mRNA_L-elsbetiae_contig1744.4897.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1744.4897.1
Unique NamemRNA_L-elsbetiae_contig1744.4897.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1744.4897.1 vs. uniprot
Match: D7G8A8_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A8_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.170e-45
Identity = 152/239 (63.60%), Postives = 165/239 (69.04%), Query Frame = 2 
Query:    2 GDTPLMVAVESEQTAAVRMLIKEGGADVNGASETTGXXXXXXXXXXXXXXXXXXXXXXXXXELECRNKKGETALSLACFWGNEDSVEYLLGAGADPNSRSESGERPGDSFDAVFVPAVEENFFTADEXXXXXXXXXXXXXXXXXXXXXXXXDIMFDDXXXXXXXXXXXXXXDDDK----------------DVVSKEGNE--GEGGGDXXPEGEEEVPGPREAILDMLEKARAEAAVKA 664
            GDTPLM+AVESE T AVRMLIKEGGA+ N AS+TT XXXXXXXXXXXXXXXXXXXXXXXXXELE RN KG+TALSLACFWGNED+VEYLL AGADPNSR+++GERPGDSFD+VFVP V ENFFTADE                        DIMFDD   XXXXXXXXXXX                    +   KE     GE GGD  PE  EEV GPRE IL MLE+ARAEA ++A
Sbjct:  138 GDTPLMLAVESELTPAVRMLIKEGGANANLASKTTXXXXXXXXXXXXXXXXXXXXXXXXXXELELRNNKGDTALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGDSFDSVFVPQVVENFFTADEDNERASAAGQE-------------DIMFDDDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPAGKEDASLAGEEGGDGEPE--EEVLGPRENILQMLEEARAEATLEA 361
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BLAST of mRNA_L-elsbetiae_contig1744.4897.1 vs. uniprot
Match: A0A835ZGL3_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGL3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.190e-15
Identity = 66/120 (55.00%), Postives = 86/120 (71.67%), Query Frame = 2 
Query:    2 GDTPLMVAVESEQTAAVRMLIKEGGADVNGASETTGXXXXXXXXXXXXXXXXXXXXXXXXXELECRNKKGETALSLACFWGNEDSVEYLLGAGADPNSRSESGERPGDSFDAVFVPAVEE 361
            GD+PLM+A E++ T  +++L+ EGGAD+NG +      XXXXXXXXXXXXXXXXXXXXXXX       +G+TAL++AC WGN D+ +YLL  GADPN  +  G+R GD F+ VFV   +E
Sbjct:  105 GDSPLMLAAENDFTDIIKLLVHEGGADINGKAGAGMETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDTALNVACHWGNVDTAQYLLDRGADPNCANHDGKRAGDEFETVFVDGRDE 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1744.4897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8A8_ECTSI1.170e-4563.60Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A8... [more]
A0A835ZGL3_9STRA1.190e-1555.00Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1744contigL-elsbetiae_contig1744:1796..4612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue9.7e-38
Seed eggNOG ortholog2880.D7G8A8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-19_003780.1
Exons4
Model size1545
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1744.4897.1prot_L-elsbetiae_contig1744.4897.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1744 1812..3737 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.6294599-UTR-L-elsbetiae_contig1744:1795..18111622815726.6294599-UTR-L-elsbetiae_contig1744:1795..1811Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1744 1796..1811 +
1691683062.9440298-UTR-L-elsbetiae_contig1744:1795..18111691683062.9440298-UTR-L-elsbetiae_contig1744:1795..1811Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1744 1796..1811 +
1622815726.6899748-UTR-L-elsbetiae_contig1744:3737..46121622815726.6899748-UTR-L-elsbetiae_contig1744:3737..4612Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1744 3738..4612 +
1691683062.996448-UTR-L-elsbetiae_contig1744:3737..46121691683062.996448-UTR-L-elsbetiae_contig1744:3737..4612Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1744 3738..4612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.6397455-CDS-L-elsbetiae_contig1744:1811..19061622815726.6397455-CDS-L-elsbetiae_contig1744:1811..1906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1744 1812..1906 +
1691683062.9556754-CDS-L-elsbetiae_contig1744:1811..19061691683062.9556754-CDS-L-elsbetiae_contig1744:1811..1906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1744 1812..1906 +
1622815726.6515899-CDS-L-elsbetiae_contig1744:2420..24581622815726.6515899-CDS-L-elsbetiae_contig1744:2420..2458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1744 2421..2458 +
1691683062.9657319-CDS-L-elsbetiae_contig1744:2420..24581691683062.9657319-CDS-L-elsbetiae_contig1744:2420..2458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1744 2421..2458 +
1622815726.6637213-CDS-L-elsbetiae_contig1744:2771..28831622815726.6637213-CDS-L-elsbetiae_contig1744:2771..2883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1744 2772..2883 +
1691683062.9761107-CDS-L-elsbetiae_contig1744:2771..28831691683062.9761107-CDS-L-elsbetiae_contig1744:2771..2883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1744 2772..2883 +
1622815726.6780982-CDS-L-elsbetiae_contig1744:3328..37371622815726.6780982-CDS-L-elsbetiae_contig1744:3328..3737Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1744 3329..3737 +
1691683062.9867544-CDS-L-elsbetiae_contig1744:3328..37371691683062.9867544-CDS-L-elsbetiae_contig1744:3328..3737Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1744 3329..3737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1744.4897.1

>prot_L-elsbetiae_contig1744.4897.1 ID=prot_L-elsbetiae_contig1744.4897.1|Name=mRNA_L-elsbetiae_contig1744.4897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
MVAVESEQTAAVRMLIKEGGADVNGASETTGETPLMLAAYYGHTHLARVL
VDDGGAELECRNKKGETALSLACFWGNEDSVEYLLGAGADPNSRSESGER
PGDSFDAVFVPAVEENFFTADEEAERRESAASAGQEEEEEGEEEEEDIMF
DDEEEKDIMFDEEEVKDDDKDVVSKEGNEGEGGGDGEPEGEEEVPGPREA
ILDMLEKARAEAAVKAA*
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mRNA from alignment at L-elsbetiae_contig1744:1796..4612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1744.4897.1 ID=mRNA_L-elsbetiae_contig1744.4897.1|Name=mRNA_L-elsbetiae_contig1744.4897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2817bp|location=Sequence derived from alignment at L-elsbetiae_contig1744:1796..4612+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCGACACGCCGCTGATGGTCGCGGTGGAGAGCGAGCAGACGGCGGCGG
TGAGGATGCTCATCAAGGAAGGAGGGGCGGACGTCAACGGCGCCTCGGAG
ACCACTGGAGAGTGAGTAAAGGCGTGCTCTCACCGTAAACGTCCAAACGC
TCTGGACTATGCTTGTACTCTCTCTCCCCGAAAGTGGGCGCGTTCCGACA
TTGCTGCCGTGTGGTGCCAGGAGTGTTGGCGCGGCTGGTTGCAGGTGCTT
GCGTCTGTTTTTCGTGTTATGCTTTTGCGTCAATCGCGCGCCTCAGGGGC
AGTTGGTGTTCGAACCAAAGTCAGGCGGAAGGGATATTCTCTTAAAAAAA
CTGACCTACGTTGCCACCAGAGATAGCGATGCTTCTGCAGAAGAATTAAA
TACGTCTAGAATACTTACTCGAATAGAGCACGGATTTTCCTCAGAAAAAT
CGTCTGCATGAAAAGCCGCCCTATTTTTGGTGTGCGAACGGTGGGATCTT
TGCGCTTCCGTGTTGCTGGTTGTTGCTTGAAGGCGCTTCGGCATTTATTT
GTTTTGCTTTGCGTCTGCATTTCGCATCTGATCAGTGGCGTGCCCCTGTC
TCCTGCGTGCTTGCCTCTTGACCAGGACTCCTCTAATGCTCGCGGCATAC
TACGGACACACACGTGAGCGCTGTTTCGGAGAACGTTGGGAATAGGGAGA
GAGAGTTCCACAACGCTTCTTTGAGTTTTCGCGGCTGATTTAGGTTTCAG
GTTCTTCCGTTTATCCAGATCGTCCCTTACAATAGCTCTTTGCATCCAGG
CGCTGTTTTCTGGGTTTACTTCCCGCTCACGTCCCCACCAACCCCTCTGT
TGCTGTGTGACCGGCCTTCGACGTTGGCAATTTTTCGATTTGTCGCACGC
CTCTCCCCCCCCTCCGTCCATTATTTCCGGGAAAACCAACCACAACCAAT
TTCCGTGCGTGCCACGAGGACCGCAGACCTTGCGCGAGTGCTCGTTGACG
ACGGCGGTGCGGAGCTGGAGTGTCGTAACAAGAAGGGGGAGACGGCGCTG
AGCCTGGCGTGCTTCTGGGGGAACGAGGACTCGGTCGAGTGAGCGAAGCA
GACTCATCTGCCTCGTCGTGTCCAGCCATACCTTGAGAATCGACGCAATG
TAGACCTGGTCAGAGAGAAGCGCCTTCTCGATGTTTTTCAGGAGTGTTTC
AGCCGGTCGGCAGGGGAAAGAGAGGGGGAAGGGGGGCGATGACTACATAG
CGCGCAGTGGTGCCGTGAAGGAGCGGTGTAACAAATGGGCGGCTCCCGAG
CGCATTGCGGGGGGTGCGAACTGCGTGTGCGTCCCCCCCTGTCGGCGTTT
TTTTGTGTTTGAGGAGCGACAGGAACCGAGCCTTGTCGTCTTTGCTGATT
GGGCCGCGGTCCAGGATCAACAAGTAGGGTCTTCAATGCTCATCTTTCTT
TCGAGTGCAGGCGTTGTTTCTCCCCCCCCTTGCACCCCGCTCACCCGTGT
CTGCGTGGTACTATCTTGTTTGGACCGCCGCAGGTACCTTCTTGGGGCCG
GGGCGGATCCGAACAGCCGCAGCGAGTCGGGCGAGCGTCCGGGAGACAGC
TTCGACGCCGTCTTTGTCCCCGCGGTGGAGGAGAACTTCTTTACCGCCGA
CGAAGAGGCCGAACGTCGCGAGAGCGCCGCAAGCGCAGGTCAGGAGGAGG
AGGAGGAAGGGGAAGAGGAAGAGGAGGACATAATGTTTGATGACGAGGAG
GAGAAGGACATAATGTTTGATGAAGAGGAGGTCAAAGACGACGACAAGGA
CGTGGTGTCGAAAGAAGGGAACGAGGGCGAAGGAGGAGGAGACGGTGAGC
CTGAAGGAGAAGAAGAGGTTCCAGGTCCGAGGGAGGCCATCCTGGACATG
CTTGAAAAGGCACGGGCGGAGGCGGCCGTCAAAGCGGCCTAGATTTGGCG
CCGCCCGCAAACTGTGACTCTGGACTCTGGGCGAAGAGCCACACCGTGTA
ACCCGGTCTCTTACATAAAACGAAAGTAATTTTAGCAGAAAATGCAGGTA
GATGTATGCATTGGCAGAGAGGCTCGGAATGACAGAAAATTGAAAAAACC
AATTGACCTTTGATTGTCCCAGTGTTGATTCGGTGGAGATACGGGCGCGC
CAGGAACACTCTACACCTACGTGTTTTGGACCGCTCGTGTCTGGAGCGGT
TTAATGAATATCGCTCGTGGTTAAGAATCGTGTATTTTTGATGGGATTAT
TTTTGTAGCGTTTCTTTGCGTCCGGGGGCGCAGGGGAGACCGGGTGTGGA
CCGTCCACCAATCGATACATTTCATCAACATGTCTGAGACAAGAAAGACG
GAAAAAAAGCTAAAGCCAAAGTTGGACGACGAGAGGGAACCGGATGTTTT
GATAGAGGAGGGACCAAGCGCGCAACAAGAGGGCTCTTGAACTTCGAGTA
CTGTTTATGGCGGGAGCAGCGACGGGAGCATTTACCCTTTGAGCAGCCCC
TCGTAATTGCATGCAAATTGATCAGGGGTCTCCTCGAGAATATTCCCGCG
GTAATTTGACGGGAGATTGAACTAGTGACGTATACCGTGATATCTTGCAG
TCACCCATCCCACCCATCCCGTTTACAAACAAATTATTTGTCCTCCTTCC
TTTGCTTACCTTGATGCGTTTTTCCATTCCTATCCATCCCATTACCGCGT
AACGGGTCGAATCTCGGTTATTTTTCGATCACGTCCATCCCAGTACCGCG
CACTCGTCAGTTACCATTTTCGTACTTCGGGCGGCAGATCGCTGGTTTGA
TTCGCGCGACAACGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1744:1796..4612+

>mRNA_L-elsbetiae_contig1744.4897.1 ID=mRNA_L-elsbetiae_contig1744.4897.1|Name=mRNA_L-elsbetiae_contig1744.4897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig1744:1796..4612+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGCGGTGGAGAGCGAGCAGACGGCGGCGGTGAGGATGCTCATCAA
GGAAGGAGGGGCGGACGTCAACGGCGCCTCGGAGACCACTGGAGAATGGT
CGCGGTGGAGAGCGAGCAGACGGCGGCGGTGAGGATGCTCATCAAGGAAG
GAGGGGCGGACGTCAACGGCGCCTCGGAGACCACTGGAGAGACTCCTCTA
ATGCTCGCGGCATACTACGGACACACACGACTCCTCTAATGCTCGCGGCA
TACTACGGACACACACACCTTGCGCGAGTGCTCGTTGACGACGGCGGTGC
GGAGCTGGAGTGTCGTAACAAGAAGGGGGAGACGGCGCTGAGCCTGGCGT
GCTTCTGGGGGAACGAGGACTCGGTCGAACCTTGCGCGAGTGCTCGTTGA
CGACGGCGGTGCGGAGCTGGAGTGTCGTAACAAGAAGGGGGAGACGGCGC
TGAGCCTGGCGTGCTTCTGGGGGAACGAGGACTCGGTCGAGTACCTTCTT
GGGGCCGGGGCGGATCCGAACAGCCGCAGCGAGTCGGGCGAGCGTCCGGG
AGACAGCTTCGACGCCGTCTTTGTCCCCGCGGTGGAGGAGAACTTCTTTA
CCGCCGACGAAGAGGCCGAACGTCGCGAGAGCGCCGCAAGCGCAGGTCAG
GAGGAGGAGGAGGAAGGGGAAGAGGAAGAGGAGGACATAATGTTTGATGA
CGAGGAGGAGAAGGACATAATGTTTGATGAAGAGGAGGTCAAAGACGACG
ACAAGGACGTGGTGTCGAAAGAAGGGAACGAGGGCGAAGGAGGAGGAGAC
GGTGAGCCTGAAGGAGAAGAAGAGGTTCCAGGTCCGAGGGAGGCCATCCT
GGACATGCTTGAAAAGGCACGGGCGGAGGCGGCCGTCAAAGCGGCCTAGG
TACCTTCTTGGGGCCGGGGCGGATCCGAACAGCCGCAGCGAGTCGGGCGA
GCGTCCGGGAGACAGCTTCGACGCCGTCTTTGTCCCCGCGGTGGAGGAGA
ACTTCTTTACCGCCGACGAAGAGGCCGAACGTCGCGAGAGCGCCGCAAGC
GCAGGTCAGGAGGAGGAGGAGGAAGGGGAAGAGGAAGAGGAGGACATAAT
GTTTGATGACGAGGAGGAGAAGGACATAATGTTTGATGAAGAGGAGGTCA
AAGACGACGACAAGGACGTGGTGTCGAAAGAAGGGAACGAGGGCGAAGGA
GGAGGAGACGGTGAGCCTGAAGGAGAAGAAGAGGTTCCAGGTCCGAGGGA
GGCCATCCTGGACATGCTTGAAAAGGCACGGGCGGAGGCGGCCGTCAAAG
CGGCCTAG
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