mRNA_L-elsbetiae_contig17493.4918.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17493.4918.1
Unique NamemRNA_L-elsbetiae_contig17493.4918.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17493.4918.1 vs. uniprot
Match: D7FH11_ECTSI (Urea/Na+ high-affinity symporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH11_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 9.930e-27
Identity = 60/72 (83.33%), Postives = 69/72 (95.83%), Query Frame = 2 
Query:    2 VIVIIWPILSLPAGVFSEGYFNFWVALSILWGLVATLFVVFLPLYESMDAIINVFKGMCGGGAPAGKTVEET 217
            VIVI+WP+LSLPAGVFSEGYF+FWVALSILWGLVAT+FVVFLPLYES DAI++VFKGMCG  APAGKTV+++
Sbjct:  591 VIVILWPVLSLPAGVFSEGYFDFWVALSILWGLVATMFVVFLPLYESKDAIVSVFKGMCGQ-APAGKTVQQS 661
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BLAST of mRNA_L-elsbetiae_contig17493.4918.1 vs. uniprot
Match: A0A7S3Y3H0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3H0_HETAK)

HSP 1 Score: 82.8 bits (203), Expect = 1.140e-14
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 2 
Query:    2 VIVIIWPILSLPAGVFSEGYFNFWVALSILWGLVATLFVVFLPLYESMDAIINVFKGMCGGGAPAG----KTVEETLAA 226
            VIV++WP+ SLPAGVFS+GYF+FWVA+S++WGLVAT+ +V LPL ES+DAI  +  G+ G   P      K +E+ LAA
Sbjct:  242 VIVVLWPVFSLPAGVFSKGYFSFWVAVSVIWGLVATIAIVGLPLLESVDAIKMIVYGLLGWTLPPSGEDMKNLEDRLAA 320
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BLAST of mRNA_L-elsbetiae_contig17493.4918.1 vs. uniprot
Match: A0A7S4DBE8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBE8_HETAK)

HSP 1 Score: 82.8 bits (203), Expect = 2.790e-14
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 2 
Query:    2 VIVIIWPILSLPAGVFSEGYFNFWVALSILWGLVATLFVVFLPLYESMDAIINVFKGMCGGGAPAG----KTVEETLAA 226
            VIV++WP+ SLPAGVFS+GYF+FWVA+S++WGLVAT+ +V LPL ES+DAI  +  G+ G   P      K +E+ LAA
Sbjct:  615 VIVVLWPVFSLPAGVFSKGYFSFWVAVSVIWGLVATIAIVGLPLLESVDAIKMIVYGLLGWTLPPSGEDMKNLEDRLAA 693
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BLAST of mRNA_L-elsbetiae_contig17493.4918.1 vs. uniprot
Match: A0A388JSM0_CHABU (A to I editase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JSM0_CHABU)

HSP 1 Score: 79.0 bits (193), Expect = 6.620e-13
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 2 
Query:    8 VIIWPILSLPAGVFSEGYFNFWVALSILWGLVATLFVVFLPLYESMDAIINVFKGM 175
            +IIWP+LSLPAGVFS+GYF+FWV +S++WG VAT   + LPLYES DAI+ V  G+
Sbjct: 1351 IIIWPLLSLPAGVFSKGYFSFWVIVSLIWGTVATAITILLPLYESWDAIVVVCTGL 1406
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BLAST of mRNA_L-elsbetiae_contig17493.4918.1 vs. uniprot
Match: A0A7S3GUL2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUL2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.440e-13
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 2 
Query:    2 VIVIIWPILSLPAGVFSEGYFNFWVALSILWGLVATLFVVFLPLYESMDAIINVFKGMCG 181
            V+VIIWP+LS+PAGVFS+GY++ WV +SI W  VAT  +++LP+YES D  INVF  + G
Sbjct:  105 VMVIIWPLLSVPAGVFSKGYWSMWVFISIAWSFVATGVIIWLPIYESRDTFINVFNSILG 164
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BLAST of mRNA_L-elsbetiae_contig17493.4918.1 vs. uniprot
Match: A0A061QN01_9CHLO (Urea active transporter-like protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QN01_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 2.820e-12
Identity = 32/61 (52.46%), Postives = 50/61 (81.97%), Query Frame = 2 
Query:    2 VIVIIWPILSLPAGVFSEGYFNFWVALSILWGLVATLFVVFLPLYESMDAIINVFKGMCGG 184
            V+VI+WP+L+LPAGVFSE YF FWVA++I+WG+V+++ ++ LP++ES + +I V K +  G
Sbjct:  125 VLVILWPLLALPAGVFSESYFTFWVAIAIIWGIVSSIVMIVLPVWESREGLIEVMKRVMSG 185
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BLAST of mRNA_L-elsbetiae_contig17493.4918.1 vs. uniprot
Match: A0A7S1XEJ5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XEJ5_9RHOD)

HSP 1 Score: 72.8 bits (177), Expect = 9.900e-12
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 2 
Query:    5 IVIIWPILSLPAGVFSEGYFNFWVALSILWGLVATLFVVFLPLYESMDAIINVFKG 172
            +V++WPIL++PAGVF+EGYF FWVA+SI WG++A L ++ LPL+E+   II V  G
Sbjct:  124 LVVVWPILTIPAGVFNEGYFTFWVAISITWGILACLTMLLLPLWEAKGGIIGVLSG 179
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BLAST of mRNA_L-elsbetiae_contig17493.4918.1 vs. uniprot
Match: H9WIG6_PINTA (Uncharacterized protein (Fragment) n=5 Tax=Pinus subgen. Pinus TaxID=139271 RepID=H9WIG6_PINTA)

HSP 1 Score: 69.7 bits (169), Expect = 1.610e-11
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:    2 VIVIIWPILSLPAGVFSEGYFNFWVALSILWGLVATLFVVFLPLYESMDAIINVFKGM 175
            VIVI+WP+LSLPA VFS GYF FW  +SI WG + +L ++ LPL ES + I  V  GM
Sbjct:   12 VIVILWPVLSLPARVFSSGYFTFWAVISIAWGTIGSLVIIILPLIESRETIQRVLVGM 69
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BLAST of mRNA_L-elsbetiae_contig17493.4918.1 vs. uniprot
Match: A0A2R6XDE2_MARPO (Uncharacterized protein n=5 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XDE2_MARPO)

HSP 1 Score: 74.3 bits (181), Expect = 2.060e-11
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 2 
Query:    2 VIVIIWPILSLPAGVFSEGYFNFWVALSILWGLVATLFVVFLPLYESMDAIINVFKGM 175
            +I+IIWP+LSLPA VFSEGYF FW  + I+WG VA++ ++ LPLYES + I+ V  GM
Sbjct:  600 IILIIWPLLSLPAKVFSEGYFTFWAVVCIVWGTVASVVIIVLPLYESWETIVLVLNGM 657
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BLAST of mRNA_L-elsbetiae_contig17493.4918.1 vs. uniprot
Match: A0A0S3TGB8_NEOYE (Urea active transporter-like protein 2 n=2 Tax=Neopyropia yezoensis TaxID=2788 RepID=A0A0S3TGB8_NEOYE)

HSP 1 Score: 73.9 bits (180), Expect = 2.730e-11
Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 2 
Query:    2 VIVIIWPILSLPAGVFSEGYFNFWVALSILWGLVATLFVVFLPLYESMDAIINVFKGMCGGGAPA--GKTVEETL 220
            V+V+ WP+L+LPAGVFS+GYF FWV LSI+WGL+AT+ +V LP++ES  +I+ +    CG  +P    KT+EE +
Sbjct:  596 VLVVAWPLLALPAGVFSKGYFTFWVILSIIWGLMATIAMVLLPVWESRSSILAILS--CGAISPPLPVKTMEEPV 668
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17493.4918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH11_ECTSI9.930e-2783.33Urea/Na+ high-affinity symporter n=2 Tax=Ectocarpu... [more]
A0A7S3Y3H0_HETAK1.140e-1455.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DBE8_HETAK2.790e-1455.70Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A388JSM0_CHABU6.620e-1364.29A to I editase domain-containing protein n=1 Tax=C... [more]
A0A7S3GUL2_9STRA8.440e-1358.33Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A061QN01_9CHLO2.820e-1252.46Urea active transporter-like protein (Fragment) n=... [more]
A0A7S1XEJ5_9RHOD9.900e-1257.14Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
H9WIG6_PINTA1.610e-1156.90Uncharacterized protein (Fragment) n=5 Tax=Pinus s... [more]
A0A2R6XDE2_MARPO2.060e-1158.62Uncharacterized protein n=5 Tax=Marchantia polymor... [more]
A0A0S3TGB8_NEOYE2.730e-1152.00Urea active transporter-like protein 2 n=2 Tax=Neo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17493contigL-elsbetiae_contig17493:53..1075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size790
Cds size504
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17493.4918.1prot_L-elsbetiae_contig17493.4918.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17493 53..789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.5542932-CDS-L-elsbetiae_contig17493:52..3461622815728.5542932-CDS-L-elsbetiae_contig17493:52..346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17493 53..346 +
1691683064.256796-CDS-L-elsbetiae_contig17493:52..3461691683064.256796-CDS-L-elsbetiae_contig17493:52..346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17493 53..346 +
1622815728.568678-CDS-L-elsbetiae_contig17493:579..7891622815728.568678-CDS-L-elsbetiae_contig17493:579..789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17493 580..789 +
1691683064.2728696-CDS-L-elsbetiae_contig17493:579..7891691683064.2728696-CDS-L-elsbetiae_contig17493:579..789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17493 580..789 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.58211-UTR-L-elsbetiae_contig17493:789..10751622815728.58211-UTR-L-elsbetiae_contig17493:789..1075Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17493 790..1075 +
1691683064.2822917-UTR-L-elsbetiae_contig17493:789..10751691683064.2822917-UTR-L-elsbetiae_contig17493:789..1075Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17493 790..1075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17493.4918.1

>prot_L-elsbetiae_contig17493.4918.1 ID=prot_L-elsbetiae_contig17493.4918.1|Name=mRNA_L-elsbetiae_contig17493.4918.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
GDRDHLAHPVPARRSVLRRLLQLLGGPVHPLGPRGHPLRRVPPPVRVHGR
HYQRVQGHVRRRRPRRQDRGGDPGCPGWRRPRLRRPHRQDRGRDSVRPAR
DHGLKHVPLHALPQEDRRSTAFSISQHKTDELRATVFSRFNRFSLVYSSI
HTAEDHAIGVRLVGTAS*
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mRNA from alignment at L-elsbetiae_contig17493:53..1075+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17493.4918.1 ID=mRNA_L-elsbetiae_contig17493.4918.1|Name=mRNA_L-elsbetiae_contig17493.4918.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1023bp|location=Sequence derived from alignment at L-elsbetiae_contig17493:53..1075+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGATCGTGATCATCTGGCCCATCCTGTCCCTGCCCGCCGGAGTGTTCT
CCGAAGGCTACTTCAACTTCTGGGTGGCCCTGTCCATCCTCTGGGGCCTC
GTGGCCACCCTCTTCGTCGTGTTCCTCCCCCTGTACGAGTCCATGGACGC
CATTATCAACGTGTTCAAGGGCATGTGCGGCGGCGGCGCCCCCGCCGGCA
AGACCGTGGAGGAGACCCTGGCTGCCCCGGGTGGCGGCGCCCCCGCCTCC
GCCGCCCCCACCGGCAAGACCGTGGAAGAGACTCCGTCCGCCCCGTGAGT
ATAAAGTTGCACCACCCCTGCGTCGTTTCAATCCTTGGTGGCCGATCCAG
TTAAGGTCGAGCGGCACAAGCTCGCAACATGTTCGAAGAAAGGAGGGTAA
AAGTTGAGGTGTGCTCAATTTTTCGCCATATGCTCATCCCGGTAGAGGGC
ACTCACATCTCGAGCGAAATTATAGGTTCTCAACGCTTCCCGTTCCCTTG
TTTCTTATCCTGCTGTTCTATTCTCAGGCCCGCGACCATGGCTTGAAGCA
TGTACCACTACATGCGTTACCACAAGAAGACCGACGGAGCACAGCTTTCT
CAATTTCTCAACACAAGACGGACGAGCTTCGGGCTACGGTTTTCTCTCGT
TTTAATAGGTTTTCTTTAGTGTACAGCAGTATCCATACCGCCGAGGACCA
CGCGATAGGTGTCAGACTTGTCGGCACCGCGTCGTAGAGTTCCGTTCAGA
TCTCATGTACGAAGGGCTCGCCGGGCGCATTTCGCCCTTCGCGACGCTGC
TTTCGGCAGAATTTTTGAGGCTGCATTCTGCGTGTAATACTGTGTATGCG
CAGTGCCTCTTTAGGCTCTGCAGTAGACGCGTGGCCTGTTTTTAGATCAC
GCCAATGAGACTAGACATCAACGGATTGTTTCACCTTTTCGATCCCGGCC
CAGCGTCTCGCGCCAGACGTTCATATTTTTCCAGGAAGAGATGCTTGTTA
ATTCCAAGATGGTTCGATAACTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17493:53..1075+

>mRNA_L-elsbetiae_contig17493.4918.1 ID=mRNA_L-elsbetiae_contig17493.4918.1|Name=mRNA_L-elsbetiae_contig17493.4918.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig17493:53..1075+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGATCGTGATCATCTGGCCCATCCTGTCCCTGCCCGCCGGAGTGTTCT
CCGAAGGCTACTTCAACTTCTGGGTGGCCCTGTCCATCCTCTGGGGCCTC
GTGGCCACCCTCTTCGTCGTGTTCCTCCCCCTGTACGAGTCCATGGACGC
CATTATCAACGTGTTCAAGGGCATGTGCGGCGGCGGCGCCCCCGCCGGCA
AGACCGTGGAGGAGACCCTGGCTGCCCCGGGTGGCGGCGCCCCCGCCTCC
GCCGCCCCCACCGGCAAGACCGTGGAAGAGACTCCGTCCGCCCCGGTGAT
CGTGATCATCTGGCCCATCCTGTCCCTGCCCGCCGGAGTGTTCTCCGAAG
GCTACTTCAACTTCTGGGTGGCCCTGTCCATCCTCTGGGGCCTCGTGGCC
ACCCTCTTCGTCGTGTTCCTCCCCCTGTACGAGTCCATGGACGCCATTAT
CAACGTGTTCAAGGGCATGTGCGGCGGCGGCGCCCCCGCCGGCAAGACCG
TGGAGGAGACCCTGGCTGCCCCGGGTGGCGGCGCCCCCGCCTCCGCCGCC
CCCACCGGCAAGACCGTGGAAGAGACTCCGTCCGCCCCGCCCGCGACCAT
GGCTTGAAGCATGTACCACTACATGCGTTACCACAAGAAGACCGACGGAG
CACAGCTTTCTCAATTTCTCAACACAAGACGGACGAGCTTCGGGCTACGG
TTTTCTCTCGTTTTAATAGGTTTTCTTTAGTGTACAGCAGTATCCATACC
GCCGAGGACCACGCGATAGGTGTCAGACTTGTCGGCACCGCGTCGTAGGC
CCGCGACCATGGCTTGAAGCATGTACCACTACATGCGTTACCACAAGAAG
ACCGACGGAGCACAGCTTTCTCAATTTCTCAACACAAGACGGACGAGCTT
CGGGCTACGGTTTTCTCTCGTTTTAATAGGTTTTCTTTAGTGTACAGCAG
TATCCATACCGCCGAGGACCACGCGATAGGTGTCAGACTTGTCGGCACCG
CGTCGTAG
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