mRNA_L-elsbetiae_contig17429.4893.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17429.4893.1
Unique NamemRNA_L-elsbetiae_contig17429.4893.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17429.4893.1 vs. uniprot
Match: A0A6H5KIA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.740e-8
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:    4 THVITSGGGYLSIPDDKLDEFEKQYATEILHANRSVTLSELPSDPVFPMFFKINHLDRDGLTNEGMQEICTVVVGVLSRY 243
            TH + +GG  + +P ++ DEF + YATE+   N++++ SEL S+P F M+F I+ LD   L+ E    I +++ GV+  +
Sbjct:   20 THTLMTGG-VVGVPHEQYDEFLRLYATEVESKNKTISFSELRSNPAFCMYFDIDLLDSKELSTEVGLRIYSLIQGVVRSF 98
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BLAST of mRNA_L-elsbetiae_contig17429.4893.1 vs. uniprot
Match: D8LP78_ECTSI (EsV-1-45 n=2 Tax=root TaxID=1 RepID=D8LP78_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 9.550e-8
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   25 GGYLSIPDDKLDEFEKQYATEILHANRSVTLSELPSDPVFPMFFKINHLDRDGLTNEGMQEICTVVVGVLSRY 243
            GG +S+PD+  DEF + YA E+   N++++ SEL SDPVF M+F ++ L    L       I +V+  V+  Y
Sbjct:   25 GGVVSVPDENYDEFLQLYAEEVRSKNKTLSFSELRSDPVFCMYFDVDMLGTGVLGAAESSRIFSVIQSVIRSY 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17429.4893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIA7_9PHAE2.740e-836.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP78_ECTSI9.550e-838.36EsV-1-45 n=2 Tax=root TaxID=1 RepID=D8LP78_ECTSI[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17429contigL-elsbetiae_contig17429:2679..2921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.1846664-CDS-L-elsbetiae_contig17429:2678..29211622815726.1846664-CDS-L-elsbetiae_contig17429:2678..2921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17429 2679..2921 -
1691683062.5988579-CDS-L-elsbetiae_contig17429:2678..29211691683062.5988579-CDS-L-elsbetiae_contig17429:2678..2921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17429 2679..2921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17429.4893.1prot_L-elsbetiae_contig17429.4893.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17429 2679..2921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17429.4893.1

>prot_L-elsbetiae_contig17429.4893.1 ID=prot_L-elsbetiae_contig17429.4893.1|Name=mRNA_L-elsbetiae_contig17429.4893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
ITHVITSGGGYLSIPDDKLDEFEKQYATEILHANRSVTLSELPSDPVFPM
FFKINHLDRDGLTNEGMQEICTVVVGVLSRY
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mRNA from alignment at L-elsbetiae_contig17429:2679..2921-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17429.4893.1 ID=mRNA_L-elsbetiae_contig17429.4893.1|Name=mRNA_L-elsbetiae_contig17429.4893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=243bp|location=Sequence derived from alignment at L-elsbetiae_contig17429:2679..2921- (Laminarionema elsbetiae ELsaHSoW15)
ATCACACACGTTATAACGTCCGGAGGAGGGTATTTGAGCATCCCGGACGA
CAAGCTCGACGAGTTTGAGAAACAATATGCCACGGAAATCCTGCATGCCA
ACAGAAGCGTAACCCTATCGGAATTACCCTCCGACCCGGTGTTTCCCATG
TTCTTCAAGATAAATCATCTCGATCGAGATGGGCTGACGAACGAAGGCAT
GCAGGAAATATGTACTGTTGTGGTTGGTGTTCTTAGTCGGTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17429:2679..2921-

>mRNA_L-elsbetiae_contig17429.4893.1 ID=mRNA_L-elsbetiae_contig17429.4893.1|Name=mRNA_L-elsbetiae_contig17429.4893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig17429:2679..2921- (Laminarionema elsbetiae ELsaHSoW15)
ATCACACACGTTATAACGTCCGGAGGAGGGTATTTGAGCATCCCGGACGA
CAAGCTCGACGAGTTTGAGAAACAATATGCCACGGAAATCCTGCATGCCA
ACAGAAGCGTAACCCTATCGGAATTACCCTCCGACCCGGTGTTTCCCATG
TTCTTCAAGATAAATCATCTCGATCGAGATGGGCTGACGAACGAAGGCAT
GCAGGAAATATGTACTGTTGTGGTTGGTGTTCTTAGTCGGTACATCACAC
ACGTTATAACGTCCGGAGGAGGGTATTTGAGCATCCCGGACGACAAGCTC
GACGAGTTTGAGAAACAATATGCCACGGAAATCCTGCATGCCAACAGAAG
CGTAACCCTATCGGAATTACCCTCCGACCCGGTGTTTCCCATGTTCTTCA
AGATAAATCATCTCGATCGAGATGGGCTGACGAACGAAGGCATGCAGGAA
ATATGTACTGTTGTGGTTGGTGTTCTTAGTCGGTAC
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