mRNA_L-elsbetiae_contig174.4877.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig174.4877.1
Unique NamemRNA_L-elsbetiae_contig174.4877.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig174.4877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig174contigL-elsbetiae_contig174:42991..44314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size297
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig174.4877.1prot_L-elsbetiae_contig174.4877.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig174 42991..43500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.8895023-CDS-L-elsbetiae_contig174:42990..430601622815723.8895023-CDS-L-elsbetiae_contig174:42990..43060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig174 42991..43060 -
1691683060.989498-CDS-L-elsbetiae_contig174:42990..430601691683060.989498-CDS-L-elsbetiae_contig174:42990..43060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig174 42991..43060 -
1622815723.903347-CDS-L-elsbetiae_contig174:43399..435001622815723.903347-CDS-L-elsbetiae_contig174:43399..43500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig174 43400..43500 -
1691683061.0002086-CDS-L-elsbetiae_contig174:43399..435001691683061.0002086-CDS-L-elsbetiae_contig174:43399..43500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig174 43400..43500 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.9145591-UTR-L-elsbetiae_contig174:43500..435291622815723.9145591-UTR-L-elsbetiae_contig174:43500..43529Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig174 43501..43529 -
1691683061.0099258-UTR-L-elsbetiae_contig174:43500..435291691683061.0099258-UTR-L-elsbetiae_contig174:43500..43529Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig174 43501..43529 -
1622815723.9305584-UTR-L-elsbetiae_contig174:44217..443141622815723.9305584-UTR-L-elsbetiae_contig174:44217..44314Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig174 44218..44314 -
1691683061.020023-UTR-L-elsbetiae_contig174:44217..443141691683061.020023-UTR-L-elsbetiae_contig174:44217..44314Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig174 44218..44314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig174.4877.1

>prot_L-elsbetiae_contig174.4877.1 ID=prot_L-elsbetiae_contig174.4877.1|Name=mRNA_L-elsbetiae_contig174.4877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
MPHITGRRPLRHLSAFWLCFFSLMPWKLSSAQCIFDATVTFPVNTGGNSP
YNRLAMD
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mRNA from alignment at L-elsbetiae_contig174:42991..44314-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig174.4877.1 ID=mRNA_L-elsbetiae_contig174.4877.1|Name=mRNA_L-elsbetiae_contig174.4877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1324bp|location=Sequence derived from alignment at L-elsbetiae_contig174:42991..44314- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGCACGCCGCTCCACAAATCCCTGACCACCGCGTGCAGCGAGGGCGC
ACGCGACCGACAAAAATCGTGCGCGCGGTAGGGGGGAACGTCTCTCGGTG
AGCACCAAGCATCAACAGGGCAACTTCAACAGAGCGTATGATCGGCCAAT
AATAGTCTATGAGTCCCGTCTCGCATGACTTGGCGCATGCTGCGGATGCG
CATGCAGCGAGATCTAGTAGCGGTGCGAATCCCTACACCCTTGCTGCTTC
CCGTTGTGTATGGTTTCGTGCTCAGCCCGTGGGTCGAAAATGCCAGAATT
GTTCACTCTGTACATATATACAACGTCTTCTCCATCGCCTACTATGTACT
CGTATCTATCTAGGCTGTAGATAAAATAAATGTGAAACGCTTTTGAGAAA
TTTCTGGAAATTTCGGGCTCTCTGTTTCCTCATGTAGTCGAGGTAGAGAA
TACCATACCATTTCTGATGCCTCTATAGAAAACGAATCGATCTACAAGCC
TTCCTGAAACGGGTCCCCCAGACAGCAGTTTGTAGACTCGTTGCTACATA
CTACTGCTGTTGTGATCGTCCAAAGCGATGTGTGTGTTACTAGCATTTTT
CAACGTGCGGAGAGCTACTTTCCTCGTCCACGAACTAAACAGGCGTTTCC
CCCAAAATCCAGCTTACCTGCATGGTCCTGCCACCGAGATATCAACCCCA
TCGAACACCATTAGATTACATAGGTTTTCAGTGCTCACGTCGTTATGTGT
ACTAAATGTATGTATCATCTGTCCCTGGCCAACAGATTCTGCGGTGCCAC
CAAAAGGCTGCGGCATGCCCCACATAACAGGGCGACGGCCACTCCGGCAC
CTCAGCGCCTTTTGGCTGTGTTTCTTTTCCTTGATGCCATGGAAATTATC
GTCCGCACAGTGCATGTGAGCTATATTTGTGCCATGTGGCGTCTGGAGTT
ACTGGACAGAGACGTTGCGCGCCACCTACTTTTAGCCTCTGCCTGCTCAG
CACTTCATGGTTGCGACCGTCTTATTTCGTCGAAAGGCAGATTGTAGACA
ATCGAAGAGGCGTTGAATTTGACTCACTCCTTGTGAGACAGAATCCCGGC
ATCCCAAAACAAAACAAATAGATATGCCTCATTCATAGGGTCAGTTTAGT
CCACTTGACACGATTTCAGGATGCTCGCACTTAGAACCTGCCGTGGTGTG
TTTCGCAGCGAGAGCACTTGACGCCTTTCTCCCGATCGTCTGCGACATGT
TCAGATTTGATGCTACAGTCACTTTTCCAGTTAATACTGGAGGTAACTCG
CCGTACAACAGACTTGCGATGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig174:42991..44314-

>mRNA_L-elsbetiae_contig174.4877.1 ID=mRNA_L-elsbetiae_contig174.4877.1|Name=mRNA_L-elsbetiae_contig174.4877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig174:42991..44314- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCACATAACAGGGCGACGGCCACTCCGGCACCTCAGCGCCTTTTG
GCTGTGTTTCTTTTCCTTGATGCCATGGAAATTATCGTCCGCACAGTGCA
TATGCCCCACATAACAGGGCGACGGCCACTCCGGCACCTCAGCGCCTTTT
GGCTGTGTTTCTTTTCCTTGATGCCATGGAAATTATCGTCCGCACAGTGC
ATATTTGATGCTACAGTCACTTTTCCAGTTAATACTGGAGGTAACTCGCC
GTACAACAGACTTGCGATGGACATTTGATGCTACAGTCACTTTTCCAGTT
AATACTGGAGGTAACTCGCCGTACAACAGACTTGCGATGGAC
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