mRNA_L-elsbetiae_contig1739.4871.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1739.4871.1
Unique NamemRNA_L-elsbetiae_contig1739.4871.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1739.4871.1 vs. uniprot
Match: D8LRX5_ECTSI (LigB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRX5_ECTSI)

HSP 1 Score: 406 bits (1043), Expect = 2.010e-140
Identity = 191/259 (73.75%), Postives = 213/259 (82.24%), Query Frame = 2 
Query:   38 MRPIDSTSPAAKWYRTFTHKWSKPAAIVVVSAHFEGRGTVEVTTGEKHPLFFDYYGFPDYCYDLEYAPPGQPALANRIIELLRTSGLKARGNSKRGYDHGVFIPLKLMYPGADIPVVQVSLLSSLDPEEHLKIGTALKTLAQEQDVLIVGSGQATHGFDSFSKPHRPGQGPPKEAAFVDWLKETATSAALAPEERRRRLKEWEAEAPHGRNAHPREEHLLPLLVAQGCNGFRAGEVILDDWPAGGMSLACVAFWSAGGE 814
            M+ ID+TS AA+WYRTFT KW+KP+AIVVVSAH+EGRG V+VTTGEKHPLFFDYYGFPDYCYDLEYAPPG P LA RIIELL   G  ARG+  RGYDHG FIPLKLMYP AD+PVVQVSLL  LDPE+HLK+G  LK L  E+DVLIVGSGQATHG  S  +P+ PG+G PKE AFVDWLKETA S A+ PEER+RRL+EWE +APHGRNAHPREEHLLPL VA GC GF+ G +I DD+  G MSLACV FW  GGE
Sbjct:    1 MKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADVPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLIVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPGGGE 259
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BLAST of mRNA_L-elsbetiae_contig1739.4871.1 vs. uniprot
Match: A0A836CEX8_9STRA (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX8_9STRA)

HSP 1 Score: 227 bits (579), Expect = 7.900e-70
Identity = 129/269 (47.96%), Postives = 161/269 (59.85%), Query Frame = 2 
Query:    2 GPAFFMKGGSGMMRPIDSTSPAAKWYRTFTHKWSKPAAIVVVSAHFEGRGTVEVTTGEKHP-LFFDYYGFPDYCYDLEYAPPGQPALANRIIELLRTSGLKARGNSKRGYDHGVFIPLKLMYPGADIPVVQVSLLSSLDPEEHLKIGTALKTLAQEQDVLIVGSGQATHGFDSFSKPHRPGQGPPKE---AAFVDWLKETATSAALAPEERRRRLKEWEAEAPHGRNAHPREEHLLPLLVAQGCNGFRAGEVILDDWPAGGMSLACVAF 796
            GP FF +  +G    ID  S  A  +R  +    KP  IV+ +AH+E  G     TG+  P L +DYYGFP   Y L Y  PG P LA  I+ LL+ +G+ A    +RG+DHGVFIPLK++YP AD+PVV +SL S+LDP  H+ +G AL  LA  + VL+ GSG ATH           G+G P E    AF+DWLK T      A +ER RRL  W  EAPH R++HPREEHLLPL VA G  GF AGE++LD    GGMS+A  AF
Sbjct:   22 GPCFFYEA-AGPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAG-RGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSA-QERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAF 287
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BLAST of mRNA_L-elsbetiae_contig1739.4871.1 vs. uniprot
Match: A0A496XGL0_9GAMM (Dioxygenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496XGL0_9GAMM)

HSP 1 Score: 205 bits (522), Expect = 1.270e-61
Identity = 111/222 (50.00%), Postives = 142/222 (63.96%), Query Frame = 2 
Query:   89 THKWSKPAAIVVVSAHFEGRGTVEVTTGEKHPLFFDYYGFPDYCYDLEYAPPGQPALANRIIELLRTSGLKARGNSKRGYDHGVFIPLKLMYPGADIPVVQVSLLSSLDPEEHLKIGTALKTLAQEQDVLIVGSGQATHGFDSFSKPHRPGQGPPKEAAFVDWLKETATSAALAPEERRRRLKEWEAEAPHGRNAHPREEHLLPLLVAQGCNGFRAGEVILD 754
            T    +P+AI+V+SAH+E  G   +T+G+   L +DYYGFPD  YD+EY   G P LA RI  LL  +G++AR +  RG+DHG+F+PLKLMYP A IP VQ+SL+++LDP+ H+ IG AL  L +E +VLIVGSG + H  D+F      G    K  AF DWL  T T+  + P ER RRL EW A+AP  R  HPREEHLLPL V  G +   A  V  D
Sbjct:   33 TANLGQPSAILVISAHWE-EGVATITSGKSPSLIYDYYGFPDEAYDVEYPAAGDPILAERIFGLLEKAGIEARMDDHRGFDHGLFVPLKLMYPAASIPCVQLSLINNLDPQTHINIGKALSDLRKE-NVLIVGSGLSFHNMDAFLSKSD-GVMDAKNRAFEDWLAHTCTNNNIPPPERERRLIEW-ADAPAARYCHPREEHLLPLHVCYGLSNSVAARVFDD 250
[Close]
BLAST of mRNA_L-elsbetiae_contig1739.4871.1 vs. uniprot
Match: A0A2M7G2W7_9BACT (Dioxygenase n=1 Tax=bacterium (Candidatus Blackallbacteria) CG17_big_fil_post_rev_8_21_14_2_50_48_46 TaxID=2014261 RepID=A0A2M7G2W7_9BACT)

HSP 1 Score: 204 bits (518), Expect = 5.560e-61
Identity = 120/253 (47.43%), Postives = 151/253 (59.68%), Query Frame = 2 
Query:    2 GPAFFMKGGSGMMRPIDSTSPAAKWYRTFTHKWSKPAAIVVVSAHFEGRGTVEVTTGEKHPLFFDYYGFPDYCYDLEYAPPGQPALANRIIELLRTSGLKARGNSKRGYDHGVFIPLKLMYPGADIPVVQVSLLSSLDPEEHLKIGTALKTLAQEQDVLIVGSGQATHGFDSFSKPHRPGQGPPKEA-AFVDWLKETATSAALAPEERRRRLKEWEAEAPHGRNAHPREEHLLPLLVAQGCNGFRAGEVILDD 757
            GP FFM    G   P DS    A W +   H    P AIVVVSAH+E    V +T   + PL +DYYGFP++ Y L Y  PG P LA +I   L    + AR +++RGYDHGVFIPLKL+YP A IPVVQ+SLL+SLDP  HL+IG AL  L +E+ VL++GSG + H    F      GQ   +++ AF  WL +T  ++A   EER   L +W A+AP GR  HPREEHLLPL+V  G      GE +  D
Sbjct:   14 GPCFFMDWTWG---PADSWDKLADWLKNLRHTLPVPQAIVVVSAHWENSAEVLITGHAQPPLLYDYYGFPEHTYQLSYPAPGAPDLAGKIQTHLAAQAIPARIDAERGYDHGVFIPLKLIYPEAQIPVVQISLLASLDPARHLEIGKALAPL-REEGVLLLGSGMSFHNLRVF------GQNVMEQSQAFDAWLTQTLQASA---EERNLALADW-AKAPSGRFCHPREEHLLPLMVVAGAAESAKGEKVFTD 252
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BLAST of mRNA_L-elsbetiae_contig1739.4871.1 vs. uniprot
Match: A0A0H5QYQ3_9EUKA (LigB domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QYQ3_9EUKA)

HSP 1 Score: 204 bits (519), Expect = 1.450e-60
Identity = 126/271 (46.49%), Postives = 155/271 (57.20%), Query Frame = 2 
Query:    2 GPAFFMKGGSGM-MRPIDSTSPAAK-----WYRTFTHKWSKPAAIVVVSAHFEGRGTVEVTTGEKHPLFFDYYGFPDYCYDLEYAPPGQPALANRIIELLRTSGLKARGNSKRGYDHGVFIPLKLMYPGADIPVVQVSLLSSLDPEEHLKIGTALKTLAQEQDVLIVGSGQATHG----FDSFSKPHRPGQGPPKEAAFVDWLKETATSAALAPEERRRRLKEWEAEAPHGRNAHPREEHLLPLLVAQGCNGFRAGEVILDDWPAGGMSLA 784
            GP+FFM  GS   M+ ID+TS   +       R +     KP AI+VVSAH+E     EV       L FDYYGFP   Y L+Y  P    LAN I+ELL  +GL    N  RG DHGVFIPL L++P ADIPVVQVSL  S DP+ HL +G AL  L + + VLI+GSG ATH     F+S S P    +       F DWL +T   +   P++RR R+ +WE +AP+ R AHPREEHLLPLLV  G +G      +   W  G MSLA
Sbjct:   43 GPSFFMDVGSNHPMKSIDATSETCRNLKQCMTRVYKSSDHKPKAIIVVSAHWEATSKFEVLMKNPPDLLFDYYGFPKETYQLKYNCPFDEGLANEIVELLSQAGLPVGVNKSRGLDHGVFIPLMLLFPNADIPVVQVSLHDSSDPKSHLALGAALAPL-RSKGVLIIGSGMATHNLGETFESTSNPVSWAK------QFQDWLDDTVLRSE--PDQRRSRMIDWE-KAPNARRAHPREEHLLPLLVVIGASGEEPMAKLWGGWSGGHMSLA 303
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BLAST of mRNA_L-elsbetiae_contig1739.4871.1 vs. uniprot
Match: A0A522CMS9_9PROT (Dioxygenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A522CMS9_9PROT)

HSP 1 Score: 200 bits (508), Expect = 1.720e-59
Identity = 117/253 (46.25%), Postives = 147/253 (58.10%), Query Frame = 2 
Query:    2 GPAFFMKGGSGMMRPIDSTSPAAKWYRTFTHKW-SKPAAIVVVSAHFEGRGTVEVTTGEKHPLFFDYYGFPDYCYDLEYAPPGQPALANRIIELLRTSGLKARGNSKRGYDHGVFIPLKLMYPGADIPVVQVSLLSSLDPEEHLKIGTALKTLAQEQDVLIVGSGQATHGFDSFSKPHRPGQGPPKEAAFVDWLKETATSAALAPEERRRRLKEWEAEAPHGRNAHPREEHLLPLLVAQGCNGFRAGEVILDD 757
            GP FFM        P D+      W ++       KP AI+V+SAH+E      V +    PL +DYYGFP   Y+L+Y  PG P LA ++  LL  +GL AR N  RGYDHGVF+PLKL+YP A+IPVVQ+SL  +LDP +HL  G AL +L +++ VLIVGSG + H  + F +  R G        F  WL + ATSA   P++R   L  W AEAP  R AHPREEHLLPL+V  G  G  AG   L D
Sbjct:   14 GPCFFMD-----WDPPDTWKKMGDWLKSLPSSMPEKPKAILVISAHWE-EDAFTVMSNPAPPLIYDYYGFPPETYELKYPAPGAPDLAKKVAGLLENAGLPARLNDARGYDHGVFVPLKLIYPDAEIPVVQLSLRRNLDPAQHLAAGRALASL-RDEGVLIVGSGMSYHNLEKFFRGDRQGD----SQKFDAWLTQAATSA---PQQRDDMLVHW-AEAPSARQAHPREEHLLPLMVVAGAAGGDAGHQTLSD 251
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BLAST of mRNA_L-elsbetiae_contig1739.4871.1 vs. uniprot
Match: A0A0G4J6W7_PLABS (LigB domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J6W7_PLABS)

HSP 1 Score: 201 bits (510), Expect = 1.870e-59
Identity = 123/266 (46.24%), Postives = 151/266 (56.77%), Query Frame = 2 
Query:    2 GPAFFMKGGSGM-MRPIDSTSP-AAKWYRTFTHKWS---KPAAIVVVSAHFEGRGTVEVTTGEKHPLFFDYYGFPDYCYDLEYAPPGQPALANRIIELLRTSGLKARGNSKRGYDHGVFIPLKLMYPGADIPVVQVSLLSSLDPEEHLKIGTALKTLAQEQDVLIVGSGQATHGFDSFSKPHRPGQGPPKEAAFVDWLKETATSAALAPEERRRRLKEWEAEAPHGRNAHPREEHLLPLLVAQGCNGFRAGEVILDDWPAGGMSLA 784
            GP FFM+   G  M+ ID+ S   AK    F   +    +P AI+VVSAH+EG   +EV      PL FDYYGFP+ CY   Y  P   +LA  +  LL +SG+    N++RG DHGVFIPL L+ P A IPVVQ+SL  SLD E H+++G  L  L + Q VLI+GSG ATH            Q     A F  WL  T  ++   P++RR+RL  W  +APH R AHPREEHLLPLLV  G  G  A       WPAG MSLA
Sbjct:   23 GPGFFMRVPEGHPMKSIDADSVYPAKMKSCFPELYGGDRRPKAILVVSAHWEGNRAIEVLVRSPSPLLFDYYGFPEECYKYTYNCPTDLSLAATVQNLLESSGITCGRNTERGLDHGVFIPLMLLAPDAGIPVVQLSLHPSLDAELHIRLGEVLSPL-RSQGVLILGSGMATHNLSLMRHSTSSDQLEKWAADFHAWLDTTLLNST--PDDRRKRLIAWAQQAPHARKAHPREEHLLPLLVCVGAAGSGAMSKRWAGWPAGHMSLA 285
[Close]
BLAST of mRNA_L-elsbetiae_contig1739.4871.1 vs. uniprot
Match: A0A8K1CAG0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAG0_PYTOL)

HSP 1 Score: 200 bits (508), Expect = 2.250e-59
Identity = 111/242 (45.87%), Postives = 155/242 (64.05%), Query Frame = 2 
Query:    5 PAFFMKGGSGMMRPIDSTSPAA--KWYRTFTHKW--SKPAAIVVVSAHFEGRGTVEVTTGEKHPLFFDYYGFPDYCYDLEYAPPGQPALANRIIELLRTSGLKARGNSKRGYDHGVFIPLKLMYPGADIPVVQVSLLSSLDPEEHLKIGTALKTLAQEQDVLIVGSGQATHGFDSFSKPHRPGQGPPKEAAFVDWLKETATSAALAPEERRRRLKEWEAEAPHGRNAHPREEHLLPLLVAQG 718
            P+ F+  G G M  ++  S     +W + F   +  +KPAAIV+V+AH+EG  T ++T+     LF+DYYGFP   Y+++Y  PG P LA RI +LL    + +  ++KRGYDHGVFIPLKLM+P AD+PVVQ+S+  S DPE H+K+G AL++L +E ++LIVGSG + H F  F  P+           F D+ ++ A      P ERRRRL++W  +AP+ R  HPREEHL+PLLVA G
Sbjct:    8 PSVFVPHGGGPMPLMNDPSHRTMIEWLKNFQRDYVTTKPAAIVLVTAHWEGEVT-QITSSPAPELFYDYYGFPPETYEIKYPAPGHPELAKRIQDLLANQSIPSELDAKRGYDHGVFIPLKLMFPDADVPVVQMSVYRSFDPESHIKLGEALRSL-REDNILIVGSGFSFHSFKYFFGPNS-ALANKVSVPFHDYFRD-ALVETKDPAERRRRLQQW-TKAPYAREVHPREEHLMPLLVAAG 244
[Close]
BLAST of mRNA_L-elsbetiae_contig1739.4871.1 vs. uniprot
Match: UPI0003FF6A3D (dioxygenase n=1 Tax=Desulfogranum japonicum TaxID=231447 RepID=UPI0003FF6A3D)

HSP 1 Score: 199 bits (507), Expect = 3.690e-59
Identity = 113/230 (49.13%), Postives = 145/230 (63.04%), Query Frame = 2 
Query:  104 KPAAIVVVSAHFEGRGTVEVTTGEKHPLFFDYYGFPDYCYDLEYAPPGQPALANRIIELLRTSGLKARGNSKRGYDHGVFIPLKLMYPGADIPVVQVSLLSSLDPEEHLKIGTALKTLAQEQDVLIVGSGQATHGFDSFSKPHRPGQGPPKEA--AFVDWLKETATSAALAPEERRRRLKEWEAEAPHGRNAHPREEHLLPLLVAQGCNGFRA-GEVILDDWPAGGMSLA 784
            KP AI+V+SAH+E   T  + +G   PL +DYYGFP+  Y L Y  PG P LA +I ELL   GL AR +++RG+DHG+FIPLK+MYP ADIP +Q+SL+  LDP  HLK+G AL  L Q Q++L++GSG + H    F      G  P  EA   F DWL ET T AAL+P +R  +L  W ++AP  R  HPREEHLLPL V  G  G+   G  I DD+  G  ++A
Sbjct:   47 KPEAILVISAHWEEE-TATILSGSHPPLLYDYYGFPEEAYSLTYPAPGNPGLAKKISELLEEQGLTARPDTERGFDHGLFIPLKMMYPRADIPSLQLSLVKGLDPAIHLKLGKALHPLLQ-QNILVIGSGFSFHNMREFLWD---GSNPADEANDQFQDWLVETCT-AALSPAQREEQLLHW-SQAPSARYCHPREEHLLPLHVCVGMAGYNCQGTKIFDDYILGKRAVA 269
[Close]
BLAST of mRNA_L-elsbetiae_contig1739.4871.1 vs. uniprot
Match: UPI001EF8DF4C (dioxygenase n=1 Tax=Oceanisphaera litoralis TaxID=225144 RepID=UPI001EF8DF4C)

HSP 1 Score: 199 bits (505), Expect = 5.980e-59
Identity = 103/205 (50.24%), Postives = 143/205 (69.76%), Query Frame = 2 
Query:  104 KPAAIVVVSAHFEGRGTVEVTTGEKHPLFFDYYGFPDYCYDLEYAPPGQPALANRIIELLRTSGLKARGNSKRGYDHGVFIPLKLMYPGADIPVVQVSLLSSLDPEEHLKIGTALKTLAQEQDVLIVGSGQATHGFDSFSKPHRPGQGPPKEAAFVDWLKETATSAALAPEERRRRLKEWEAEAPHGRNAHPREEHLLPLLVAQG 718
            KP+AI+V+SAH+E      +T+G K PL +DYYGFP   Y++ Y  PG+PALA +I + L  +GL AR +++RG+DHG F+PLKLMYP ADIP VQ+SL++++D E HL IG AL+TL  ++ +L++GSG + H   +F  P+ P      +A F DWL++T +S  ++  ER RRL +WE +APH R  HPREEHLLPL V  G
Sbjct:   41 KPSAILVISAHWE-ESVPTITSGAKPPLIYDYYGFPPESYEITYPCPGEPALARQIQQALEQAGLPARLDAQRGFDHGHFVPLKLMYPQADIPCVQLSLVNNMDAETHLAIGRALQTLKHDR-LLVIGSGFSFHNMRAFFGPNTPDIQAGNQA-FEDWLEQTCSSTEISETERGRRLAQWE-QAPHARFCHPREEHLLPLHVCYG 241
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1739.4871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRX5_ECTSI2.010e-14073.75LigB domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CEX8_9STRA7.900e-7047.96Catalytic LigB subunit of aromatic ring-opening di... [more]
A0A496XGL0_9GAMM1.270e-6150.00Dioxygenase n=1 Tax=Gammaproteobacteria bacterium ... [more]
A0A2M7G2W7_9BACT5.560e-6147.43Dioxygenase n=1 Tax=bacterium (Candidatus Blackall... [more]
A0A0H5QYQ3_9EUKA1.450e-6046.49LigB domain-containing protein (Fragment) n=1 Tax=... [more]
A0A522CMS9_9PROT1.720e-5946.25Dioxygenase n=1 Tax=Alphaproteobacteria bacterium ... [more]
A0A0G4J6W7_PLABS1.870e-5946.24LigB domain-containing protein n=1 Tax=Plasmodioph... [more]
A0A8K1CAG0_PYTOL2.250e-5945.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI0003FF6A3D3.690e-5949.13dioxygenase n=1 Tax=Desulfogranum japonicum TaxID=... [more]
UPI001EF8DF4C5.980e-5950.24dioxygenase n=1 Tax=Oceanisphaera litoralis TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1739contigL-elsbetiae_contig1739:4067..9029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score407.5
Seed ortholog evalue5.1e-111
Seed eggNOG ortholog2880.D8LRX5
KEGG rclassRC00387
KEGG koko:K15777
KEGG ReactionR08836
KEGG Pathwayko00965,map00965
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ferrous iron binding
EggNOG OGs2QS66@2759,COG3384@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionExtradiol ring-cleavage dioxygenase, class III enzyme, subunit B
Ec32 orthologEc-08_002800.1
Exons4
Model size920
Cds size858
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1739.4871.1prot_L-elsbetiae_contig1739.4871.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1739 4083..8983 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.5725353-UTR-L-elsbetiae_contig1739:4066..40821622815723.5725353-UTR-L-elsbetiae_contig1739:4066..4082Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1739 4067..4082 +
1691683060.7739692-UTR-L-elsbetiae_contig1739:4066..40821691683060.7739692-UTR-L-elsbetiae_contig1739:4066..4082Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1739 4067..4082 +
1622815723.6268256-UTR-L-elsbetiae_contig1739:8983..90291622815723.6268256-UTR-L-elsbetiae_contig1739:8983..9029Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1739 8984..9029 +
1691683060.8479831-UTR-L-elsbetiae_contig1739:8983..90291691683060.8479831-UTR-L-elsbetiae_contig1739:8983..9029Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1739 8984..9029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.5833206-CDS-L-elsbetiae_contig1739:4082..42971622815723.5833206-CDS-L-elsbetiae_contig1739:4082..4297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1739 4083..4297 +
1691683060.788534-CDS-L-elsbetiae_contig1739:4082..42971691683060.788534-CDS-L-elsbetiae_contig1739:4082..4297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1739 4083..4297 +
1622815723.593282-CDS-L-elsbetiae_contig1739:5203..53631622815723.593282-CDS-L-elsbetiae_contig1739:5203..5363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1739 5204..5363 +
1691683060.8031123-CDS-L-elsbetiae_contig1739:5203..53631691683060.8031123-CDS-L-elsbetiae_contig1739:5203..5363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1739 5204..5363 +
1622815723.604007-CDS-L-elsbetiae_contig1739:5771..58761622815723.604007-CDS-L-elsbetiae_contig1739:5771..5876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1739 5772..5876 +
1691683060.822764-CDS-L-elsbetiae_contig1739:5771..58761691683060.822764-CDS-L-elsbetiae_contig1739:5771..5876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1739 5772..5876 +
1622815723.614847-CDS-L-elsbetiae_contig1739:8605..89831622815723.614847-CDS-L-elsbetiae_contig1739:8605..8983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1739 8606..8983 +
1691683060.8361475-CDS-L-elsbetiae_contig1739:8605..89831691683060.8361475-CDS-L-elsbetiae_contig1739:8605..8983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1739 8606..8983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1739.4871.1

>prot_L-elsbetiae_contig1739.4871.1 ID=prot_L-elsbetiae_contig1739.4871.1|Name=mRNA_L-elsbetiae_contig1739.4871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=286bp
MKGGSGMMRPIDSTSPAAKWYRTFTHKWSKPAAIVVVSAHFEGRGTVEVT
TGEKHPLFFDYYGFPDYCYDLEYAPPGQPALANRIIELLRTSGLKARGNS
KRGYDHGVFIPLKLMYPGADIPVVQVSLLSSLDPEEHLKIGTALKTLAQE
QDVLIVGSGQATHGFDSFSKPHRPGQGPPKEAAFVDWLKETATSAALAPE
ERRRRLKEWEAEAPHGRNAHPREEHLLPLLVAQGCNGFRAGEVILDDWPA
GGMSLACVAFWSAGGERREEGGAAAAAAAGGVCTS*
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mRNA from alignment at L-elsbetiae_contig1739:4067..9029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1739.4871.1 ID=mRNA_L-elsbetiae_contig1739.4871.1|Name=mRNA_L-elsbetiae_contig1739.4871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4963bp|location=Sequence derived from alignment at L-elsbetiae_contig1739:4067..9029+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCCCCGCTTTCTTCATGAAAGGGGGTTCCGGAATGATGAGACCCATCG
ACTCCACGAGCCCCGCGGCGAAGTGGTACCGTACCTTCACCCACAAGTGG
TCCAAGCCGGCCGCCATCGTGGTGGTGTCGGCGCACTTCGAGGGACGAGG
CACCGTCGAGGTCACCACGGGCGAGAAACACCCGCTCTTCTTCGACTACT
ACGGCTTCCCCGACTACTGCTACGACCTCGAGTAAGTGGGCCCCGTGCAC
TGCTGTTGTGGCTGGCGTCGTCGGGTCTGTCGTCCATTACGTTTCGGTTG
TTGTTGTTGATGGTGTTGTTTTTGGTGCTATTTTGTTGTTGTCGTCGTGC
CGTCGTCGTCGGTTTTCTGGACCTTCTCCGACTTTTTCCTTTCGTGCTGC
ATTTACGCTTTTCTGGCTGGATATCGAATTGGTGTTGCCAGCAGGTGTAC
ATCAAGGTTTTTATCTTGCAAAACGCAGAAATGCGTGTGGGTATGAGGGA
GAATGGTGTGAACTTTCTCGTCCTAAGACGGCATTACAACGCTACAATAT
GTAGTAGCCATCATACCTGCGTATTTTTCTTTGCAAGTTTTGGCGCATTT
TTTTTGGACGCCTGGCCTCCTACGAAGACAAAAACGTAGTAAGAGCAACC
CCCCCTCCCACAAAGGCGCCCACGCGGCAGTGTAACGCTGTCGGCCTCTG
CAACTTGCACCCCCATCGGCGATACATCGGGTTATTTCGGAGCTGTCATC
CATACGCAGCAAAGTGCGCGCAAGCAACACGCCGAATTACCCCGTCCCGT
TCTATCTCAAAATAGTCATTACCCCGGAAGCGATTCTTGGCCCTTATACA
ACGATACATAAGGACGCCGCTATGCTTCCTGCAGCCCACCCACCATCTCA
CGACGCTTCGCGCTCGGTGCTTCGCGAGCCTGGCCCCAAGGGCGAAAACA
CAGAGAGCGTGTTCCGTTCGTTCCCTGAGAGCTTCGTTGCGAGGATGCGA
GGTCTATGGTTTTGTAGGACAAAATCCTAAATAGTTAGAAACGTTTGGGT
ATCCGTAAGAAAAGACAAAAGAAAATACGATGTGCGCGATAAATGAACAT
GCACCCCCCCCCCCCCCCTTGTGCCCACGTTTTCCAGGTACGCCCCCCCT
GGCCAGCCGGCTTTGGCGAACCGCATCATCGAGCTGCTCCGAACGAGCGG
ATTAAAGGCCCGGGGGAACAGCAAGCGCGGCTATGACCACGGCGTTTTCA
TCCCGCTCAAGCTCATGTATCCCGGGGCAGACATCCCTGTCGTCCAGGTG
ATTGCTGATTTCTACACGTGCACTCCATTCCATCTGCTGTACGCGTGTAT
GCACTACTGTTGCTGCTTTTTGTTTTATGGGATGTTCCAAGCACGACGAT
GATCCAGTGTTCTTGCGTGTCGGTGGCTGCTGCTGCTGCTGCTGTTACTG
CGCGTGAAATGGTGTGCATATGTAGCTTGTCTACCATTGGACCATGCAAA
CACGACTCCAAGCATTTGAGGTGATGGCTTCTGTATATAACCTCGACGAA
GGAACGAGAATTAATTATGTACCTGCACCCAGGGCGAGACGTAAACTCTG
TCGAATGGTTGCCCCCCCCCCCCCCCCCGCCCGCCCCGTGGACACACTCT
CTGAGACCCTCCCCGCCCCTTGTGCCTCGTGTGCGTGAACGCGTCGGAAG
TGCAGGTTTCTCTTCTGTCAAGCCTTGACCCGGAAGAGCACTTGAAGATC
GGAACGGCGCTCAAGACGCTAGCCCAAGAACAGGACGTGCTAATCGTCGG
TAGCGGCCAGGTGCGTGCGCGCGTGTGGACTATGGTTGATTCCAATTTGT
TCTTGTGTTTTTCCATCGAGAGTCAGAGGGGCGACCCGACCCTTACTCTT
GACTCTGGCAGGGCAGAGGGCTGGCAGGAGGGAAACACTTTACGGCAGCT
GTCCCCCTGTTTGTGATGTGCAAGCAAAAGCTGTGAAGAGTCCACACCCT
GTACAGCTATCGCTGATCGCTATCGCTGTTAGCTGTGTATAGCTGTCCAG
GGCTTGTAGCTGCACAGGATATTGAAACAATAGCTATGTACAGACAGCTA
GCTGCGCAGGATTTTGAAACAATAGCTGTCTGCAGACAGCTAGCTGCGCA
GCTTTTTGAAACATTACAAGGTTGTGTTCAGTATATTACTCGAGTATTTT
ACTATACTCTGCCAATAGTAGGTTAAGTACAGCTTTCGAGACTTTACTAA
GCCAATAGTACGCTTTAGCTCAGCCTTCGATACTGTACTATACTTCGGGT
TTAGTACCGGGTTCGGATCGATACTATACTCGGCTTAGTACAGTACTGCT
GAAGATACTGTACTATACTTTTGGGTTTAGTACAGCTCTCGATACTATAC
TACCCCAATAGTACGCTTTAGTACAACCGCCCGTACTGTACTATACTGCA
CGTTTAGTACAACTCCCGATACTATACTATCGCAATAGTAGCATTAGTAC
AGCTCCTGATACTATACTAAAACCAACAGTACGTCTAGTACAGCTCTCCA
TACTATAGTAAAGCCAACAGTAGGTTCAGTAGTACTATCAGTACTGCCCT
CTACCCAGATCTGCCCGGATTCCGGCCAAAGGGCGTGCTGATGACGTTAT
TCTTGCGCAGAAGCGGCGTGTTTTGGTTCTGTGCGTATGTGCGTCCACAC
AGAGTCCGCAGCAGCAGCACCACCAGTATCTTGGTGCTCTACTCAGGTAC
TCGAGCAATAGTAATAATATTTGTAGTAGTACCCGACAGGGGAGGTAGCA
GCCATGAGTGAGGCCGCTGGCAGTTCCCCTGCATCTCTCGATCCGGGTGC
GAATACAGCACAACCACTACAAGACGCTACGCAGGGAGTATAAGTATTAG
TTTGGTACTTTGCTTTTACTTTTGGTTTTGTTGCCCTCGGTGCTGCTGGA
AGTGAATTATCATGGCCGACACAAGAACCTCGAAAGGGACGGACGGGGCA
AGGAACACTGGCGGGATTGTGTTTCCATTCGTATTGTTTTCGGTCATTTT
GCTTCACTTGAACGCTTCTTTCATGTGTGCGTCCTGGTGCGCATTAATAT
GGGTCTCCACACTGCTGTACTGTCCCCATAGTCGAAAATATGCCGAAGTA
AAGCCCTCGATACTATAGTACGCTTTAGTACAGGTCTCGATATTGTACTA
TCCCAATAACTCTTTATGTAGTGCAGCTCTCGATACTGTACTATCCCAAT
AGTACGCTTTAGTAAAGCCCTCTAACTGTACTATAACCAATAGTAGGTTT
AGCACAGCTTTCGAGACTTTACTAAACCAATAGTACGCTTTAGTACAGCC
CTCGATACTGTACTATACTTCGGGTTCAGTACCGGGTTTTGATCGAACTA
TACTCGGCTTAGTACAGTACTGCTGAAGATACTGTACTATACTTTTGGGT
TTATTACAGCTCTCGATACTATACTACCCCAATAGTACGCTTGAGTACAC
CTCTCCGTACTGTACTATACTGCACGTTTAGTACAACTCCTGATACTATA
CCAAAGAGTACGTTTAGTACTGCAATCAATACTGTACTAAAAGTACTGTA
CTGCTGAACACAACGTTGAAACGTTAGCTGTCTGTAGACAGCTAGCTTAC
TTAACACAACCTTGAAACGTTAGCTGTCTGTAGACAGCTAGCTGCGCAAC
TTTTTGAAACAAGCTGTCTGCAGACAGCTAGCTGCGCAGGATTTGGAAAC
AGCTAGCTGCGCAGCTCCTTGGAACAAAAGCTGTCTACGAGACAGCTATA
GCTTAGCTGTCGGTAGAGCTATGGCTAATGAGAAAGTCGCGGGGTGAGCG
GTGTTGTTCATGGGTGTTCAGTGTTGTGATTTTTTTTTATTTCTGGGTGG
CGTCGACTCTTGCCGTGGAAATTCCCGTCAAATCGTGATACGTAGCAATA
TTGAAACAATTGCTGTCTGCAGACAGCTAGCTGCGCAGGATTCGGAAACA
ATAGCTGTCTGCCAGACAGCTGACCGCTATCGTAGCTGTACAGGGTGTGG
ACAGAGTCCCATCGAATAGACGCGAACAGCCGGGACTAGGACAGCAAGTT
GATGGCCATGCGTTTGGGAGCGCCCTCGGCCTCCAAACAAGGAGGTACAT
AGGTACAACAGACAACCTCTCAAAATCTGGTCCAGTTTCTCAGGTCATCC
TCGATTTGTTTTTTTTCTTGTTCACATTTATCTGCAGTGCTCGATGGGCT
GGCTCCCAATCACGAGGATATTTTGCCAGAGTACTGAACCGTGGTCACAC
AGAAGGGTTCCTTTGCCCTCGATACAGTAGAATTGTTTTTCGTTAAATAC
ATACACGCAATAGATGACCCAGGCCGTCCGCTCGGAAAGGGCCGCGGCCC
CTCCTAGTAATCCCCGAAAACAATCTACCCTTTTTACCTCCCGCACGCCG
GGCTTTCGGCTCTGCTCCCTTCTCACCCCCACCTCCCGGCCAAAAACCCA
CGGAAAAAAACAAAACAAAAAAACAATTGCCCTCAGCAGGCGACCCACGG
CTTCGACAGCTTCAGCAAACCGCACCGGCCGGGCCAGGGGCCGCCCAAGG
AAGCCGCGTTCGTCGACTGGCTCAAGGAGACCGCCACCTCCGCGGCCCTC
GCCCCGGAGGAGCGCCGGCGGCGCCTGAAGGAGTGGGAGGCCGAAGCCCC
CCACGGGAGAAACGCCCACCCCAGGGAGGAGCACCTCCTCCCGCTCCTGG
TGGCGCAGGGGTGCAACGGATTCCGGGCCGGAGAGGTCATCTTGGACGAT
TGGCCGGCGGGGGGCATGTCTCTCGCGTGCGTCGCGTTTTGGTCCGCGGG
CGGGGAGCGGCGGGAAGAAGGTGGTGCGGCGGCTGCTGCTGCGGCCGGCG
GTGTTTGCACGTCCTGATTCTGGGTTTTCTCGGGCTTTTTTTTTCCCCAA
GCGGCGGCGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1739:4067..9029+

>mRNA_L-elsbetiae_contig1739.4871.1 ID=mRNA_L-elsbetiae_contig1739.4871.1|Name=mRNA_L-elsbetiae_contig1739.4871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1716bp|location=Sequence derived from alignment at L-elsbetiae_contig1739:4067..9029+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGGGGGTTCCGGAATGATGAGACCCATCGACTCCACGAGCCCCGC
GGCGAAGTGGTACCGTACCTTCACCCACAAGTGGTCCAAGCCGGCCGCCA
TCGTGGTGGTGTCGGCGCACTTCGAGGGACGAGGCACCGTCGAGGTCACC
ACGGGCGAGAAACACCCGCTCTTCTTCGACTACTACGGCTTCCCCGACTA
CTGCTACGACCTCGAATGAAAGGGGGTTCCGGAATGATGAGACCCATCGA
CTCCACGAGCCCCGCGGCGAAGTGGTACCGTACCTTCACCCACAAGTGGT
CCAAGCCGGCCGCCATCGTGGTGGTGTCGGCGCACTTCGAGGGACGAGGC
ACCGTCGAGGTCACCACGGGCGAGAAACACCCGCTCTTCTTCGACTACTA
CGGCTTCCCCGACTACTGCTACGACCTCGAGTACGCCCCCCCTGGCCAGC
CGGCTTTGGCGAACCGCATCATCGAGCTGCTCCGAACGAGCGGATTAAAG
GCCCGGGGGAACAGCAAGCGCGGCTATGACCACGGCGTTTTCATCCCGCT
CAAGCTCATGTATCCCGGGGCAGACATCCCTGTCGTCCAGGTACGCCCCC
CCTGGCCAGCCGGCTTTGGCGAACCGCATCATCGAGCTGCTCCGAACGAG
CGGATTAAAGGCCCGGGGGAACAGCAAGCGCGGCTATGACCACGGCGTTT
TCATCCCGCTCAAGCTCATGTATCCCGGGGCAGACATCCCTGTCGTCCAG
GTTTCTCTTCTGTCAAGCCTTGACCCGGAAGAGCACTTGAAGATCGGAAC
GGCGCTCAAGACGCTAGCCCAAGAACAGGACGTGCTAATCGTCGGTAGCG
GCCAGGTTTCTCTTCTGTCAAGCCTTGACCCGGAAGAGCACTTGAAGATC
GGAACGGCGCTCAAGACGCTAGCCCAAGAACAGGACGTGCTAATCGTCGG
TAGCGGCCAGGCGACCCACGGCTTCGACAGCTTCAGCAAACCGCACCGGC
CGGGCCAGGGGCCGCCCAAGGAAGCCGCGTTCGTCGACTGGCTCAAGGAG
ACCGCCACCTCCGCGGCCCTCGCCCCGGAGGAGCGCCGGCGGCGCCTGAA
GGAGTGGGAGGCCGAAGCCCCCCACGGGAGAAACGCCCACCCCAGGGAGG
AGCACCTCCTCCCGCTCCTGGTGGCGCAGGGGTGCAACGGATTCCGGGCC
GGAGAGGTCATCTTGGACGATTGGCCGGCGGGGGGCATGTCTCTCGCGTG
CGTCGCGTTTTGGTCCGCGGGCGGGGAGCGGCGGGAAGAAGGTGGTGCGG
CGGCTGCTGCTGCGGCCGGCGGTGTTTGCACGTCCTGAGCGACCCACGGC
TTCGACAGCTTCAGCAAACCGCACCGGCCGGGCCAGGGGCCGCCCAAGGA
AGCCGCGTTCGTCGACTGGCTCAAGGAGACCGCCACCTCCGCGGCCCTCG
CCCCGGAGGAGCGCCGGCGGCGCCTGAAGGAGTGGGAGGCCGAAGCCCCC
CACGGGAGAAACGCCCACCCCAGGGAGGAGCACCTCCTCCCGCTCCTGGT
GGCGCAGGGGTGCAACGGATTCCGGGCCGGAGAGGTCATCTTGGACGATT
GGCCGGCGGGGGGCATGTCTCTCGCGTGCGTCGCGTTTTGGTCCGCGGGC
GGGGAGCGGCGGGAAGAAGGTGGTGCGGCGGCTGCTGCTGCGGCCGGCGG
TGTTTGCACGTCCTGA
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