mRNA_L-elsbetiae_contig17486.4914.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17486.4914.1
Unique NamemRNA_L-elsbetiae_contig17486.4914.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17486.4914.1 vs. uniprot
Match: A0A6H5KW71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW71_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 7.580e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 3 
Query:  285 MPSKCHHVSCTKRSNYGTAGTKKAEFCFGHKKDGMVNVRDKT 410
            MP+ C H  C K+  YG AGTKK EFC GH+K GMV+V +++
Sbjct:    1 MPA-CGHAGCPKQPKYGVAGTKKREFCSGHRKAGMVDVVNRS 41
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17486.4914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KW71_9PHAE7.580e-554.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17486contigL-elsbetiae_contig17486:568..1166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size315
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.3428679-UTR-L-elsbetiae_contig17486:567..8511622815728.3428679-UTR-L-elsbetiae_contig17486:567..851Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17486 568..851 +
1691683064.149164-UTR-L-elsbetiae_contig17486:567..8511691683064.149164-UTR-L-elsbetiae_contig17486:567..851Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17486 568..851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.3534262-CDS-L-elsbetiae_contig17486:851..11661622815728.3534262-CDS-L-elsbetiae_contig17486:851..1166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17486 852..1166 +
1691683064.1622047-CDS-L-elsbetiae_contig17486:851..11661691683064.1622047-CDS-L-elsbetiae_contig17486:851..1166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17486 852..1166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17486.4914.1prot_L-elsbetiae_contig17486.4914.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17486 852..1166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17486.4914.1

>prot_L-elsbetiae_contig17486.4914.1 ID=prot_L-elsbetiae_contig17486.4914.1|Name=mRNA_L-elsbetiae_contig17486.4914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MPSKCHHVSCTKRSNYGTAGTKKAEFCFGHKKDGMVNVRDKTCTRHGCTK
QPNYGAAGTKTAEFCSEYKKDGMVNVRDKTCARHGCTKQPNYGVAGSKTA
EFCS*
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mRNA from alignment at L-elsbetiae_contig17486:568..1166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17486.4914.1 ID=mRNA_L-elsbetiae_contig17486.4914.1|Name=mRNA_L-elsbetiae_contig17486.4914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=599bp|location=Sequence derived from alignment at L-elsbetiae_contig17486:568..1166+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGACTCCCATGAGCTTCTAACGGTATTCCATATAGTGACGTAATACCG
ATTAAAAAGAAGAGGTCGAGGTGAAACCGCCACTTTGCACAGTCCCGCCC
GCCAAGTTGATTGACCCGTTGGCCCGCTGTGTCGCGCGCTGGCGCCGGGA
GGGACGGGACAGGCTGCGAGTTGCGTGGTGCTCTACAGCCCTGGATACAG
CCAAAACGTTAGAGGGGGTTAGACACAAGACCGACCGATTACTGCTGCCA
CATTGCCCGCATGTAGGGTGTTTCAGCGAAGAGGATGCCGAGCAAGTGTC
ACCATGTTAGCTGTACCAAGCGATCCAACTACGGTACTGCCGGAACCAAA
AAAGCGGAGTTCTGCTTTGGACACAAGAAGGACGGGATGGTGAATGTTAG
GGACAAGACGTGCACCCGCCACGGTTGCACCAAGCAGCCGAACTACGGTG
CTGCCGGCACCAAAACAGCGGAGTTCTGCTCTGAATATAAGAAGGACGGG
ATGGTGAATGTCAGGGACAAGACGTGCGCTCGCCACGGTTGCACCAAGCA
GCCGAACTATGGTGTTGCCGGCAGCAAAACAGCGGAGTTCTGCTCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17486:568..1166+

>mRNA_L-elsbetiae_contig17486.4914.1 ID=mRNA_L-elsbetiae_contig17486.4914.1|Name=mRNA_L-elsbetiae_contig17486.4914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig17486:568..1166+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGAGCAAGTGTCACCATGTTAGCTGTACCAAGCGATCCAACTACGG
TACTGCCGGAACCAAAAAAGCGGAGTTCTGCTTTGGACACAAGAAGGACG
GGATGGTGAATGTTAGGGACAAGACGTGCACCCGCCACGGTTGCACCAAG
CAGCCGAACTACGGTGCTGCCGGCACCAAAACAGCGGAGTTCTGCTCTGA
ATATAAGAAGGACGGGATGGTGAATGTCAGGGACAAGACGTGCGCTCGCC
ACGGTTGCACCAAGCAGCCGAACTATGGTGTTGCCGGCAGCAAAACAGCG
GAGTTCTGCTCTTGAATGCCGAGCAAGTGTCACCATGTTAGCTGTACCAA
GCGATCCAACTACGGTACTGCCGGAACCAAAAAAGCGGAGTTCTGCTTTG
GACACAAGAAGGACGGGATGGTGAATGTTAGGGACAAGACGTGCACCCGC
CACGGTTGCACCAAGCAGCCGAACTACGGTGCTGCCGGCACCAAAACAGC
GGAGTTCTGCTCTGAATATAAGAAGGACGGGATGGTGAATGTCAGGGACA
AGACGTGCGCTCGCCACGGTTGCACCAAGCAGCCGAACTATGGTGTTGCC
GGCAGCAAAACAGCGGAGTTCTGCTCTTGA
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