mRNA_L-elsbetiae_contig1737.4862.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1737.4862.1
Unique NamemRNA_L-elsbetiae_contig1737.4862.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1737.4862.1 vs. uniprot
Match: D7FI96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI96_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 8.960e-43
Identity = 68/105 (64.76%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:    1 ACSGPSPWRKCFSAAGISRPVLRPPKTSRARGDMPIRHLGSTGGYMIKGDPIYSLTANRHGLQVRFSNLESIEDFHPGMEKELDWDQATGDWVHVEIVTTFGKSM 315
            A SG +PWRKCF     SRP L  PK++RA            GGYM+KGDPIYSLTAN+HGL VRFSNLESIED+H G++  LDWD ATG+WVHVEI+TTFGKSM
Sbjct:   12 AFSGLNPWRKCFRGGVTSRPALELPKSTRA-----------PGGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSM 105
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BLAST of mRNA_L-elsbetiae_contig1737.4862.1 vs. uniprot
Match: D7G946_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G946_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 4.190e-31
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:  118 GSTGGYMIKGDPIYSLTANRHGLQVRFSNLESIEDFHPGMEKELDWDQATGDWVHVEIVTTFGKSM 315
            GS GGYM+KGDPIYSLTAN+HGL VRFSNLESIED+H G++  LDWD ATG+WVHVEI+TTFG+SM
Sbjct:  206 GSAGGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSM 271
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BLAST of mRNA_L-elsbetiae_contig1737.4862.1 vs. uniprot
Match: A0A6H5KQZ0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ0_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.550e-30
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:  118 GSTGGYMIKGDPIYSLTANRHGLQVRFSNLESIEDFHPGMEKELDWDQATGDWVHVEIVTTFGKSM 315
            GS GGYMIKGDPIYSLTAN+HGL VRFSNLESIED+H G++  LDWD ATG+WVHVEI+TTFG+SM
Sbjct:  249 GSAGGYMIKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSM 314
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BLAST of mRNA_L-elsbetiae_contig1737.4862.1 vs. uniprot
Match: A0A6H5JXY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY2_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 5.410e-30
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:  118 GSTGGYMIKGDPIYSLTANRHGLQVRFSNLESIEDFHPGMEKELDWDQATGDWVHVEIVTTFGKSM 315
            GS GGYMIKGDPIYSLTAN+HGL VRFSNLE+IED+H G++  LDWD  TG+WVHVEI+TTFGKSM
Sbjct:   73 GSAGGYMIKGDPIYSLTANKHGLHVRFSNLETIEDYHDGLDMPLDWDAVTGEWVHVEIITTFGKSM 138
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BLAST of mRNA_L-elsbetiae_contig1737.4862.1 vs. uniprot
Match: A0A6H5JBB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB3_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 6.160e-30
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:  118 GSTGGYMIKGDPIYSLTANRHGLQVRFSNLESIEDFHPGMEKELDWDQATGDWVHVEIVTTFGKSM 315
            GS GGYMIKGDPIYSLTAN+HGL VRFSNLE+IED+H G++  LDWD  TG+WVHVEI+TTFGKSM
Sbjct:  147 GSAGGYMIKGDPIYSLTANKHGLHVRFSNLETIEDYHDGLDMPLDWDAVTGEWVHVEIITTFGKSM 212
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BLAST of mRNA_L-elsbetiae_contig1737.4862.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 2.290e-26
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:  136 MIKGDPIYSLTANRHGLQVRFSNLESIEDFHPGMEKELDWDQATGDWVHVEIVTTFGKSM 315
            M+KGDPIYSLTAN+HGL VRFSNLESIED+H G++  LDWD ATG+WVHVEI+TTFG+SM
Sbjct:    1 MVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSM 60
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BLAST of mRNA_L-elsbetiae_contig1737.4862.1 vs. uniprot
Match: D8LDH3_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH3_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.830e-17
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:  118 GSTGGYMIKGDPIYSLTANRHGLQVRFSNLESIEDFHPGMEKELDWDQATGDWVHVEIVTTFGKSM 315
            G +GG+ +KG+P++S+TAN +G+ VRF+N ES  D   GM+  L W+ ATG+WVHVEI TTFGKSM
Sbjct:  150 GVSGGFQLKGNPLFSVTANNNGINVRFNNEES--DKVEGMDDTLSWEDATGEWVHVEIRTTFGKSM 213
[Close]
BLAST of mRNA_L-elsbetiae_contig1737.4862.1 vs. uniprot
Match: A0A6H5K5S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.200e-11
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:  112 HLGS-----TGGYMIKGDPIYSLTANRHGLQVRFSNLE-SIEDFHPGMEKELDWDQATGDWVHVEIVTTFGKSM 315
            H+G       GG  + GDPI S++AN  GL VRFSN++ +I D++       +W+ ATG+WVHV I T FG+ M
Sbjct:  183 HIGQIKGAYNGGQTVDGDPIVSISANLDGLHVRFSNIDKTIPDYYTHDSWYRNWEDATGEWVHVTIDTVFGEFM 256
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1737.4862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FI96_ECTSI8.960e-4364.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G946_ECTSI4.190e-3178.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQZ0_9PHAE2.550e-3080.30WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JXY2_9PHAE5.410e-3078.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBB3_9PHAE6.160e-3078.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDH2_ECTSI2.290e-2678.33WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDH3_ECTSI4.830e-1757.58WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5S3_9PHAE5.200e-1144.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1737contigL-elsbetiae_contig1737:16620..17805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue6.1e-22
Seed eggNOG ortholog2880.D8LDH2
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000750.1
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.0462046-CDS-L-elsbetiae_contig1737:16619..168171622815723.0462046-CDS-L-elsbetiae_contig1737:16619..16817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1737 16620..16817 -
1691683060.4309864-CDS-L-elsbetiae_contig1737:16619..168171691683060.4309864-CDS-L-elsbetiae_contig1737:16619..16817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1737 16620..16817 -
1622815723.0623982-CDS-L-elsbetiae_contig1737:17688..178051622815723.0623982-CDS-L-elsbetiae_contig1737:17688..17805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1737 17689..17805 -
1691683060.4419699-CDS-L-elsbetiae_contig1737:17688..178051691683060.4419699-CDS-L-elsbetiae_contig1737:17688..17805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1737 17689..17805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1737.4862.1prot_L-elsbetiae_contig1737.4862.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1737 16620..17805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1737.4862.1

>prot_L-elsbetiae_contig1737.4862.1 ID=prot_L-elsbetiae_contig1737.4862.1|Name=mRNA_L-elsbetiae_contig1737.4862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
ACSGPSPWRKCFSAAGISRPVLRPPKTSRARGDMPIRHLGSTGGYMIKGD
PIYSLTANRHGLQVRFSNLESIEDFHPGMEKELDWDQATGDWVHVEIVTT
FGKSM
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mRNA from alignment at L-elsbetiae_contig1737:16620..17805-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1737.4862.1 ID=mRNA_L-elsbetiae_contig1737.4862.1|Name=mRNA_L-elsbetiae_contig1737.4862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1186bp|location=Sequence derived from alignment at L-elsbetiae_contig1737:16620..17805- (Laminarionema elsbetiae ELsaHSoW15)
GCGTGTTCGGGCCCGAGTCCCTGGAGGAAGTGTTTCAGCGCGGCGGGGAT
TTCACGACCTGTCCTACGGCCACCAAAGACAAGCCGTGCTCGAGGTGATA
TGCCAATTCGTCATCTCGTAAATTCGCAGGGTTTTTAGCTCTTGGAGGCC
GCCGAGCCCGGCGTCTTTGGTCCCAAAATCTTGTACATAGCCCGCACCTT
GTATCCTTTCGAGTGGACTGCTTTTCGGAGTCGTCCTATTCATAGGGAAA
TTATTTTGCTTTCTACATACGAAGTACTTCGAAGTATATTACTCTAAAAC
GAATGATCGGCATCAAGTGTTTGGTCTACTACTGTTTTGCGTTGCAGGCG
AGTCGGCGCTTCCTTTCGTCTGTGACGCACGACTTTAGCGCTATGTACCC
AAACAAGACACCTTACTAAGAAGTCTCGCACGCCCCACGTAGTTATTCCC
TTCGGCGAGCTTTGATTTTTTTTCGAAAACAATAGCGTTGTCAAAAAGGA
TGAGAAGCTGCTGCGCGGGCGCAAGACTACTGCGCGTGGGAAGACGGACT
GAAAACAACAAATTAAACCAGGATCTCTCTATAAAAACCTCCGAGCGCGC
GTGTTTCGAGCAGTCAGTCTCTCCCCCGCCCAAAGAGCTGCTCGCGTGTC
GCCCGCGCACTGCATGCAAACCTAACCCCACGAAACGCTGTACATTAATG
AACACGGCTTCAACATCGAGTCTACATATGCTTGTATTACCTCGATCCTC
AAACGAGGCGGGATAATGAAATGCGCACTCTTTCGGTGTACCTCGTGTCA
TTATTGGTGCTGCCATTTGAATCAGGTTCATCGTTGACAAGGACGAGGAG
CGTTCGGAGGTCAAGGTGCAGGAGGGGCCCGACGGATTTCCCTTCCTCTT
CGGCGAGACGTACACCTTCAAGTACAGCTTCAAAGCAGTGGATGAGATGA
AAGTGGCCACGCGGTTCACCCACCTCGGCCAGCTCAAGGGCTCCACCGGC
GGCTACATGATCAAGGGAGACCCGATCTACTCCCTCACCGCCAACAGGCA
CGGCCTGCAGGTCCGCTTCAGCAACCTGGAATCGATCGAGGATTTCCACC
CCGGCATGGAGAAAGAGCTCGATTGGGACCAAGCCACGGGGGACTGGGTG
CATGTGGAAATCGTCACCACGTTTGGAAAGAGCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1737:16620..17805-

>mRNA_L-elsbetiae_contig1737.4862.1 ID=mRNA_L-elsbetiae_contig1737.4862.1|Name=mRNA_L-elsbetiae_contig1737.4862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig1737:16620..17805- (Laminarionema elsbetiae ELsaHSoW15)
GCGTGTTCGGGCCCGAGTCCCTGGAGGAAGTGTTTCAGCGCGGCGGGGAT
TTCACGACCTGTCCTACGGCCACCAAAGACAAGCCGTGCTCGAGGTGATA
TGCCAATTCGTCATCTCGCGTGTTCGGGCCCGAGTCCCTGGAGGAAGTGT
TTCAGCGCGGCGGGGATTTCACGACCTGTCCTACGGCCACCAAAGACAAG
CCGTGCTCGAGGTGATATGCCAATTCGTCATCTCGGCTCCACCGGCGGCT
ACATGATCAAGGGAGACCCGATCTACTCCCTCACCGCCAACAGGCACGGC
CTGCAGGTCCGCTTCAGCAACCTGGAATCGATCGAGGATTTCCACCCCGG
CATGGAGAAAGAGCTCGATTGGGACCAAGCCACGGGGGACTGGGTGCATG
TGGAAATCGTCACCACGTTTGGAAAGAGCATGGGCTCCACCGGCGGCTAC
ATGATCAAGGGAGACCCGATCTACTCCCTCACCGCCAACAGGCACGGCCT
GCAGGTCCGCTTCAGCAACCTGGAATCGATCGAGGATTTCCACCCCGGCA
TGGAGAAAGAGCTCGATTGGGACCAAGCCACGGGGGACTGGGTGCATGTG
GAAATCGTCACCACGTTTGGAAAGAGCATG
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