mRNA_L-elsbetiae_contig17496.4919.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17496.4919.1
Unique NamemRNA_L-elsbetiae_contig17496.4919.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17496.4919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17496contigL-elsbetiae_contig17496:46..383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size340
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.6177292-CDS-L-elsbetiae_contig17496:45..3811622815728.6177292-CDS-L-elsbetiae_contig17496:45..381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17496 46..381 +
1691683064.2915938-CDS-L-elsbetiae_contig17496:45..3811691683064.2915938-CDS-L-elsbetiae_contig17496:45..381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17496 46..381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17496.4919.1prot_L-elsbetiae_contig17496.4919.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17496 46..381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17496.4919.1

>prot_L-elsbetiae_contig17496.4919.1 ID=prot_L-elsbetiae_contig17496.4919.1|Name=mRNA_L-elsbetiae_contig17496.4919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
RLCAEILPALYRAVALFKVHYIGPPTVHTYIHPKRRGYIYNCLGSSAGAS
KDAEPISDLRTAEGVSLSRWLSEQSARYLPVTRQAGQPSMLKQQQQQQRQ
RQQQELHFLFDS
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mRNA from alignment at L-elsbetiae_contig17496:46..383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17496.4919.1 ID=mRNA_L-elsbetiae_contig17496.4919.1|Name=mRNA_L-elsbetiae_contig17496.4919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=338bp|location=Sequence derived from alignment at L-elsbetiae_contig17496:46..383+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCTGTGCGCAGAGATTTTACCTGCACTATATCGGGCGGTTGCACTATT
CAAAGTGCACTATATAGGGCCCCCTACTGTACATACATACATACATCCGA
AAAGGCGTGGGTATATTTACAACTGCTTGGGTTCAAGTGCAGGTGCTTCG
AAGGATGCTGAGCCCATTTCTGATTTACGCACAGCCGAGGGCGTCTCTCT
CTCTCGCTGGCTATCAGAGCAGAGTGCGAGGTACCTACCTGTGACACGAC
AGGCCGGGCAGCCTTCAATGCTGAAGCAGCAGCAGCAACAGCAGCGGCAG
CGGCAGCAGCAAGAGCTTCACTTCTTATTCGATTCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17496:46..383+

>mRNA_L-elsbetiae_contig17496.4919.1 ID=mRNA_L-elsbetiae_contig17496.4919.1|Name=mRNA_L-elsbetiae_contig17496.4919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig17496:46..383+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCTGTGCGCAGAGATTTTACCTGCACTATATCGGGCGGTTGCACTATT
CAAAGTGCACTATATAGGGCCCCCTACTGTACATACATACATACATCCGA
AAAGGCGTGGGTATATTTACAACTGCTTGGGTTCAAGTGCAGGTGCTTCG
AAGGATGCTGAGCCCATTTCTGATTTACGCACAGCCGAGGGCGTCTCTCT
CTCTCGCTGGCTATCAGAGCAGAGTGCGAGGTACCTACCTGTGACACGAC
AGGCCGGGCAGCCTTCAATGCTGAAGCAGCAGCAGCAACAGCAGCGGCAG
CGGCAGCAGCAAGAGCTTCACTTCTTATTCGATTCGCGTCTGTGCGCAGA
GATTTTACCTGCACTATATCGGGCGGTTGCACTATTCAAAGTGCACTATA
TAGGGCCCCCTACTGTACATACATACATACATCCGAAAAGGCGTGGGTAT
ATTTACAACTGCTTGGGTTCAAGTGCAGGTGCTTCGAAGGATGCTGAGCC
CATTTCTGATTTACGCACAGCCGAGGGCGTCTCTCTCTCTCGCTGGCTAT
CAGAGCAGAGTGCGAGGTACCTACCTGTGACACGACAGGCCGGGCAGCCT
TCAATGCTGAAGCAGCAGCAGCAACAGCAGCGGCAGCGGCAGCAGCAAGA
GCTTCACTTCTTATTCGATTCG
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