mRNA_L-elsbetiae_contig17386.4869.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17386.4869.1
Unique NamemRNA_L-elsbetiae_contig17386.4869.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17386.4869.1 vs. uniprot
Match: A0A6H5JLY2_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY2_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 8.580e-11
Identity = 38/61 (62.30%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  175 EAMAGCSPASLSSPMSSGSGDGDG-ASSNGAFEPNLSLDKFMETLDALSPDGEQLHVHKRQ 354
            E M GCSPASL+SPMS G       A S GAFE N SLDKFME+L   SPDG+ LH+ KRQ
Sbjct:   17 EEMVGCSPASLNSPMSGGXXXXXXRARSGGAFESNYSLDKFMESLGTFSPDGQPLHLDKRQ 77
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BLAST of mRNA_L-elsbetiae_contig17386.4869.1 vs. uniprot
Match: D8LCS2_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS2_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 3.730e-7
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:  247 ASSNGAFEPNLSLDKFMETLDALSPDGEQLHVHKRQ 354
            ASS GAFEPN SLDKFME+L   SPDG+ LH+ KRQ
Sbjct:   12 ASSGGAFEPNYSLDKFMESLGTFSPDGQPLHLDKRQ 47
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17386.4869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLY2_9PHAE8.580e-1162.30MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LCS2_ECTSI3.730e-772.22Myb-like DNA-binding domain containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17386contigL-elsbetiae_contig17386:1416..1769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-03_001850.1
Exons1
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.4881346-CDS-L-elsbetiae_contig17386:1415..17691622815723.4881346-CDS-L-elsbetiae_contig17386:1415..1769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17386 1416..1769 +
1691683060.715206-CDS-L-elsbetiae_contig17386:1415..17691691683060.715206-CDS-L-elsbetiae_contig17386:1415..1769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17386 1416..1769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17386.4869.1prot_L-elsbetiae_contig17386.4869.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17386 1416..1769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17386.4869.1

>prot_L-elsbetiae_contig17386.4869.1 ID=prot_L-elsbetiae_contig17386.4869.1|Name=mRNA_L-elsbetiae_contig17386.4869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
PLEVVFRQVTTGRGALHGRDTSSLAEGRLLCSWKKKGQARMPNTGGENEG
TTAAPRAGEAMAGCSPASLSSPMSSGSGDGDGASSNGAFEPNLSLDKFME
TLDALSPDGEQLHVHKRQ
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mRNA from alignment at L-elsbetiae_contig17386:1416..1769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17386.4869.1 ID=mRNA_L-elsbetiae_contig17386.4869.1|Name=mRNA_L-elsbetiae_contig17386.4869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig17386:1416..1769+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTTGGAGGTTGTTTTCAGGCAGGTCACAACGGGACGGGGCGCATTGCA
TGGGCGTGATACATCAAGCTTGGCTGAGGGGAGACTGCTTTGTAGCTGGA
AAAAGAAGGGGCAGGCGAGGATGCCCAACACTGGCGGGGAAAACGAGGGA
ACAACGGCAGCCCCACGAGCAGGAGAGGCGATGGCCGGGTGCTCCCCGGC
TTCCTTGAGCTCACCCATGTCAAGCGGCAGCGGGGACGGCGACGGAGCGA
GCAGTAATGGGGCGTTCGAGCCGAACCTCTCCCTCGATAAGTTCATGGAG
ACGCTCGACGCCCTCTCTCCAGATGGCGAGCAGTTACACGTGCACAAACG
GCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17386:1416..1769+

>mRNA_L-elsbetiae_contig17386.4869.1 ID=mRNA_L-elsbetiae_contig17386.4869.1|Name=mRNA_L-elsbetiae_contig17386.4869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig17386:1416..1769+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTTGGAGGTTGTTTTCAGGCAGGTCACAACGGGACGGGGCGCATTGCA
TGGGCGTGATACATCAAGCTTGGCTGAGGGGAGACTGCTTTGTAGCTGGA
AAAAGAAGGGGCAGGCGAGGATGCCCAACACTGGCGGGGAAAACGAGGGA
ACAACGGCAGCCCCACGAGCAGGAGAGGCGATGGCCGGGTGCTCCCCGGC
TTCCTTGAGCTCACCCATGTCAAGCGGCAGCGGGGACGGCGACGGAGCGA
GCAGTAATGGGGCGTTCGAGCCGAACCTCTCCCTCGATAAGTTCATGGAG
ACGCTCGACGCCCTCTCTCCAGATGGCGAGCAGTTACACGTGCACAAACG
GCAGCCGTTGGAGGTTGTTTTCAGGCAGGTCACAACGGGACGGGGCGCAT
TGCATGGGCGTGATACATCAAGCTTGGCTGAGGGGAGACTGCTTTGTAGC
TGGAAAAAGAAGGGGCAGGCGAGGATGCCCAACACTGGCGGGGAAAACGA
GGGAACAACGGCAGCCCCACGAGCAGGAGAGGCGATGGCCGGGTGCTCCC
CGGCTTCCTTGAGCTCACCCATGTCAAGCGGCAGCGGGGACGGCGACGGA
GCGAGCAGTAATGGGGCGTTCGAGCCGAACCTCTCCCTCGATAAGTTCAT
GGAGACGCTCGACGCCCTCTCTCCAGATGGCGAGCAGTTACACGTGCACA
AACGGCAG
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