mRNA_L-elsbetiae_contig1751.4928.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1751.4928.1
Unique NamemRNA_L-elsbetiae_contig1751.4928.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1751.4928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1751contigL-elsbetiae_contig1751:13126..14048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size403
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1751.4928.1prot_L-elsbetiae_contig1751.4928.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1751 13245..14010 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.6509771-UTR-L-elsbetiae_contig1751:13125..132441622815729.6509771-UTR-L-elsbetiae_contig1751:13125..13244Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1751 13126..13244 -
1691683064.991762-UTR-L-elsbetiae_contig1751:13125..132441691683064.991762-UTR-L-elsbetiae_contig1751:13125..13244Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1751 13126..13244 -
1622815729.6947587-UTR-L-elsbetiae_contig1751:14010..140481622815729.6947587-UTR-L-elsbetiae_contig1751:14010..14048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1751 14011..14048 -
1691683065.0177417-UTR-L-elsbetiae_contig1751:14010..140481691683065.0177417-UTR-L-elsbetiae_contig1751:14010..14048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1751 14011..14048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.6659572-CDS-L-elsbetiae_contig1751:13244..133931622815729.6659572-CDS-L-elsbetiae_contig1751:13244..13393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1751 13245..13393 -
1691683065.0012412-CDS-L-elsbetiae_contig1751:13244..133931691683065.0012412-CDS-L-elsbetiae_contig1751:13244..13393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1751 13245..13393 -
1622815729.682844-CDS-L-elsbetiae_contig1751:13913..140101622815729.682844-CDS-L-elsbetiae_contig1751:13913..14010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1751 13914..14010 -
1691683065.0095327-CDS-L-elsbetiae_contig1751:13913..140101691683065.0095327-CDS-L-elsbetiae_contig1751:13913..14010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1751 13914..14010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1751.4928.1

>prot_L-elsbetiae_contig1751.4928.1 ID=prot_L-elsbetiae_contig1751.4928.1|Name=mRNA_L-elsbetiae_contig1751.4928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MRCAYPCHAYLRLSEKRWQQRRRRRRMHALRKGGPRPEVEVGPRITLGYG
GGPHQGLPRGVQLWSLPDPGNRRRLKEMRRR*
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mRNA from alignment at L-elsbetiae_contig1751:13126..14048-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1751.4928.1 ID=mRNA_L-elsbetiae_contig1751.4928.1|Name=mRNA_L-elsbetiae_contig1751.4928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=923bp|location=Sequence derived from alignment at L-elsbetiae_contig1751:13126..14048- (Laminarionema elsbetiae ELsaHSoW15)
CAAGGCACACAGCGGCCTGTTGGTTTCAGGCCCGAGCCATGCGCTGCGCC
TATCCTTGCCATGCGTACTTGCGTTTGAGTGAAAAACGGTGGCAGCAGCG
GCGGCGGCGGCGAAGGATGCACGCACTTCGGAAAGGTGTGAGCGGGCGCA
GAAAATGTTGGCATGCACACACGCAGAGAGAGAGAGAGAGAGAGAGAGAG
ACCCACTGGTACATACACGCTCCTGTATGAGAGCCTTTGGTTTGCACACC
CCCCAAACTGCTTTTGTAAGGTGAACACAGATAGCTACAATACCCCTCGG
AAATAGGAAAAAAATCACATCCAGTGATGAATGGTGATCACACGGACGCG
TGCTGGAACAGAAATGGAATGCACCCGCGCACATAACAACAATCAACCAA
TCCCCGCCCTACTCGAAAGTTGTGGCACCCCCCCCCCCCGCCCCTTCCTT
TTTCTTCAGATGCTCTTTGTTTTTTGGAGTCAATCTACATACCAACACTC
GTATTTTCTCCCTTCCCCTCGTGACGCGGCGGTGTGTATGCGCGCGCTCG
CGCGCGGGCACACATTGCGTGTTTTGTTCTTTACTCTTTGGCGTGCGTCG
CGTCGGCGGCGGCTGGGCCCAACGGACGCCACAACACGCCGTCAACGACG
CACAGGCGGCCCGAGGCCGGAGGTAGAGGTCGGGCCGCGGATCACCCTCG
GGTATGGCGGTGGCCCGCACCAGGGCCTACCGCGAGGAGTACAACTTTGG
TCCCTCCCCGACCCTGGTAATAGACGTCGATTGAAAGAGATGCGTAGACG
ATGAAAAATGTTGGTGGCTGCAACGAAGCTGGATAGGACGACAGATCTCC
CCCGATCCTGGCCGACATCGATTGAAAGAGATAGATGATGAAACATCTTG
GCGGCTGCAGTGCAACTGGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1751:13126..14048-

>mRNA_L-elsbetiae_contig1751.4928.1 ID=mRNA_L-elsbetiae_contig1751.4928.1|Name=mRNA_L-elsbetiae_contig1751.4928.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig1751:13126..14048- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCTGCGCCTATCCTTGCCATGCGTACTTGCGTTTGAGTGAAAAACG
GTGGCAGCAGCGGCGGCGGCGGCGAAGGATGCACGCACTTCGGAAAGATG
CGCTGCGCCTATCCTTGCCATGCGTACTTGCGTTTGAGTGAAAAACGGTG
GCAGCAGCGGCGGCGGCGGCGAAGGATGCACGCACTTCGGAAAGGCGGCC
CGAGGCCGGAGGTAGAGGTCGGGCCGCGGATCACCCTCGGGTATGGCGGT
GGCCCGCACCAGGGCCTACCGCGAGGAGTACAACTTTGGTCCCTCCCCGA
CCCTGGTAATAGACGTCGATTGAAAGAGATGCGTAGACGATGAGCGGCCC
GAGGCCGGAGGTAGAGGTCGGGCCGCGGATCACCCTCGGGTATGGCGGTG
GCCCGCACCAGGGCCTACCGCGAGGAGTACAACTTTGGTCCCTCCCCGAC
CCTGGTAATAGACGTCGATTGAAAGAGATGCGTAGACGATGA
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