mRNA_L-elsbetiae_contig17517.4930.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig17517.4930.1 vs. uniprot
Match: A0A6H5JMI5_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI5_9PHAE) HSP 1 Score: 239 bits (610), Expect = 5.190e-75 Identity = 128/207 (61.84%), Postives = 154/207 (74.40%), Query Frame = 1 Query: 1 GKGTGRCWKVTFNHEEST-LGIARPRGSVTFVLQPLLPGVQ-TDDIVSDGFPVDEEEPPAKKTTGADSRRRYTLREKASVVEELRELEGRAEEVRAHYGLTPLYYLKEKRGIHRSNISKWQSDEEKIVRLAADKVVGGLMAKTARPKKWFPAVEKELHKMFLARHRKKVRVSTRWITITFKKLLTDKYPDDPRAKAFRPSFRFARKW 615 G +GRC V F+H ES G P GSVTFVLQPL PG + +++V+DGF + E P KKT GA SRRRYT REK V++ELR+LE R+ EVRAH+G+TPL+YL+ K GI SNISKWQ DE+ +V+ AADKV LMA R + WFP EKELHKM LAR ++K+RVSTRWIT+TFKKL + YP DPRAKAFRPSFRFA+KW Sbjct: 130 GTPSGRCCHVAFHHGESRGCGATCPPGSVTFVLQPLRPGAERNNNLVNDGF--SQSESPPKKTCGAASRRRYTSREKVGVIQELRDLESRSTEVRAHFGMTPLFYLEHKSGISASNISKWQKDEDSLVQQAADKVRSSLMATCTRRRLWFPDAEKELHKMLLARRKRKLRVSTRWITVTFKKLTMESYPQDPRAKAFRPSFRFAQKW 334
BLAST of mRNA_L-elsbetiae_contig17517.4930.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.210e-42 Identity = 84/142 (59.15%), Postives = 106/142 (74.65%), Query Frame = 1 Query: 190 ADSRRRYTLREKASVVEELRELEGRAEEVRAHYGLTPLYYLKEKRGIHRSNISKWQSDEEKIVRLAADKVVGGLMAKTARPKKWFPAVEKELHKMFLARHRKKVRVSTRWITITFKKLLTDKYPDDPRAKAFRPSFRFARKW 615 A R Y REK SVVE+LRELE RA+EVRAH+ LTPL YL K GI +NISKWQ +EEK++ +AA V L +RPK+WFP E+ L+ M+ R +KKVRVSTRW+T+TF+KLL +KYP+DPRAK FR S+R+A+KW Sbjct: 1328 ASPRGSYDPREKLSVVEQLRELESRAQEVRAHFNLTPLGYLSNKTGIAVANISKWQREEEKLLEVAAKSVKKKLFDTKSRPKRWFPEAEQALYTMYRERRKKKVRVSTRWLTVTFRKLLAEKYPEDPRAKTFRASYRWAQKW 1469
BLAST of mRNA_L-elsbetiae_contig17517.4930.1 vs. uniprot
Match: A0A6H5L1Y1_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y1_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.190e-38 Identity = 96/203 (47.29%), Postives = 127/203 (62.56%), Query Frame = 1 Query: 7 GTGRCWKVTFNHEESTLGIARPRGSVTFVLQPLLPGVQTDDIVSDGFPVDEEEPPAKKTTGADSRRRYTLREKASVVEELRELEGRAEEVRAHYGLTPLYYLKEKRGIHRSNISKWQSDEEKIVRLAADKVVGGLMAKTARPKKWFPAVEKELHKMFLARHRKKVRVSTRWITITFKKLLTDKYPDDPRAKAFRPSFRFARKW 615 G GRCW V +++T G+ +FVLQ D+ SDGF +D E K+T GA RRRY R KA+ V +LR LE A ++ TPL YL+++ +H SNI KW DE+ IV AAD V L+AK +PK+WFP EK L+KMF+ R ++K++VST W+TITF+KL+ + YP D RA AFR SFR+ARKW Sbjct: 348 GPGRCWHVKV--DDAT-------GAASFVLQRKR--FLDLDLESDGF-MDRE---TKETRGAPKRRRYDYRFKANAVNQLRILEDNAADLWKEEERTPLQYLEDRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQ-QPKRWFPEAEKRLYKMFVERRKRKLKVSTLWLTITFRKLVREMYPGDQRAAAFRASFRWARKW 534
BLAST of mRNA_L-elsbetiae_contig17517.4930.1 vs. uniprot
Match: A0A6H5J6R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6R3_9PHAE) HSP 1 Score: 148 bits (373), Expect = 1.390e-37 Identity = 96/204 (47.06%), Postives = 127/204 (62.25%), Query Frame = 1 Query: 7 GTGRCWKVTFNHEESTLGIARPRGSVTFVLQ-PLLPGVQTDDIVSDGFPVDEEEPPAKKTTGADSRRRYTLREKASVVEELRELEGRAEEVRAHYGLTPLYYLKEKRGIHRSNISKWQSDEEKIVRLAADKVVGGLMAKTARPKKWFPAVEKELHKMFLARHRKKVRVSTRWITITFKKLLTDKYPDDPRAKAFRPSFRFARKW 615 G GRCW V +++T G+ +FVLQ G+ D+ SDGF +D E K+T GA RRRY R KA+ V +LR LE A ++ TPL L ++ +H SNI KW DE+ IV AAD V L+AK +PK+WFP EK L+KMF+ R ++K++VST W+TITF+KL+ + YP D RA AFR SFR+ARKW Sbjct: 228 GPGRCWHVKV--DDAT-------GAASFVLQRKRFLGL---DLESDGF-MDRE---TKETRGAPKRRRYDYRFKANAVNQLRILEDNAADIWKEEERTPLQCLADRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQ-QPKRWFPEAEKRLYKMFVERRKRKLKVSTLWLTITFRKLVREMYPGDQRAAAFRASFRWARKW 414
BLAST of mRNA_L-elsbetiae_contig17517.4930.1 vs. uniprot
Match: A0A6H5JRI3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRI3_9PHAE) HSP 1 Score: 140 bits (354), Expect = 2.230e-37 Identity = 91/203 (44.83%), Postives = 126/203 (62.07%), Query Frame = 1 Query: 7 GTGRCWKVTFNHEESTLGIARPRGSVTFVLQPLLPGVQTDDIVSDGFPVDEEEPPAKKTTGADSRRRYTLREKASVVEELRELEGRAEEVRAHYGLTPLYYLKEKRGIHRSNISKWQSDEEKIVRLAADKVVGGLMAKTARPKKWFPAVEKELHKMFLARHRKKVRVSTRWITITFKKLLTDKYPDDPRAKAFRPSFRFARKW 615 G GRCW V + G+ +FVLQ + D+ SDGF D + K+T GA R+RY +R KA VV +LR L+ A ++ LTPL YL+++ ++ S I KW DE IV+ AAD V L+AK +PK+WFP EK+L+ MFLAR R+K++VST W+T+TF+KL+ + +P+D RA AF SFR+ARKW Sbjct: 47 GPGRCWHVK---------VDGATGAASFVLQRKR--FRDLDLESDGF-TDRK---VKETRGAVKRKRYDVRFKALVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQ-QPKRWFPEEEKKLYNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWARKW 233
BLAST of mRNA_L-elsbetiae_contig17517.4930.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI) HSP 1 Score: 145 bits (365), Expect = 1.120e-36 Identity = 92/203 (45.32%), Postives = 124/203 (61.08%), Query Frame = 1 Query: 7 GTGRCWKVTFNHEESTLGIARPRGSVTFVLQPLLPGVQTDDIVSDGFPVDEEEPPAKKTTGADSRRRYTLREKASVVEELRELEGRAEEVRAHYGLTPLYYLKEKRGIHRSNISKWQSDEEKIVRLAADKVVGGLMAKTARPKKWFPAVEKELHKMFLARHRKKVRVSTRWITITFKKLLTDKYPDDPRAKAFRPSFRFARKW 615 G GRC+ V + GI G+ +FVLQP V D+ SDGF E P GA R RY R KA V+++LR LE + + L+P+ YL+ + R+NISKW DE++IV AAD+V L+AK +PK+WFPA E+EL FLAR +KK++VST W+T+TF+KLL + +P D RA FRPSFR+ +KW Sbjct: 221 GPGRCYHVKID------GIT---GAASFVLQPKR--VPNIDLESDGFTPAE---PRSARRGAAKRNRYDFRFKAHVIQQLRILEEDRQALWQAEHLSPMQYLETHMKVPRTNISKWVKDEDEIVAFAADEVKQTLLAKQ-QPKRWFPAAERELFNRFLARRKKKLKVSTLWLTVTFRKLLEEHHPTDSRAAVFRPSFRWMQKW 408
BLAST of mRNA_L-elsbetiae_contig17517.4930.1 vs. uniprot
Match: A0A6H5KWF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWF5_9PHAE) HSP 1 Score: 143 bits (361), Expect = 5.070e-36 Identity = 94/203 (46.31%), Postives = 123/203 (60.59%), Query Frame = 1 Query: 7 GTGRCWKVTFNHEESTLGIARPRGSVTFVLQPLLPGVQTDDIVSDGFPVDEEEPPAKKTTGADSRRRYTLREKASVVEELRELEGRAEEVRAHYGLTPLYYLKEKRGIHRSNISKWQSDEEKIVRLAADKVVGGLMAKTARPKKWFPAVEKELHKMFLARHRKKVRVSTRWITITFKKLLTDKYPDDPRAKAFRPSFRFARKW 615 G GRCW V +++T G+ +FVLQ D+ SDGF +D E K+T GA RRRY R KA+ V +LR LE A + TPL YL+++ +H SNI KW DE+ IV AAD V L+AK +PK+WFP E L+KM + R ++K++VST W+T TF+KL+ D YP D RA AFR SFR+ARKW Sbjct: 183 GPGRCWHVKV--DDAT-------GAASFVLQRKR--FLDLDLESDGF-MDRE---TKETRGAPKRRRYDNRFKANAVNQLRILEDNAANLWKEEERTPLQYLEDRLRVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQ-QPKRWFPEAETRLYKMSVERRKRKLKVSTVWLTTTFRKLVRDMYPGDQRAAAFRASFRWARKW 369
BLAST of mRNA_L-elsbetiae_contig17517.4930.1 vs. uniprot
Match: A0A6H5KBV2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBV2_9PHAE) HSP 1 Score: 143 bits (360), Expect = 6.030e-36 Identity = 94/205 (45.85%), Postives = 124/205 (60.49%), Query Frame = 1 Query: 1 GKGTGRCWKVTFNHEESTLGIARPRGSVTFVLQPLLPGVQTDDIVSDGFPVDEEEPPAKKTTGADSRRRYTLREKASVVEELRELEGRAEEVRAHYGLTPLYYLKEKRGIHRSNISKWQSDEEKIVRLAADKVVGGLMAKTARPKKWFPAVEKELHKMFLARHRKKVRVSTRWITITFKKLLTDKYPDDPRAKAFRPSFRFARKW 615 G G GRCW V +++T G+ +FVLQ D+ SDGF +D E K+T GA RRRY R KA+ V +LR LE A ++ TPL YL+++ +H SNI KW DE+ IV AAD V L+AK + K+WFP EK +KMF+ R ++K++VST W+T T +KL+ D YP D RA AFR SFR+ARKW Sbjct: 452 GAGPGRCWHVKV--DDAT-------GAASFVLQRKR--FLDLDLESDGF-MDRE---TKETRGAPKRRRYDYRFKANAVNQLRILEDNAADLWKEEERTPLQYLEDRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQ-QSKRWFPEAEKRPYKMFVERRKRKLKVSTLWLTTTCQKLVRDMYPGDQRAAAFRASFRWARKW 640
BLAST of mRNA_L-elsbetiae_contig17517.4930.1 vs. uniprot
Match: A0A6H5LCI6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCI6_9PHAE) HSP 1 Score: 140 bits (354), Expect = 6.170e-36 Identity = 91/203 (44.83%), Postives = 125/203 (61.58%), Query Frame = 1 Query: 7 GTGRCWKVTFNHEESTLGIARPRGSVTFVLQPLLPGVQTDDIVSDGFPVDEEEPPAKKTTGADSRRRYTLREKASVVEELRELEGRAEEVRAHYGLTPLYYLKEKRGIHRSNISKWQSDEEKIVRLAADKVVGGLMAKTARPKKWFPAVEKELHKMFLARHRKKVRVSTRWITITFKKLLTDKYPDDPRAKAFRPSFRFARKW 615 G GRCW V + G+ +FVLQ + D+ SDGF D + K+T GA R+RY R KA VV +LR L+ A ++ LTPL YL+++ ++ S I KW DE IV+ AAD V L+AK +PK+WFP EK+L+ MFLAR R+K++VST W+T+TF+KL+ + +P+D RA AF SFR+ARKW Sbjct: 222 GPGRCWHVK---------VDGATGAASFVLQRKR--FRDLDLESDGF-TDRK---VKETRGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQ-QPKRWFPEEEKKLYNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWARKW 408
BLAST of mRNA_L-elsbetiae_contig17517.4930.1 vs. uniprot
Match: A0A6H5K3E7_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E7_9PHAE) HSP 1 Score: 138 bits (347), Expect = 8.060e-36 Identity = 90/203 (44.33%), Postives = 124/203 (61.08%), Query Frame = 1 Query: 7 GTGRCWKVTFNHEESTLGIARPRGSVTFVLQPLLPGVQTDDIVSDGFPVDEEEPPAKKTTGADSRRRYTLREKASVVEELRELEGRAEEVRAHYGLTPLYYLKEKRGIHRSNISKWQSDEEKIVRLAADKVVGGLMAKTARPKKWFPAVEKELHKMFLARHRKKVRVSTRWITITFKKLLTDKYPDDPRAKAFRPSFRFARKW 615 G GRCW V + G+ +FVLQ + D+ SDGF D + K+T GA R+RY R KA VV +LR L+ A ++ LTPL YL+++ ++ S I KW DE IV+ AAD V +AK +PK+WFP EK+L+ MFLAR R+K++VST W+T+TF+KL+ + +P+D RA AF SFR+ARKW Sbjct: 92 GPGRCWHVK---------VDGATGAASFVLQRKR--FRDLDLESDGF-TDRK---VKETRGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKQTHLAKQ-QPKRWFPEEEKKLYNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWARKW 278 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17517.4930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17517.4930.1 >prot_L-elsbetiae_contig17517.4930.1 ID=prot_L-elsbetiae_contig17517.4930.1|Name=mRNA_L-elsbetiae_contig17517.4930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp GKGTGRCWKVTFNHEESTLGIARPRGSVTFVLQPLLPGVQTDDIVSDGFPback to top mRNA from alignment at L-elsbetiae_contig17517:1110..1726+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig17517.4930.1 ID=mRNA_L-elsbetiae_contig17517.4930.1|Name=mRNA_L-elsbetiae_contig17517.4930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=617bp|location=Sequence derived from alignment at L-elsbetiae_contig17517:1110..1726+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig17517:1110..1726+ >mRNA_L-elsbetiae_contig17517.4930.1 ID=mRNA_L-elsbetiae_contig17517.4930.1|Name=mRNA_L-elsbetiae_contig17517.4930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig17517:1110..1726+ (Laminarionema elsbetiae ELsaHSoW15)back to top |