mRNA_L-elsbetiae_contig17523.4934.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17523.4934.1
Unique NamemRNA_L-elsbetiae_contig17523.4934.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17523.4934.1 vs. uniprot
Match: A0A6H5KB73_9PHAE (DOT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB73_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.940e-7
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:    2 GMRKGAQALTYLDLRKMWSNLPFPFRQV 85
            GMRKG+ ALTYLDLRKMWS+LPFP+RQV
Sbjct:  473 GMRKGSHALTYLDLRKMWSSLPFPYRQV 500
[Close]
BLAST of mRNA_L-elsbetiae_contig17523.4934.1 vs. uniprot
Match: D7FY73_ECTSI (Topoisomerase 6 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY73_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 3.940e-7
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:    2 GMRKGAQALTYLDLRKMWSNLPFPFRQV 85
            GMRKG+ ALTYLDLRKMWS+LPFP+RQV
Sbjct:  484 GMRKGSHALTYLDLRKMWSSLPFPYRQV 511
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17523.4934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KB73_9PHAE3.940e-785.71DOT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FY73_ECTSI3.940e-785.71Topoisomerase 6 subunit B n=1 Tax=Ectocarpus silic... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17523contigL-elsbetiae_contig17523:1530..1952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size425
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.2011576-UTR-L-elsbetiae_contig17523:1529..16251622815730.2011576-UTR-L-elsbetiae_contig17523:1529..1625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17523 1530..1625 +
1691683065.3838382-UTR-L-elsbetiae_contig17523:1529..16251691683065.3838382-UTR-L-elsbetiae_contig17523:1529..1625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17523 1530..1625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.2192323-CDS-L-elsbetiae_contig17523:1625..19521622815730.2192323-CDS-L-elsbetiae_contig17523:1625..1952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17523 1626..1952 +
1691683065.3944776-CDS-L-elsbetiae_contig17523:1625..19521691683065.3944776-CDS-L-elsbetiae_contig17523:1625..1952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17523 1626..1952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17523.4934.1prot_L-elsbetiae_contig17523.4934.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17523 1626..1952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17523.4934.1

>prot_L-elsbetiae_contig17523.4934.1 ID=prot_L-elsbetiae_contig17523.4934.1|Name=mRNA_L-elsbetiae_contig17523.4934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MCVCVIHDTSGYVYDSRHPWAGVCVCGCVCVWFASSFCVSNVLQPSWQAG
ERHTPVSAGATQTRQVLFTQEKFRIFSNISDVSSTPCRTNITSVPTLNLI
VKATHHGAG
back to top

mRNA from alignment at L-elsbetiae_contig17523:1530..1952+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17523.4934.1 ID=mRNA_L-elsbetiae_contig17523.4934.1|Name=mRNA_L-elsbetiae_contig17523.4934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=423bp|location=Sequence derived from alignment at L-elsbetiae_contig17523:1530..1952+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGATGCGGAAGGGCGCGCAGGCGCTCACGTACCTGGACCTCAGAAAGA
TGTGGAGTAATCTGCCGTTTCCGTTCCGACAGGTTTGTGTGTATGTATGT
GTGTGTGTGTGATTCACGATACCTCCGGGTATGTGTATGATTCACGGCAC
CCGTGGGCGGGTGTGTGCGTGTGCGGATGTGTGTGTGTGTGGTTTGCGTC
TTCCTTCTGTGTATCGAACGTGCTACAACCCAGCTGGCAGGCCGGTGAGA
GACACACGCCGGTCTCAGCGGGCGCGACACAGACCCGGCAGGTGCTATTT
ACGCAGGAGAAGTTTCGGATTTTTTCTAATATTTCAGATGTTTCTTCTAC
ACCATGCCGGACCAACATCACATCAGTACCTACGTTGAATTTGATCGTAA
AAGCAACTCACCACGGAGCCGGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17523:1530..1952+

>mRNA_L-elsbetiae_contig17523.4934.1 ID=mRNA_L-elsbetiae_contig17523.4934.1|Name=mRNA_L-elsbetiae_contig17523.4934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig17523:1530..1952+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGTGTGTGTGATTCACGATACCTCCGGGTATGTGTATGATTCACG
GCACCCGTGGGCGGGTGTGTGCGTGTGCGGATGTGTGTGTGTGTGGTTTG
CGTCTTCCTTCTGTGTATCGAACGTGCTACAACCCAGCTGGCAGGCCGGT
GAGAGACACACGCCGGTCTCAGCGGGCGCGACACAGACCCGGCAGGTGCT
ATTTACGCAGGAGAAGTTTCGGATTTTTTCTAATATTTCAGATGTTTCTT
CTACACCATGCCGGACCAACATCACATCAGTACCTACGTTGAATTTGATC
GTAAAAGCAACTCACCACGGAGCCGGAATGTGTGTGTGTGTGATTCACGA
TACCTCCGGGTATGTGTATGATTCACGGCACCCGTGGGCGGGTGTGTGCG
TGTGCGGATGTGTGTGTGTGTGGTTTGCGTCTTCCTTCTGTGTATCGAAC
GTGCTACAACCCAGCTGGCAGGCCGGTGAGAGACACACGCCGGTCTCAGC
GGGCGCGACACAGACCCGGCAGGTGCTATTTACGCAGGAGAAGTTTCGGA
TTTTTTCTAATATTTCAGATGTTTCTTCTACACCATGCCGGACCAACATC
ACATCAGTACCTACGTTGAATTTGATCGTAAAAGCAACTCACCACGGAGC
CGGA
back to top