mRNA_L-elsbetiae_contig175.4922.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig175.4922.1
Unique NamemRNA_L-elsbetiae_contig175.4922.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig175.4922.1 vs. uniprot
Match: D7G670_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G670_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 5.690e-98
Identity = 187/303 (61.72%), Postives = 219/303 (72.28%), Query Frame = 1 
Query:    1 IMALESSVLGCGSDDWSVDSDYAFQDFADDVKHNQQRQ--NHTNEQ--LQQSSPER---SPPDPGTPSSFHATGDPINNLNKGSMRNVHDHVDAAAETAVVTRTPAGGGAIRGEVLPPGKVASAGGEAREDTPAGSGRDG---PRMCNARLLGDPGSSTDSAHIMRLEQRMFLKAAFQLLEERDRLFPASIGSWGNAGVG-VPVGXXXXXXXXSNLRDNRGGFINGGAITARMAGEGVRFQFQ-NESGFNANRPRILKLGHLRKATARSVGRLEKTTWKTKYVELTAGSFAYSDGGPSVLGKR 873
            ++ALESSVLGCGSDDWSVDSDYAFQDFADDVKH+QQ+Q  +  +EQ  LQ SSP R   + P+PGTP +    G  +++ ++     +H+H +AA      T T  G  A         +    GG +R  + + +G+D    P + N RL GDPGSS+DS HI+RLEQRMFLKAAFQLLEERDRLFPASIGSWG AG G V   XXXXXXXXSNLRD RGG++NGGA++A  AGEG RF FQ +E  F ANRPRILK G LRKATARSVGRLEKTTWKTKYVELT GSFAYSD GP V+GKR
Sbjct:    1 MIALESSVLGCGSDDWSVDSDYAFQDFADDVKHHQQQQARHEKSEQNLLQSSSPTRERSAVPNPGTPINKRVVGS-LDDNSRAETTELHEHPEAAEGARADTLTAGGAQAXXXXXXXXPEEGEVGG-SRRGSASEAGKDNRHHPVLSNTRLFGDPGSSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASIGSWGTAGGGWVXXXXXXXXXXXSNLRDRRGGYVNGGAVSAGKAGEGARFHFQQHEPNFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGKR 301
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BLAST of mRNA_L-elsbetiae_contig175.4922.1 vs. uniprot
Match: A0A6H5KYB1_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB1_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 3.270e-52
Identity = 105/132 (79.55%), Postives = 111/132 (84.09%), Query Frame = 1 
Query:  481 MFLKAAFQLLEERDRLFPASIGSWGNAGVG-VPVGXXXXXXXXSNLRDNRGGFINGGAITARMAGEGVRFQFQ-NESGFNANRPRILKLGHLRKATARSVGRLEKTTWKTKYVELTAGSFAYSDGGPSVLGK 870
            MFLKAAFQLLEERDRLFPASIGSWG A  G VP  XXXXXXXXSNLRD RGG++NG A++A  AGEG RF FQ +E  F ANRPRILK G LRKATARSVGRLEKTTWKTKYVELT GSFAYSD GP V+GK
Sbjct:    1 MFLKAAFQLLEERDRLFPASIGSWGTAAGGWVPXXXXXXXXXXSNLRDQRGGYVNGAAVSAGKAGEGPRFHFQQHEPTFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGK 132
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig175.4922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G670_ECTSI5.690e-9861.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYB1_9PHAE3.270e-5279.55PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig175contigL-elsbetiae_contig175:12609..13889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009690.1
Exons2
Model size891
Cds size888
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig175.4922.1prot_L-elsbetiae_contig175.4922.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig175 12609..13886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.8785763-CDS-L-elsbetiae_contig175:12608..130071622815728.8785763-CDS-L-elsbetiae_contig175:12608..13007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig175 12609..13007 -
1691683064.463385-CDS-L-elsbetiae_contig175:12608..130071691683064.463385-CDS-L-elsbetiae_contig175:12608..13007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig175 12609..13007 -
1622815728.8900077-CDS-L-elsbetiae_contig175:13397..138861622815728.8900077-CDS-L-elsbetiae_contig175:13397..13886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig175 13398..13886 -
1691683064.4767792-CDS-L-elsbetiae_contig175:13397..138861691683064.4767792-CDS-L-elsbetiae_contig175:13397..13886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig175 13398..13886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.9004905-UTR-L-elsbetiae_contig175:13886..138891622815728.9004905-UTR-L-elsbetiae_contig175:13886..13889Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig175 13887..13889 -
1691683064.488867-UTR-L-elsbetiae_contig175:13886..138891691683064.488867-UTR-L-elsbetiae_contig175:13886..13889Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig175 13887..13889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig175.4922.1

>prot_L-elsbetiae_contig175.4922.1 ID=prot_L-elsbetiae_contig175.4922.1|Name=mRNA_L-elsbetiae_contig175.4922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=296bp
MALESSVLGCGSDDWSVDSDYAFQDFADDVKHNQQRQNHTNEQLQQSSPE
RSPPDPGTPSSFHATGDPINNLNKGSMRNVHDHVDAAAETAVVTRTPAGG
GAIRGEVLPPGKVASAGGEAREDTPAGSGRDGPRMCNARLLGDPGSSTDS
AHIMRLEQRMFLKAAFQLLEERDRLFPASIGSWGNAGVGVPVGGGGGGGG
GSNLRDNRGGFINGGAITARMAGEGVRFQFQNESGFNANRPRILKLGHLR
KATARSVGRLEKTTWKTKYVELTAGSFAYSDGGPSVLGKRYVCHM*
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mRNA from alignment at L-elsbetiae_contig175:12609..13889-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig175.4922.1 ID=mRNA_L-elsbetiae_contig175.4922.1|Name=mRNA_L-elsbetiae_contig175.4922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1281bp|location=Sequence derived from alignment at L-elsbetiae_contig175:12609..13889- (Laminarionema elsbetiae ELsaHSoW15)
ATTATGGCTCTCGAGAGCTCCGTCCTTGGCTGCGGCAGCGACGACTGGTC
GGTGGACAGTGACTACGCTTTCCAAGACTTCGCGGATGACGTCAAGCATA
ACCAACAACGACAAAACCACACAAACGAGCAGCTTCAGCAGTCGAGCCCT
GAGCGGAGCCCACCTGACCCCGGCACGCCAAGCAGTTTCCACGCTACCGG
CGACCCGATCAACAACCTAAACAAAGGAAGCATGCGCAATGTTCATGACC
ATGTTGATGCAGCAGCAGAAACGGCAGTGGTAACGAGAACGCCAGCAGGG
GGGGGAGCGATTAGAGGGGAAGTGCTACCGCCTGGGAAGGTGGCGTCGGC
GGGGGGAGAGGCCAGAGAAGACACACCCGCAGGATCTGGCAGGGACGGCC
CGCGAATGTGCAACGCTCGCCTCCTCGGGGATCCTGGTAGCAGCACTGAC
AGTGCGCACATTATGAGGCTTGAGCAACGCATGTTTCTGAAGGTAGGGTA
GTTGGTGCTTCTATCGCTGAGACTTTGCCGCTTTCGAGCACGTAGCAAAA
ACAATAAGCAAAAACAGTAGGGTATCCTGATTCTGCTCAAAAAAACTTGT
TGGTTGAATTAATGTTTGCCACTGCGGTGGTACTGCCAATTGGACAAAGC
GGGGGACCAGGTCGAATATCGACGCAGGCGTACAGTCCTTCCGCAAGGGG
CGGGAGAACACACACACACACACACACACACACACACACACCGTCAGTGG
CCACGACTACCTGACGGTCACCACGGAACTCCGTTGAGCTATGGCTACAG
CAGTACATACGAACCCGAAAAAACGCCACCGGTGCACCCGAACAATTCAT
AAATTTCACGCCACCCCTATACTCACACACAGGCCGCATTCCAGCTACTA
GAGGAACGTGATCGTCTCTTCCCGGCATCAATCGGGTCGTGGGGCAACGC
AGGAGTGGGGGTGCCGGTTGGCGGCGGGGGTGGTGGCGGCGGCGGCAGCA
ACCTTCGCGATAACCGAGGCGGCTTCATCAACGGGGGCGCGATTACCGCA
CGGATGGCAGGAGAAGGTGTTCGCTTCCAGTTTCAGAACGAATCGGGGTT
TAATGCAAACAGGCCGCGCATTCTCAAGCTGGGCCACCTGCGAAAAGCTA
CGGCGAGGAGCGTCGGGCGGCTGGAGAAAACCACTTGGAAGACCAAGTAC
GTCGAACTCACGGCGGGGAGCTTCGCCTACTCCGACGGTGGGCCTTCTGT
GCTTGGGAAGAGGTATGTGTGCCATATGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig175:12609..13889-

>mRNA_L-elsbetiae_contig175.4922.1 ID=mRNA_L-elsbetiae_contig175.4922.1|Name=mRNA_L-elsbetiae_contig175.4922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1776bp|location=Sequence derived from alignment at L-elsbetiae_contig175:12609..13889- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCTCGAGAGCTCCGTCCTTGGCTGCGGCAGCGACGACTGGTCGGT
GGACAGTGACTACGCTTTCCAAGACTTCGCGGATGACGTCAAGCATAACC
AACAACGACAAAACCACACAAACGAGCAGCTTCAGCAGTCGAGCCCTGAG
CGGAGCCCACCTGACCCCGGCACGCCAAGCAGTTTCCACGCTACCGGCGA
CCCGATCAACAACCTAAACAAAGGAAGCATGCGCAATGTTCATGACCATG
TTGATGCAGCAGCAGAAACGGCAGTGGTAACGAGAACGCCAGCAGGGGGG
GGAGCGATTAGAGGGGAAGTGCTACCGCCTGGGAAGGTGGCGTCGGCGGG
GGGAGAGGCCAGAGAAGACACACCCGCAGGATCTGGCAGGGACGGCCCGC
GAATGTGCAACGCTCGCCTCCTCGGGGATCCTGGTAGCAGCACTGACAGT
GCGCACATTATGAGGCTTGAGCAACGCATGTTTCTGAAGATGGCTCTCGA
GAGCTCCGTCCTTGGCTGCGGCAGCGACGACTGGTCGGTGGACAGTGACT
ACGCTTTCCAAGACTTCGCGGATGACGTCAAGCATAACCAACAACGACAA
AACCACACAAACGAGCAGCTTCAGCAGTCGAGCCCTGAGCGGAGCCCACC
TGACCCCGGCACGCCAAGCAGTTTCCACGCTACCGGCGACCCGATCAACA
ACCTAAACAAAGGAAGCATGCGCAATGTTCATGACCATGTTGATGCAGCA
GCAGAAACGGCAGTGGTAACGAGAACGCCAGCAGGGGGGGGAGCGATTAG
AGGGGAAGTGCTACCGCCTGGGAAGGTGGCGTCGGCGGGGGGAGAGGCCA
GAGAAGACACACCCGCAGGATCTGGCAGGGACGGCCCGCGAATGTGCAAC
GCTCGCCTCCTCGGGGATCCTGGTAGCAGCACTGACAGTGCGCACATTAT
GAGGCTTGAGCAACGCATGTTTCTGAAGGCCGCATTCCAGCTACTAGAGG
AACGTGATCGTCTCTTCCCGGCATCAATCGGGTCGTGGGGCAACGCAGGA
GTGGGGGTGCCGGTTGGCGGCGGGGGTGGTGGCGGCGGCGGCAGCAACCT
TCGCGATAACCGAGGCGGCTTCATCAACGGGGGCGCGATTACCGCACGGA
TGGCAGGAGAAGGTGTTCGCTTCCAGTTTCAGAACGAATCGGGGTTTAAT
GCAAACAGGCCGCGCATTCTCAAGCTGGGCCACCTGCGAAAAGCTACGGC
GAGGAGCGTCGGGCGGCTGGAGAAAACCACTTGGAAGACCAAGTACGTCG
AACTCACGGCGGGGAGCTTCGCCTACTCCGACGGTGGGCCTTCTGTGCTT
GGGAAGAGGTATGTGTGCCATATGTAAGCCGCATTCCAGCTACTAGAGGA
ACGTGATCGTCTCTTCCCGGCATCAATCGGGTCGTGGGGCAACGCAGGAG
TGGGGGTGCCGGTTGGCGGCGGGGGTGGTGGCGGCGGCGGCAGCAACCTT
CGCGATAACCGAGGCGGCTTCATCAACGGGGGCGCGATTACCGCACGGAT
GGCAGGAGAAGGTGTTCGCTTCCAGTTTCAGAACGAATCGGGGTTTAATG
CAAACAGGCCGCGCATTCTCAAGCTGGGCCACCTGCGAAAAGCTACGGCG
AGGAGCGTCGGGCGGCTGGAGAAAACCACTTGGAAGACCAAGTACGTCGA
ACTCACGGCGGGGAGCTTCGCCTACTCCGACGGTGGGCCTTCTGTGCTTG
GGAAGAGGTATGTGTGCCATATGTAA
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