mRNA_L-elsbetiae_contig17424.4892.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17424.4892.1
Unique NamemRNA_L-elsbetiae_contig17424.4892.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17424.4892.1 vs. uniprot
Match: D7FSL8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.250e-8
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 2 
Query:    2 FCRDHAKDGMVNVAKKGCAHPGCTKQPSYGKAGSK 106
            FC  HAK GM+NV KK C HPGCTK+PS+G AGSK
Sbjct:    5 FCSQHAKPGMINVRKKRCCHPGCTKKPSFGTAGSK 39
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BLAST of mRNA_L-elsbetiae_contig17424.4892.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.040e-7
Identity = 24/35 (68.57%), Postives = 26/35 (74.29%), Query Frame = 2 
Query:    2 FCRDHAKDGMVNVAKKGCAHPGCTKQPSYGKAGSK 106
            FC  H +  MVNV  K C HPGCTKQPSYG+AGSK
Sbjct:   24 FCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAGSK 58
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17424.4892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSL8_ECTSI5.250e-871.43EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K5N3_9PHAE5.040e-768.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17424contigL-elsbetiae_contig17424:1347..2732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1386
Cds size717
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17424.4892.1prot_L-elsbetiae_contig17424.4892.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17424 1375..2091 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.1168344-UTR-L-elsbetiae_contig17424:1346..13741622815726.1168344-UTR-L-elsbetiae_contig17424:1346..1374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17424 1347..1374 +
1691683062.5654218-UTR-L-elsbetiae_contig17424:1346..13741691683062.5654218-UTR-L-elsbetiae_contig17424:1346..1374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17424 1347..1374 +
1622815726.140535-UTR-L-elsbetiae_contig17424:2091..27321622815726.140535-UTR-L-elsbetiae_contig17424:2091..2732Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17424 2092..2732 +
1691683062.586781-UTR-L-elsbetiae_contig17424:2091..27321691683062.586781-UTR-L-elsbetiae_contig17424:2091..2732Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17424 2092..2732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.1276124-CDS-L-elsbetiae_contig17424:1374..20911622815726.1276124-CDS-L-elsbetiae_contig17424:1374..2091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17424 1375..2091 +
1691683062.5769355-CDS-L-elsbetiae_contig17424:1374..20911691683062.5769355-CDS-L-elsbetiae_contig17424:1374..2091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17424 1375..2091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17424.4892.1

>prot_L-elsbetiae_contig17424.4892.1 ID=prot_L-elsbetiae_contig17424.4892.1|Name=mRNA_L-elsbetiae_contig17424.4892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
MVNVAKKGCAHPGCTKQPSYGKAGSKPEYCSGHAKDGMVVVVSKRCMHPG
CTKWPSYGKAGSKAEYCSGHAKDGMVNVKNKRCTHPGCTKQPSCGKAGSK
PEYCSSHAKDGMANVKNKRCTHPGCTKQPSYGKAGSEPEYCSGHAKNGTV
NVKNKRCTHSGCTKVPSYGKAGSKPECCSGHAKGGMVNVKNKRCTHPGCT
KVPSYGKAGSKPEYCCGHAKDRMVDVVSKKCTHPGCTK*
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mRNA from alignment at L-elsbetiae_contig17424:1347..2732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17424.4892.1 ID=mRNA_L-elsbetiae_contig17424.4892.1|Name=mRNA_L-elsbetiae_contig17424.4892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig17424:1347..2732+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCTGCCGTGATCATGCCAAGGACGGGATGGTGAATGTCGCCAAAAAGG
GGTGTGCACATCCAGGCTGCACTAAGCAGCCGTCATACGGCAAGGCTGGC
AGCAAGCCAGAGTACTGCTCTGGTCATGCGAAGGATGGGATGGTGGTCGT
CGTCAGCAAGAGATGCATGCATCCAGGCTGCACCAAGTGGCCGTCATACG
GCAAGGCTGGCAGCAAGGCAGAGTACTGCTCTGGCCATGCGAAGGACGGG
ATGGTGAACGTGAAGAACAAGCGGTGCACACATCCAGGGTGCACTAAGCA
GCCGTCATGCGGCAAGGCTGGCAGCAAGCCGGAGTACTGCTCTAGCCATG
CGAAGGATGGGATGGCGAACGTAAAGAACAAGAGGTGCACACATCCAGGG
TGCACTAAGCAGCCGTCATACGGCAAGGCTGGTAGCGAGCCAGAGTACTG
CTCTGGTCATGCGAAGAACGGGACGGTGAATGTGAAGAACAAGAGATGCA
CACATTCAGGCTGCACCAAGGTGCCGTCATACGGCAAGGCTGGCAGCAAG
CCAGAGTGCTGCTCTGGTCATGCGAAGGGCGGGATGGTGAACGTGAAGAA
CAAGCGGTGCACACATCCAGGATGCACCAAGGTGCCGTCATACGGCAAGG
CTGGCAGCAAGCCAGAGTACTGCTGTGGTCATGCGAAGGATAGAATGGTG
GACGTCGTCAGCAAGAAATGCACACATCCAGGGTGCACTAAGTAGCCGTC
ATACGGCAAGGCTGGCAGCAAGCCAGAGTACTGCTCTAGCCATGCGAAGG
ACGGGACGGTGAATGTGAAGAACAAGAGGTGCGCACATCCAGGCTGCACC
AAGTGGCCGTCATACGGCAAGGCTGGCAGCAAGCCAGAGTACTGCTCTAG
CCATGCGAAGGGCGGGATGGTGGACGTGACAAGCAAGAGGTGCACCCATC
CTGGATGCACCACAAGGCCCCACCACGGCGAGGACGGCAAGTTCTGTGCA
CAGCACGCAGTAGACGACATGGCGCGTCTCCGTCCTTCCCAGAGCAGATC
TAGCGGTGTCGGCAATAAGAGTTGCAGGCCTGGGACTGTTGGCTCGGAAG
CAAGCGGGGGTGGTACAGCGCGCCGTGCTAGCTCCGGGGGGAGGAGAAGC
AGCCGGTTGGATTCGCCTCCACTGGCAGAGAGTCCTTCCAGCAAGAGCAC
AAAGACGAAGAAGCGAGCCTCGGCTGTTGTGGGGAACCTACGGCCAGTTC
GAGTGAAGAGAGAGCGTGTTGACAGCAGTGGCGAGATGGACGAAGACCAA
TCCAGGGCATGGTCGGAGCCGGATGCTGTAGTGAAGGCAGAAGACATGGA
GGTGCCCTGTAAGGTGGAATCTCCGGAAGCTGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17424:1347..2732+

>mRNA_L-elsbetiae_contig17424.4892.1 ID=mRNA_L-elsbetiae_contig17424.4892.1|Name=mRNA_L-elsbetiae_contig17424.4892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig17424:1347..2732+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAATGTCGCCAAAAAGGGGTGTGCACATCCAGGCTGCACTAAGCA
GCCGTCATACGGCAAGGCTGGCAGCAAGCCAGAGTACTGCTCTGGTCATG
CGAAGGATGGGATGGTGGTCGTCGTCAGCAAGAGATGCATGCATCCAGGC
TGCACCAAGTGGCCGTCATACGGCAAGGCTGGCAGCAAGGCAGAGTACTG
CTCTGGCCATGCGAAGGACGGGATGGTGAACGTGAAGAACAAGCGGTGCA
CACATCCAGGGTGCACTAAGCAGCCGTCATGCGGCAAGGCTGGCAGCAAG
CCGGAGTACTGCTCTAGCCATGCGAAGGATGGGATGGCGAACGTAAAGAA
CAAGAGGTGCACACATCCAGGGTGCACTAAGCAGCCGTCATACGGCAAGG
CTGGTAGCGAGCCAGAGTACTGCTCTGGTCATGCGAAGAACGGGACGGTG
AATGTGAAGAACAAGAGATGCACACATTCAGGCTGCACCAAGGTGCCGTC
ATACGGCAAGGCTGGCAGCAAGCCAGAGTGCTGCTCTGGTCATGCGAAGG
GCGGGATGGTGAACGTGAAGAACAAGCGGTGCACACATCCAGGATGCACC
AAGGTGCCGTCATACGGCAAGGCTGGCAGCAAGCCAGAGTACTGCTGTGG
TCATGCGAAGGATAGAATGGTGGACGTCGTCAGCAAGAAATGCACACATC
CAGGGTGCACTAAGTAGATGGTGAATGTCGCCAAAAAGGGGTGTGCACAT
CCAGGCTGCACTAAGCAGCCGTCATACGGCAAGGCTGGCAGCAAGCCAGA
GTACTGCTCTGGTCATGCGAAGGATGGGATGGTGGTCGTCGTCAGCAAGA
GATGCATGCATCCAGGCTGCACCAAGTGGCCGTCATACGGCAAGGCTGGC
AGCAAGGCAGAGTACTGCTCTGGCCATGCGAAGGACGGGATGGTGAACGT
GAAGAACAAGCGGTGCACACATCCAGGGTGCACTAAGCAGCCGTCATGCG
GCAAGGCTGGCAGCAAGCCGGAGTACTGCTCTAGCCATGCGAAGGATGGG
ATGGCGAACGTAAAGAACAAGAGGTGCACACATCCAGGGTGCACTAAGCA
GCCGTCATACGGCAAGGCTGGTAGCGAGCCAGAGTACTGCTCTGGTCATG
CGAAGAACGGGACGGTGAATGTGAAGAACAAGAGATGCACACATTCAGGC
TGCACCAAGGTGCCGTCATACGGCAAGGCTGGCAGCAAGCCAGAGTGCTG
CTCTGGTCATGCGAAGGGCGGGATGGTGAACGTGAAGAACAAGCGGTGCA
CACATCCAGGATGCACCAAGGTGCCGTCATACGGCAAGGCTGGCAGCAAG
CCAGAGTACTGCTGTGGTCATGCGAAGGATAGAATGGTGGACGTCGTCAG
CAAGAAATGCACACATCCAGGGTGCACTAAGTAG
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