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Homology
BLAST of mRNA_L-elsbetiae_contig1748.4911.1 vs. uniprot
Match: A0A6H5KIX7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIX7_9PHAE) HSP 1 Score: 315 bits (807), Expect = 2.700e-95 Identity = 204/378 (53.97%), Postives = 227/378 (60.05%), Query Frame = 2
Query: 305 TAMRGVGTKRPRGYVATAEEPPLPWAGRVPKPAMDADSFVDYGSGFLRKSCDSCVSSKRRCDGHDPCTRCLRRKKPCHYTERKKCGPRSGQKTTNKMRRLYTAET--------------------QLRXXXXXXTQPQHQRPNG-AHLHRTGVTGLAPVLGSSPP-AHRTPTLSAGDLSGDTTCVDHTDYSDNGLPSHRVLLRDESGSSWWSLEDQGAGAGGGLPTRLNGDGG----SWPQHEHHQLHRQGNSKVDDRGDGATGVGSAHFGFNELGHGGLWSGLHSSSTTGXXXXXXXXAGESWEEDDESEEGLGQAEEEVAALLVGLGKA-NEDFEGFSDDENDES--------GGSVSKPPTRQLSISTASQEWSV 1333
T +R VG KRPRGYVA AE+P LPWAGRVPKPAMDADSFVDYGSGFLRKSCDSCVSSKRRCDG DPCTRCLRRKKPCHYTERKKCGPRSGQKT N RR + + + Q QH G A + + P + S P A L+ G+LSG+TTCVD TD SDNGLP HRVL RDESGSSWWSL+DQG GAG + RL+G SWPQ E G ++G GLW GL S XXXXXXXX ESW DD+SEEG GQ EEEVAALL+GLGK NEDFEGFSDD+ + G + + P R L +S ASQE SV
Sbjct: 2 TTVRAVGAKRPRGYVAAAEKPTLPWAGRVPKPAMDADSFVDYGSGFLRKSCDSCVSSKRRCDGQDPCTRCLRRKKPCHYTERKKCGPRSGQKTGNGTRRQPAGTSPPDCAGSSGADARKQRRQFMEYQQRALRTQQQQHAAVGGLARAPASSASSRYPAVAHSRPLAPHASVLTTGELSGETTCVDQTDCSDNGLPPHRVLSRDESGSSWWSLDDQG-GAGAAVSARLSGVPALIPSSWPQREXXXXXXXXXXXXXXXXXXXV-AGVKNYGQRT----GLWGGLRSXXXXXXXXXXXXXXXESW--DDDSEEGQGQNEEEVAALLLGLGKTTNEDFEGFSDDDEQPAPERPVRPGGVGMFREPPRHLPVSNASQELSV 371
BLAST of mRNA_L-elsbetiae_contig1748.4911.1 vs. uniprot
Match: A0A6H5K1B7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B7_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 5.050e-5 Identity = 41/131 (31.30%), Postives = 65/131 (49.62%), Query Frame = 2
Query: 437 GFLRKSCDSCVSSKRRCDGHDPCTRCLRRKKPCHYTERKKCGPRSGQKTTNKMRRLYTAETQLRXXXXXXTQPQHQRPNGAHLHRTGVTGLAPVLGSSPPAHRTPTLSAGDLSG-DTTCVDHTDYSDNGLP 826
G LRKSCD+C SSK +C G PC RC +R+ C +++R++CGP++ + + R A+ Q P+H+ H GV PP+ P + G ++G D++ + T +GLP
Sbjct: 21 GPLRKSCDTCTSSKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKARAEDEKRPRTGMDAQQQA--GLAIKDSPEHKP--AMHQQHAGVP--------HPPSPSLPPI--GTIAGLDSSSNNMTGGGGDGLP 137
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 2930 |
Cds size | 1038 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815728.148052-UTR-L-elsbetiae_contig1748:19479..19777 | 1622815728.148052-UTR-L-elsbetiae_contig1748:19479..19777 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1748 19480..19777 + |
1691683064.014696-UTR-L-elsbetiae_contig1748:19479..19777 | 1691683064.014696-UTR-L-elsbetiae_contig1748:19479..19777 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1748 19480..19777 + |
1622815728.2095234-UTR-L-elsbetiae_contig1748:22110..23704 | 1622815728.2095234-UTR-L-elsbetiae_contig1748:22110..23704 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1748 22111..23704 + |
1691683064.0708766-UTR-L-elsbetiae_contig1748:22110..23704 | 1691683064.0708766-UTR-L-elsbetiae_contig1748:22110..23704 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1748 22111..23704 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815728.1616325-CDS-L-elsbetiae_contig1748:19777..19941 | 1622815728.1616325-CDS-L-elsbetiae_contig1748:19777..19941 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1748 19778..19941 + |
1691683064.0324354-CDS-L-elsbetiae_contig1748:19777..19941 | 1691683064.0324354-CDS-L-elsbetiae_contig1748:19777..19941 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1748 19778..19941 + |
1622815728.1776974-CDS-L-elsbetiae_contig1748:20550..20622 | 1622815728.1776974-CDS-L-elsbetiae_contig1748:20550..20622 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1748 20551..20622 + |
1691683064.0433402-CDS-L-elsbetiae_contig1748:20550..20622 | 1691683064.0433402-CDS-L-elsbetiae_contig1748:20550..20622 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1748 20551..20622 + |
1622815728.1913712-CDS-L-elsbetiae_contig1748:21308..22110 | 1622815728.1913712-CDS-L-elsbetiae_contig1748:21308..22110 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1748 21309..22110 + |
1691683064.055885-CDS-L-elsbetiae_contig1748:21308..22110 | 1691683064.055885-CDS-L-elsbetiae_contig1748:21308..22110 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1748 21309..22110 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1748.4911.1 >prot_L-elsbetiae_contig1748.4911.1 ID=prot_L-elsbetiae_contig1748.4911.1|Name=mRNA_L-elsbetiae_contig1748.4911.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=346bp
MATAMRGVGTKRPRGYVATAEEPPLPWAGRVPKPAMDADSFVDYGSGFLR KSCDSCVSSKRRCDGHDPCTRCLRRKKPCHYTERKKCGPRSGQKTTNKMR RLYTAETQLRRRFTTETQPQHQRPNGAHLHRTGVTGLAPVLGSSPPAHRT PTLSAGDLSGDTTCVDHTDYSDNGLPSHRVLLRDESGSSWWSLEDQGAGA GGGLPTRLNGDGGSWPQHEHHQLHRQGNSKVDDRGDGATGVGSAHFGFNE LGHGGLWSGLHSSSTTGTGSGSGGSAGESWEEDDESEEGLGQAEEEVAAL LVGLGKANEDFEGFSDDENDESGGSVSKPPTRQLSISTASQEWSV* back to topmRNA from alignment at L-elsbetiae_contig1748:19480..23704+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1748.4911.1 ID=mRNA_L-elsbetiae_contig1748.4911.1|Name=mRNA_L-elsbetiae_contig1748.4911.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4225bp|location=Sequence derived from alignment at L-elsbetiae_contig1748:19480..23704+ (Laminarionema elsbetiae ELsaHSoW15) GAAAAATCTCATATGCGGGGTTTCCTCTAGAAAGAGTCACAAAACGCAAC
ACGAGGTCGGCACAGCTGTTCTGCTGTTTTCACACAAGGCCACTCTACCG
TGCACTCTACCCACATCCTTCGCCTGGCACAAAATCTGTCGCAAAGGGTA
CCCCACACCAAGGAAAGGACCCGATACGAATAAATATCGTATCGAGCTGG
ATCCTAATTTCCCTTTGGAATCTCTTTTCCGCTTTTTGCCGCTCTCTTTT
GGACGCACACCGACGGCACACACACACTGCTTCAACTTCCTTCTGCTTAT
GGCGACTGCTATGCGAGGTGTGGGAACCAAGCGACCGCGTGGTTACGTCG
CCACTGCTGAAGAGCCCCCCTTGCCATGGGCAGGACGAGTACCGAAGCCA
GCCATGGACGCGGATAGTTTTGTTGACTACGGCAGCGGCTTTTTGAGGAA
GTCGTGTGACAGGTGAGGCGGAGAGAGACGTTGTGGTGGCGTACCAACAG
CGCGCGTGACAAAGGCGGTACTGCTGATACGACAGGCGGTCTGAAGGCTT
TGTTGGCTTTCGGTCTGCATTTGCCTTCGTCCAAATGAATAAAGTGTCTT
TGTAGAATTACCTTGGCAGCAGACGTGGCGGAGTTTTTGCAGCCAGCCGG
AAATTGCGTGTTCAAGTTTGTGTGTGCCTCGAGGGTACAAAACGTGTGTG
GTGGTTATTATCGTGTAGGCGCTGCAGGTTATGTGTTGATTACTGATAGC
CTGTTGAAGATTTGAATCGGGTTGTGAATCGCTAAACACTGTTGAGTCGT
TACAAATACGTACTACTCACAGTAGAAGGATTAAAATTGACTCAAAATTT
AAATTAGCTAGGTACAAAAATCGCACACGCACAGCCGTTTAGCGCGCTGT
CAATCTGTTGTACAACGATGGCACATCACGGCAACCGTACCCAGCCATCG
TTCCCCATCCCCACGGTGTTTCATTCAGTCGGCACGTTCCTTTCCACCGC
CTCTTATCTTAGTCAGCCGTCCGCCTGATTCTCGTCTTTCTTCAACCCAA
ACCGCCTGCGCGCGTGTGCAGCTGTGTCAGCAGCAAGCGGCGATGCGATG
GCCATGACCCCTGCACGCGCTGCTTGCGACGAAAGAAACCATGGTGAGTC
GGTGGAAGAGCGTGGCGATCACTGTGGAAGCGATAGACTCCACCACACCC
AGGAGAAGTGCAGAAAAACAGCGCCACTTAGTTCGTGCGTGGCGCTCAAT
TTTTCCTCCCTCCTATTTTTTATTTTCATGTTGGGAATGTGAGGCTCACA
ACCCTCCGCACTTTCGCGCGCTCTTCTCGGCCGTCTAGCGCTCTGGATCG
CGGGGGTAACTATGTGTTGTACCAAATGCAGTGTCCGCCAATCGTAGGGA
ATACGAGCTGGCAGACGTCGCTGGGTGTAACCTCGCCGATTTTGACCTCA
CCCCGTGTGTTTTTCGCGCACGTGAAGGACTACAACACATGTACTGCTGT
TTGGCGTCCCAGTTTTTCCGCTACACAGCAGTTGAAGTAGATATGCAAAT
GTGTCCGCACATTTCCTGAGTTGTGTACCAGTGTACGCTTGTTGCTTGCC
CCTCACTTGGTATGTCAAGATTTGTAAGCACAGAGCTCTACGAGTTGTAT
GTGGCTTTTCTCGAAAAGATTGCCGCACCTCTCTACTTTGCTTGCTACTT
CCTCAGTGCGTTCGTGTTGTCCCCATCTCACCCCGTCTCGATCAAAAACA
ATGTGTTCCATTTTTGATTTAACATGCATACTCGTCTGTTTTTCACGTTT
TTCTATCAAAATGTGTTTGCCCGCCCCAGCCACTACACCGAGAGGAAGAA
ATGCGGCCCGCGCAGTGGACAGAAGACTACCAACAAGATGCGCCGCCTCT
ATACAGCTGAGACACAACTACGACGCCGCTTCACCACCGAGACACAGCCG
CAGCACCAACGCCCGAATGGAGCCCATCTCCATCGTACTGGCGTGACCGG
TTTGGCCCCGGTCCTCGGCTCCAGCCCCCCCGCTCATCGGACGCCGACCC
TTTCAGCTGGCGACCTGAGCGGGGACACGACGTGCGTGGACCACACCGAC
TACTCTGACAATGGACTGCCCTCTCATCGAGTGCTGCTGCGAGACGAGTC
AGGGAGCAGTTGGTGGTCACTCGAAGACCAAGGCGCCGGGGCGGGGGGGG
GCTTGCCCACGCGCTTGAACGGCGACGGTGGGTCGTGGCCTCAGCACGAG
CACCACCAGCTCCACCGCCAAGGCAACAGCAAGGTGGACGATCGCGGTGA
TGGCGCTACAGGTGTTGGCAGTGCGCACTTTGGCTTTAACGAGCTGGGGC
ATGGAGGACTGTGGAGCGGGCTGCACAGCAGCAGCACCACTGGCACTGGG
TCCGGTAGCGGAGGCAGTGCCGGCGAATCGTGGGAGGAGGACGACGAGTC
TGAAGAGGGACTGGGGCAGGCTGAAGAAGAGGTGGCGGCCCTCCTGGTCG
GCCTAGGAAAGGCCAACGAGGACTTCGAGGGTTTTTCGGACGATGAAAAC
GACGAGAGTGGAGGCAGCGTTTCCAAGCCCCCTACACGTCAGTTGTCGAT
CTCGACCGCCTCGCAAGAATGGAGTGTTTGACAGCCAAGTTTTATTTAGC
CCCTTTAGCTTCGTCAGTGCTAGGCTGCTTCAAGGAGCGCAATATTTTAG
TTGCCGGGTGTGCTGCATATTCCGGCTCTACGTGTTGGAAGCAACAGTGA
GTAGAACCGCTACGTTTTACAGTTCGCAGGAGTATATACCATACACTGCA
ATATTAGCTGGTATACATATCAGTTTTCAGTTTTCTATATACACCCCCTG
TTGCGCACAATGGAACACGTTGTTCTGGACGATTTTTGTGCTGCGTTTGT
ATTTTATTTCTGCGCCTCGGGCGAAGAGCTCTTTCGAAACGTTCCTCGCC
AGATTTGTTGTCCACAACAAAAATACTTCCGGTGGTGGTATGTTGTCGCT
GGAGTGTCACCGCAGTAGCATAAGGATTACAGCAGGGTCACTTTAAGCGC
ACATATGAAAAGCCTCTTCAGGTAGGTGGGCCTTATGTTCTAGTTGCGCG
CCACACCTCCGTATTGATATTATTTACGCAGTCTCGTGTGTGCGGACATG
GTAAAATAGCAGCCATGATCGTGTTGATTGCGTCGAACGGTGTTTTTTAG
CTGCGTCCATCCGTCATCACAGGAATGCCTGTGTCTCGGTTGGATGCGTT
TCCCATACTGTATTCTAGGGTCGTATATTAGCTTAAGTTGTGTGACTCCG
CCATATCCTGCGTCTTTCAGGCAGGGTTCTATGACGGCGAACTGGCTGGC
TAGAAATTCTAGACGAAAGGCAGATGGGCCACCCCGAGGCATCGACGAAG
GAGAGCGATGTCGTATCTCACTCAGCTTTTGCATGCAGCAGACTGGTGTT
TTGTGTCGCAATAAGTGTTGCAGGGTAATTATGCCGATCCCTCATGTATT
TTGTATGGTGCCGATTTTGTGTACATGGTATTGACATTTGTATGAGACCT
TTGTTGCGTCACCCTCTCTTGCGTGTGGTCGCTAGCAATGGCATCACCTT
TTCCCTAAAAATTATAAGATCATCAACGTGTCATGAAAAAAGCGTTAAGA
TTTATTTGATCTCAGGGGAGGCTATTCTGGATACCTTACTGGCAAACCCA
TCGGTTCGTGAAACATACCGTACAAAAGCTTGTCAAAGTATGGCGCACCA
TAATTTTGGAATCATGTTGCGGGTCCATTTTATTTTTTCGTTTTTCAGTA
CACCCTTTTCAGCAGGGTGGTATGTGGTGTTGTGATGGGGTGGTATTGGG
ATGGGAATTACCATCAAGTCACCACCACGCCATTCGGAGGCATCATCAGT
AAAGGTGTGCTGGATTTTTAACGCTTCCCATCCCATCAAATTTACCACCA
CAGCTACTGAAGTTACCACCATCCCATTGACAACAGGTAGAGAGAGAGAA
GAGGTGCCCGCAGTTTTCTGATTGGCCAATTTTTTTAAAGGAACTTTGGT
TCGATCACCTGTTTGAAAGGATGATCATATTTTCACCTGGCCAGAAGTAA
GTCTGGAAATCACTTGAAAGAAGAGGATTTGAGAAAGAAAAAAGATGCCC
GCAGTTTTCTGATTCGCAAAAAAAAATTTAGGAGCTTTGGTTCGATCACT
GGCCAGAAACCACTTGAAAGGAGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1748:19480..23704+ >mRNA_L-elsbetiae_contig1748.4911.1 ID=mRNA_L-elsbetiae_contig1748.4911.1|Name=mRNA_L-elsbetiae_contig1748.4911.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2076bp|location=Sequence derived from alignment at L-elsbetiae_contig1748:19480..23704+ (Laminarionema elsbetiae ELsaHSoW15) ATGGCGACTGCTATGCGAGGTGTGGGAACCAAGCGACCGCGTGGTTACGT CGCCACTGCTGAAGAGCCCCCCTTGCCATGGGCAGGACGAGTACCGAAGC CAGCCATGGACGCGGATAGTTTTGTTGACTACGGCAGCGGCTTTTTGAGG AAGTCGTGTGACAGATGGCGACTGCTATGCGAGGTGTGGGAACCAAGCGA CCGCGTGGTTACGTCGCCACTGCTGAAGAGCCCCCCTTGCCATGGGCAGG ACGAGTACCGAAGCCAGCCATGGACGCGGATAGTTTTGTTGACTACGGCA GCGGCTTTTTGAGGAAGTCGTGTGACAGCTGTGTCAGCAGCAAGCGGCGA TGCGATGGCCATGACCCCTGCACGCGCTGCTTGCGACGAAAGAAACCATG CTGTGTCAGCAGCAAGCGGCGATGCGATGGCCATGACCCCTGCACGCGCT GCTTGCGACGAAAGAAACCATGCCACTACACCGAGAGGAAGAAATGCGGC CCGCGCAGTGGACAGAAGACTACCAACAAGATGCGCCGCCTCTATACAGC TGAGACACAACTACGACGCCGCTTCACCACCGAGACACAGCCGCAGCACC AACGCCCGAATGGAGCCCATCTCCATCGTACTGGCGTGACCGGTTTGGCC CCGGTCCTCGGCTCCAGCCCCCCCGCTCATCGGACGCCGACCCTTTCAGC TGGCGACCTGAGCGGGGACACGACGTGCGTGGACCACACCGACTACTCTG ACAATGGACTGCCCTCTCATCGAGTGCTGCTGCGAGACGAGTCAGGGAGC AGTTGGTGGTCACTCGAAGACCAAGGCGCCGGGGCGGGGGGGGGCTTGCC CACGCGCTTGAACGGCGACGGTGGGTCGTGGCCTCAGCACGAGCACCACC AGCTCCACCGCCAAGGCAACAGCAAGGTGGACGATCGCGGTGATGGCGCT ACAGGTGTTGGCAGTGCGCACTTTGGCTTTAACGAGCTGGGGCATGGAGG ACTGTGGAGCGGGCTGCACAGCAGCAGCACCACTGGCACTGGGTCCGGTA GCGGAGGCAGTGCCGGCGAATCGTGGGAGGAGGACGACGAGTCTGAAGAG GGACTGGGGCAGGCTGAAGAAGAGGTGGCGGCCCTCCTGGTCGGCCTAGG AAAGGCCAACGAGGACTTCGAGGGTTTTTCGGACGATGAAAACGACGAGA GTGGAGGCAGCGTTTCCAAGCCCCCTACACGTCAGTTGTCGATCTCGACC GCCTCGCAAGAATGGAGTGTTTGACCACTACACCGAGAGGAAGAAATGCG GCCCGCGCAGTGGACAGAAGACTACCAACAAGATGCGCCGCCTCTATACA GCTGAGACACAACTACGACGCCGCTTCACCACCGAGACACAGCCGCAGCA CCAACGCCCGAATGGAGCCCATCTCCATCGTACTGGCGTGACCGGTTTGG CCCCGGTCCTCGGCTCCAGCCCCCCCGCTCATCGGACGCCGACCCTTTCA GCTGGCGACCTGAGCGGGGACACGACGTGCGTGGACCACACCGACTACTC TGACAATGGACTGCCCTCTCATCGAGTGCTGCTGCGAGACGAGTCAGGGA GCAGTTGGTGGTCACTCGAAGACCAAGGCGCCGGGGCGGGGGGGGGCTTG CCCACGCGCTTGAACGGCGACGGTGGGTCGTGGCCTCAGCACGAGCACCA CCAGCTCCACCGCCAAGGCAACAGCAAGGTGGACGATCGCGGTGATGGCG CTACAGGTGTTGGCAGTGCGCACTTTGGCTTTAACGAGCTGGGGCATGGA GGACTGTGGAGCGGGCTGCACAGCAGCAGCACCACTGGCACTGGGTCCGG TAGCGGAGGCAGTGCCGGCGAATCGTGGGAGGAGGACGACGAGTCTGAAG AGGGACTGGGGCAGGCTGAAGAAGAGGTGGCGGCCCTCCTGGTCGGCCTA GGAAAGGCCAACGAGGACTTCGAGGGTTTTTCGGACGATGAAAACGACGA GAGTGGAGGCAGCGTTTCCAAGCCCCCTACACGTCAGTTGTCGATCTCGA CCGCCTCGCAAGAATGGAGTGTTTGA back to top
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