct:    6 GGRVFRFAIDRGGTFTDVFAEVPKSDGGVEHRTLKLLSEDPDNYPDAPREGIRRILEQVTGEPHPRDKPLDTSRILSIRMGTTVA 90          
BLAST of mRNA_L-elsbetiae_contig1754.4938.1 vs. uniprot
Match: A0A7S0T482_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T482_9CHLO)

HSP 1 Score: 129 bits (323), Expect = 3.820e-35
Identity = 68/109 (62.39%), Postives = 77/109 (70.64%), Query Frame = 3
Query:   24 RLNSGTAEFER*--EANMEEKVPASSEGERPFRFSIDRGGTFTDVYAEVPGSKGFRVLKLLSEDPHNYPDAPREGVRRILEEETGVPHPRDEPLNTSRIDYIRMGTTVA 344
            R N+G A   R    A    +V  ++   R FRF IDRGGTFTDVYAEVPG  GFR LKLLSEDP NY  APREG+RRILEE TG   PRD P+ T+RI++IRMGTTVA
Sbjct:   62 RTNNGRASLARRVLHARRGIRVQCAASPPRDFRFCIDRGGTFTDVYAEVPGEIGFRTLKLLSEDPANYESAPREGIRRILEEATGQRIPRDAPVPTARIEWIRMGTTVA 170          
BLAST of mRNA_L-elsbetiae_contig1754.4938.1 vs. uniprot
Match: A0A836B857_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B857_9CHLO)

HSP 1 Score: 134 bits (336), Expect = 4.650e-34
Identity = 65/83 (78.31%), Postives = 70/83 (84.34%), Query Frame = 3
Query:  105 RPFRFSIDRGGTFTDVYAEVPGSKG---FRVLKLLSEDPHNYPDAPREGVRRILEEETGVPHPRDEPLNTSRIDYIRMGTTVA 344
            R F FSIDRGGTFTDV+AEVP  KG   F+VLKLLS DP NYPDAPREG+RR+LEE TGVPHPRD PL+TSRI  IRMGTTVA
Sbjct:    2 RDFHFSIDRGGTFTDVFAEVPDGKGGSKFKVLKLLSVDPANYPDAPREGIRRVLEEVTGVPHPRDRPLDTSRIASIRMGTTVA 84          
BLAST of mRNA_L-elsbetiae_contig1754.4938.1 vs. uniprot
Match: A0A836BUI7_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BUI7_9CHLO)

HSP 1 Score: 134 bits (336), Expect = 4.670e-34
Identity = 65/83 (78.31%), Postives = 70/83 (84.34%), Query Frame = 3
Query:  105 RPFRFSIDRGGTFTDVYAEVPGSKG---FRVLKLLSEDPHNYPDAPREGVRRILEEETGVPHPRDEPLNTSRIDYIRMGTTVA 344
            R F FSIDRGGTFTDV+AEVP  KG   FRVLKLLS DP NYPDAPREG+RR+LEE TGVPHPR +PL+TSRI  IRMGTTVA
Sbjct:    2 RDFHFSIDRGGTFTDVFAEVPDGKGGTKFRVLKLLSVDPSNYPDAPREGIRRVLEEVTGVPHPRSQPLDTSRIASIRMGTTVA 84          
BLAST of mRNA_L-elsbetiae_contig1754.4938.1 vs. uniprot
Match: W7TYX7_9STRA (5-oxoprolinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYX7_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.680e-34
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 3
Query:  111 FRFSIDRGGTFTDVYAEVPGSKGFRVLKLLSEDPHNYPDAPREGVRRILEEETGVPHPRDEPLNTSRIDYIRMGTTVA 344
            F F+IDRGGTFTDV+  +PG+ GFRVLKLLSEDP NYPDAPREG+RRILE+ETGVPHPRDEPL+TSRI  I+MGTTVA
Sbjct:    5 FSFAIDRGGTFTDVFCVLPGN-GFRVLKLLSEDPANYPDAPREGIRRILEQETGVPHPRDEPLDTSRIASIKMGTTVA 81          
BLAST of mRNA_L-elsbetiae_contig1754.4938.1 vs. uniprot
Match: A0A7S3DGS1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DGS1_9EUKA)

HSP 1 Score: 130 bits (327), Expect = 1.150e-33
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 3
Query:  105 RPFRFSIDRGGTFTDVYAEVPGSKGFRVLKLLSEDPHNYPDAPREGVRRILEEETGVPHPRDEPLNTSRIDYIRMGTTVA 344
            R FRF+IDRGGTFTDVYA+V G    RVLKLLS DPHNYPDAPREG+RRILE  TG+ HP+D+PL+TSR+  IRMGTTVA
Sbjct:   14 RAFRFAIDRGGTFTDVYADVEGETAPRVLKLLSVDPHNYPDAPREGIRRILEAVTGIAHPKDKPLDTSRLQSIRMGTTVA 93          
BLAST of mRNA_L-elsbetiae_contig1754.4938.1 vs. uniprot
Match: A0A348URQ0_9DELT (5-oxoprolinase (Fragment) n=1 Tax=Desulfobacter sp. TaxID=2294 RepID=A0A348URQ0_9DELT)

HSP 1 Score: 126 bits (317), Expect = 3.610e-33
Identity = 59/78 (75.64%), Postives = 67/78 (85.90%), Query Frame = 3
Query:  111 FRFSIDRGGTFTDVYAEVPGSKGFRVLKLLSEDPHNYPDAPREGVRRILEEETGVPHPRDEPLNTSRIDYIRMGTTVA 344
            FRFS+DRGGTFTD+YAEVPG  GFRV+KLLSEDP NYPDAPREG+RRILEE TG P P+ E   + RI++IRMGTTVA
Sbjct:    7 FRFSVDRGGTFTDIYAEVPGEPGFRVIKLLSEDPRNYPDAPREGIRRILEEVTGKPVPK-ELFESDRIEWIRMGTTVA 83          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1754.4938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNG4_ECTSI1.710e-4393.755-oxoprolinase (ATP-hydrolysing) 5-oxoprolinase (A... [more]
A0A7S3YE70_HETAK2.120e-3972.53Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A059LPH0_9CHLO7.760e-3875.58Hydantoinase/oxoprolinase (Fragment) n=1 Tax=Helic... [more]
A0A7S1T8F8_9CHLO7.040e-3776.47Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S0T482_9CHLO3.820e-3562.39Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A836B857_9CHLO4.650e-3478.31Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A836BUI7_9CHLO4.670e-3478.31Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
W7TYX7_9STRA4.680e-3480.775-oxoprolinase n=2 Tax=Monodopsidaceae TaxID=42507... [more]
A0A7S3DGS1_9EUKA1.150e-3375.00Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A348URQ0_9DELT3.610e-3375.645-oxoprolinase (Fragment) n=1 Tax=Desulfobacter sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1754contigL-elsbetiae_contig1754:13602..15051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue1.3e-36
Seed eggNOG ortholog2880.D7FNG4
KEGG rclassRC00553
KEGG koko:K01469
KEGG ReactionR00251
KEGG Pathwayko00480,map00480
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0017168,GO:0034641,GO:0042221,GO:0043603,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0051716,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:1901564,GO:1990748
EggNOG free text desc.5-oxoprolinase (ATP-hydrolyzing) activity
EggNOG OGsCOG0145@1,KOG1939@2759
EC3.5.2.9
COG Functional cat.EQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size346
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1754.4938.1prot_L-elsbetiae_contig1754.4938.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1754 13602..14811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.6500015-CDS-L-elsbetiae_contig1754:13601..136851622815730.6500015-CDS-L-elsbetiae_contig1754:13601..13685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1754 13602..13685 -
1691683065.6529074-CDS-L-elsbetiae_contig1754:13601..136851691683065.6529074-CDS-L-elsbetiae_contig1754:13601..13685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1754 13602..13685 -
1622815730.662775-CDS-L-elsbetiae_contig1754:14619..148111622815730.662775-CDS-L-elsbetiae_contig1754:14619..14811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1754 14620..14811 -
1691683065.6645393-CDS-L-elsbetiae_contig1754:14619..148111691683065.6645393-CDS-L-elsbetiae_contig1754:14619..14811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1754 14620..14811 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.6774535-UTR-L-elsbetiae_contig1754:14811..148281622815730.6774535-UTR-L-elsbetiae_contig1754:14811..14828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1754 14812..14828 -
1691683065.6762035-UTR-L-elsbetiae_contig1754:14811..148281691683065.6762035-UTR-L-elsbetiae_contig1754:14811..14828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1754 14812..14828 -
1622815730.690933-UTR-L-elsbetiae_contig1754:15000..150511622815730.690933-UTR-L-elsbetiae_contig1754:15000..15051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1754 15001..15051 -
1691683065.6847286-UTR-L-elsbetiae_contig1754:15000..150511691683065.6847286-UTR-L-elsbetiae_contig1754:15000..15051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1754 15001..15051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1754.4938.1

>prot_L-elsbetiae_contig1754.4938.1 ID=prot_L-elsbetiae_contig1754.4938.1|Name=mRNA_L-elsbetiae_contig1754.4938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MEEKVPASSEGERPFRFSIDRGGTFTDVYAEVPGSKGFRVLKLLSEDPHN
YPDAPREGVRRILEEETGVPHPRDEPLNTSRIDYIRMGTTVA
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mRNA from alignment at L-elsbetiae_contig1754:13602..15051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1754.4938.1 ID=mRNA_L-elsbetiae_contig1754.4938.1|Name=mRNA_L-elsbetiae_contig1754.4938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1450bp|location=Sequence derived from alignment at L-elsbetiae_contig1754:13602..15051- (Laminarionema elsbetiae ELsaHSoW15)
AGGGCAGAGCGCAAACACTGCTCCGACTGAATTCCGGGACTGCCGAATTT GGTGAGCGCTTCGTGCACATCTACCTTTTGTGTATATAGTGAATGCAGTC CTTGACATTTGAAAACTCCCCGCAGCTTCAACATGCAAAACAGCGAGTAC ATGTAGATACCTAGATACTAGATACCTCCCCCCCACATGCACACCCGACA CCCTGCTCCTGCCTACCTTGTAGAAAGATAGGAAGCCAATATGGAGGAGA AAGTGCCAGCATCGAGCGAAGGAGAACGACCATTCCGGTTCTCGATAGAT CGTGGGGGCACCTTCACGGACGTCTACGCCGAAGTCCCCGGGTCAAAGGG CTTCCGGGTGCTGAAGCTTCTTTCAGAGGACCCGCACAACTACCCAGATG CGCCTCGAGAGGGGGTGAGGCGGATCCTAGAGGTGAGACGATAATTTACC CCAAAAAATCGGTTTCCGCTGGACGTGCTATCAGACATATTGTAGGTATA AAGCCGGGCCGTTTGGAGGACGGTTTGGCTTTTGCTCGAATGAATGTACA TGTGTCATTTCTCCTCTGCTTCTTCGCAACGAGGTCGTCCCGACACAGCC ATGTAGCAGATCGCAGCCCGGAAGGGCCTTGCGCGCATGCAGCGGCGCCG ATTAACGCTACACGGCATGCACCAGCAGCACGCGAGGACTACAGCACCGC TCCGAGCAAACAACCGCACAGCGAAACATTCCGTATCATTATTGTAGATA AACTCGCCCTTGCTTCGCAAGGAGCTCCCGCGGCCTTAACTTTAAGCAGT GTCCCTTCGTGATCAGAAATCCATGCCCCCCTCCCCCCCCTCCACCTTGT TTCGCTGCGTACATGTTGCACAACTGGAGGATTATTAATTCAGAGATGTA GAATGAATGCTACGACAACCTCCGGACGGGCGTTGGGCATGCCACAGCTG AAAAGCAGGCTGTTGTAACAGAGAGTGCTCTCTTTCCTCCTTCCCTCCTG GCGTACAGGGGGGCTACTGTTGTAGCTGCAAAGCAGCATGTGTGCGCCTG CTCGGTTGTGCGAGTTGTCGTTATCTCTCTACGCCGCCAAAAAATCCCCC GTGCCCACTCTCTCCGCAAGTTGTAGAAAGCAGTGTGCGTGTGGGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGGTGTAAAACCGTAAAACCTGGGAGCGTATTAACTGACCCACCGCCGT TTTGCACCAAACGTGTTTTTTTTCGACGATGTTTTGGACACCACAAACAC ACACACACGCACACACACGTGTGGTTACTTCTCCTTGCAAAACCATTATC ATGGTTGCAAAACCAGGAAGAGACGGGAGTACCTCACCCGCGCGACGAGC CGCTAAACACCTCCCGCATCGACTACATCCGGATGGGCACGACGGTCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1754:13602..15051-

>mRNA_L-elsbetiae_contig1754.4938.1 ID=mRNA_L-elsbetiae_contig1754.4938.1|Name=mRNA_L-elsbetiae_contig1754.4938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig1754:13602..15051- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAGAAAGTGCCAGCATCGAGCGAAGGAGAACGACCATTCCGGTT
CTCGATAGATCGTGGGGGCACCTTCACGGACGTCTACGCCGAAGTCCCCG
GGTCAAAGGGCTTCCGGGTGCTGAAGCTTCTTTCAGAGGACCCGCACAAC
TACCCAGATGCGCCTCGAGAGGGGGTGAGGCGGATCCTAGAGATGGAGGA
GAAAGTGCCAGCATCGAGCGAAGGAGAACGACCATTCCGGTTCTCGATAG
ATCGTGGGGGCACCTTCACGGACGTCTACGCCGAAGTCCCCGGGTCAAAG
GGCTTCCGGGTGCTGAAGCTTCTTTCAGAGGACCCGCACAACTACCCAGA
TGCGCCTCGAGAGGGGGTGAGGCGGATCCTAGAGGAAGAGACGGGAGTAC
CTCACCCGCGCGACGAGCCGCTAAACACCTCCCGCATCGACTACATCCGG
ATGGGCACGACGGTCGCGGAAGAGACGGGAGTACCTCACCCGCGCGACGA
GCCGCTAAACACCTCCCGCATCGACTACATCCGGATGGGCACGACGGTCG
CG
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