mRNA_L-elsbetiae_contig1736.4857.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1736.4857.1 vs. uniprot
Match: D8LSI7_ECTSI (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI7_ECTSI) HSP 1 Score: 512 bits (1318), Expect = 4.820e-165 Identity = 496/943 (52.60%), Postives = 516/943 (54.72%), Query Frame = 1 Query: 1 MHEPRVFQHPTSVTEIRQLWRDICEGELLLLVTRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAADAQETEVVPGPLWERGGSGA-GGVDWGRQRGGGXXXXXXXXXXXXDVT---ISSSAHG-DEWDAGDGTVALRHLQNLAVQLPYKSWQVLCLLLEFLAQVAALSNVNEMTSEVLSQQTFAPLLCRPRGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRSASNHTSTGSKALVAGQSKGGGKEGLSLTLSAGGRRPSSNDLYIVQQLINDSVSLLVYAGSEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXARGRKAPGELFDGHQVGRLKSFLRPHMLHAPPPAVGHFGPPSLSSITSGGDAGGSAYLRKHSFFDLDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSAAAKHKPAAAVETAENGXXXXXXXXXXXXXXXXXXXXXXXAGNSGTEAPGTVKAWAGAGGADPMARGGKTSVAGSLERRRMMLACRTLRAQINHYEVNFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQSTFRGYRERKRHPEVPRLLRNEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGVGAERAPAAATTVSASVGVPAAIKADGAAVAGAGGLGALGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSSAAAGVGAVAAAXATGGEVVATAESGV----------------------------------EEEARASLAGKLKDLLEEKRGIKAQLKSFDMTFFRRTGRLPTKAEKEPMRHLYDRYNGLKHQIRDVEGLLATHRQ 2712 MHEPRVFQHPTS+TEIRQLWRD+CE VPGPLWERG SG GG+ WGRQRG XXXXXX XXXXX +SSS G EWDA GTVALRHLQ LAVQLP+KSWQVLCLLLEFLAQVAALSNVNEMTSEVLSQ TFAPLLCRP+GSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNR+ASNH S GSKALVAGQ+KGGGKEGL+LTLSAGGRRPSSNDLYIVQQL+NDSVSLLVYAGSEGEE XXXXXXXXXXXXXX A R+ GELF G Q + A G G +GGDA W G GADP RGG+ SVAGSLERRRMMLACRTLRAQI+HYEVNFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQ+T+RGYRERKRHPEVPRLLR EAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RS+ AAG A + A V T + EEE R SL GKLKDLLEEKRGIK QLKSFDMTFFRRTGRLPTKAEKEPMRHLYDRYNGLKHQIRDVEGLL HRQ Sbjct: 1 MHEPRVFQHPTSLTEIRQLWRDVCEE------------------------------------------------------------------------------------------------VPGPLWERGASGDDGGLGWGRQRGXXXXXXXXVXXXXXXXXXXLVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSWQVLCLLLEFLAQVAALSNVNEMTSEVLSQ-TFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNASNHASAGSKALVAGQAKGGGKEGLALTLSAGGRRPSSNDLYIVQQLMNDSVSLLVYAGSEGEEDGEEXXXXXXXXXXXXXX--------AGRRRGHGELFGGPQAAKA--------------AAGTVG-------RTGGDA------------------------------------------------------------------------------------------------------------------------------------------------WGGGAGADPTGRGGRRSVAGSLERRRMMLACRTLRAQIDHYEVNFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQATYRGYRERKRHPEVPRLLRKEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLGVSSPPRSALAAGFPASGVSPAPLSPVSGTGSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEVRVSLTGKLKDLLEEKRGIKGQLKSFDMTFFRRTGRLPTKAEKEPMRHLYDRYNGLKHQIRDVEGLLVAHRQ 638
BLAST of mRNA_L-elsbetiae_contig1736.4857.1 vs. uniprot
Match: A0A6H5K490_9PHAE (Rho-GAP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K490_9PHAE) HSP 1 Score: 517 bits (1331), Expect = 7.830e-164 Identity = 468/763 (61.34%), Postives = 500/763 (65.53%), Query Frame = 1 Query: 487 ISSSAHG-DEWDAGDGTVALRHLQNLAVQLPYKSWQVLCLLLEFLAQVAALSNVNEMTSEVLSQQTFAPLLCRPRGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRSASNHTSTGSKALVAGQSKGGGKEGLSLTLSAGGRRPSSNDLYIVQQLINDSVSLLVYAGSEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXARGRKAPGELFDGHQVGRLKSFLRPHMLHAPPPAV--GHFGPPSLSSITSGGDAGGSAYLRKHSFFDLDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSAAAKHKP---AAAVETAENGXXXXXXXXXXXXXXXXXXXXXXXAGNSGTEAPGTVKAWAGAGGADPMARGGKTSVAGSLERRRMMLACRTLRAQINHYEVNFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQSTFRGYRERKRHPEVPRLLRNEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGVGAERAPAAATTVSAS-----------VGVPAAIKADGA-AVAGAG----GLGALGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSSAAAGVGAVAAAXATGGEVVATAESGV----------------------------------EEEARASLAGKLKDLLEEKRGIKAQLKSFDMTFFRRTGRL 2607 +SSS G EWDA GTVALRHLQ LAVQLP+KSW+VL LLLEFLAQVAALSNVNEMTSEVLSQ TFAPLLCRP+GSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNR+ASNH S GSKALVAGQ+KGGGK+GL+LTLSAGGRRPSSNDLYIVQQL+NDSVSLLVYAGSEGEE XXXX A R+ GELF Q GRL+SFLRPHMLHAPPPAV HFGPPSLSS +GGD GG AYLRKHSFFDLDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A KP A+ V +NG +GT AW G G +P RGG+ SVAGSLERRR++LACRTLRAQI+HYE+NFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQ+T+RGYRERKRHPEVPRLLR EAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AG R+P + S S + +KADG V G+G G G LG+S RS+ AAG A + A V T + EEE R SL GKLKDLLEEKRGIK QLKSFDMTFFRRTGRL Sbjct: 276 VSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSWEVLYLLLEFLAQVAALSNVNEMTSEVLSQ-TFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNASNHASAGSKALVAGQAKGGGKDGLALTLSAGGRRPSSNDLYIVQQLMNDSVSLLVYAGSEGEEDGEESDGSGXXXXDG-----------AGRRRGHGELFGWPQAGRLRSFLRPHMLHAPPPAVTAAHFGPPSLSS--AGGDTGGPAYLRKHSFFDLDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASCRSP-----------GGAADKPVDAASGVVVTDNGSKATPAVDEAAKAA------------AGTVGRSGGSAWGGGAGDNPTGRGGR-SVAGSLERRRILLACRTLRAQIDHYEMNFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQATYRGYRERKRHPEVPRLLRKEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-------------AGTTAGVRSPTSEGRTSPSQTXXXXXXXXXXXXXSTVKADGFFVVTGSGSATVGGGVLGVSSPP------------------------------------RSTLAAGFPAPGVSPAPLSPVSVTGSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEVRVSLTGKLKDLLEEKRGIKGQLKSFDMTFFRRTGRL 951
BLAST of mRNA_L-elsbetiae_contig1736.4857.1 vs. uniprot
Match: A0A6H5K4W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W5_9PHAE) HSP 1 Score: 165 bits (417), Expect = 8.990e-41 Identity = 91/110 (82.73%), Postives = 94/110 (85.45%), Query Frame = 1 Query: 2479 SGVEEEARASLAGKLKDLLEEKRGIKAQLKSFDMTFFRRTGRLPTKAEKEPMRHLYDRYNGLKHQIRDVEGLLATHRQQHSPQLQYTPPQSPYTASPRGVWAE-PGPNTT 2805 S EE+ R SL GKLKDLL EK GIK QLKSFDMTF RRTGRLPTKAEKEPMRHLY RY+GLKHQIRDVEGLL HRQQHSPQLQYTPPQSPYTASPRGV AE PG + T Sbjct: 79 SAAEEKVRISLTGKLKDLL-EKGGIKGQLKSFDMTFSRRTGRLPTKAEKEPMRHLYGRYDGLKHQIRDVEGLLVAHRQQHSPQLQYTPPQSPYTASPRGVRAEQPGSSAT 187
BLAST of mRNA_L-elsbetiae_contig1736.4857.1 vs. uniprot
Match: A0A7R9U7W0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7W0_9STRA) HSP 1 Score: 100 bits (250), Expect = 2.000e-18 Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 1 Query: 1711 GKTSVAGSLERRRMMLACRTLRAQINHYEVNFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQSTFRGYRERK 1953 G VAGSLERRRM+ ACR LR QI +E F +GHPP+G ERAPL STYAQY+SWK+FIR+DA+ +Q FR +R +K Sbjct: 254 GPRRVAGSLERRRMVQACRVLRTQITKFEERFAETHGHPPKGAERAPLGSTYAQYRSWKRFIREDAAQHIQRCFREHRRKK 334
BLAST of mRNA_L-elsbetiae_contig1736.4857.1 vs. uniprot
Match: A0A7S2BLF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLF6_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.400e-14 Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 1 Query: 1732 SLERRRMMLACRTLRAQINHYEVNFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQSTFRGYRERKRHPEVP 1971 S ERRRM+LAC+TLR QI +E + G P+GRER PL +TYAQY+ WK+ IRDDA+ +LQ+ +RG+R R R + P Sbjct: 282 SCERRRMVLACKTLRLQIRQFEEAHMKQLGRLPKGRERQPLATTYAQYREWKKNIRDDAAGRLQALYRGWRCRTRRYQGP 361
BLAST of mRNA_L-elsbetiae_contig1736.4857.1 vs. uniprot
Match: A0A7S1VBR6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VBR6_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 2.620e-13 Identity = 96/335 (28.66%), Postives = 137/335 (40.90%), Query Frame = 1 Query: 1738 ERRRMMLACRTLRAQINHYEVNFQAEYGHPPRGR-ERAPLVSTYAQYKSWKQFIRDDASTQLQSTFRGYRER-----KRHPEVPRLLRNEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGVGAERAPAAATTVSASVGVPAAIKADGAAVAGAGGLGALGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSSAAAGVGAVAAAXATGGEVVATAESGVEEEARASLAG-KLKDLLEEKRGIKAQLKSFDMTFFRRTGRLPTKAEKEPMRHLYDRYNGLKHQI--RDVEGLLATHRQQ 2715 ER+R + ACR LR+QI +E F +G PP+G ERAPL +TYAQY+ WK+ IR DA+ ++Q+ FRG R R +PE+ R+++ +AP ++S I D ++V GA+GLS R S ++ + A AT+ ++ A LA L +L KR +K QLK +DM F R+ GR+P KAEKEP+RHLY++YN LK QI R+ EG ++ QQ Sbjct: 824 ERKRTVAACRALRSQIQRFEDAFAQLHGRPPKGAAERAPLATTYAQYREWKRAIRADAACRIQALFRGARTRWMLLRSGNPEMIRVVK--------------------------------------------------------------KAPLRRQKPASSDRPDLLIPIDPSSV------GAVGLSPLPSGLQTPTASGLGDSSPADVFGSSATSGTPPFSSAPRRLSGSSDLSASPTPP------YATSSPTSPQDIHAELAAMSLPELQARKRDLKQQLKQYDMNFARQHGRMPVKAEKEPIRHLYEQYNALKGQISQREQEGSSSSTMQQ 1084
BLAST of mRNA_L-elsbetiae_contig1736.4857.1 vs. uniprot
Match: A0A7S2RA23_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA23_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 9.880e-13 Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 1 Query: 1723 VAGSLERRRMML-ACRTLRAQINHYEVNFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQSTFRG--YRERKRHPEVPR 1974 V GS ++RR +L ACR LRAQ+ +E + GHPPRGRER PL+STYAQY+ WK+ IRD A+ +LQ+ RG YR R + PR Sbjct: 261 VMGSPQQRRQLLHACRCLRAQVKRFEEDHCQRTGHPPRGRERGPLLSTYAQYREWKKNIRDYAACRLQALVRGLLYRARMQRSSEPR 347
BLAST of mRNA_L-elsbetiae_contig1736.4857.1 vs. uniprot
Match: A0A7S1FMW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMW6_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.610e-12 Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 1 Query: 1729 GSLERRRMMLACRTLRAQINHYEVNFQAEYGH-PPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQSTFRGYRER 1950 GS+ER+RM+ ACR LRAQI +E +F YG+ P + ERAPL STYAQY WK+ IR DA+ ++Q FRG R R Sbjct: 554 GSVERKRMVAACRALRAQITQFEAHFTTAYGYRPKKAAERAPLASTYAQYLEWKRAIRTDAAVRIQCLFRGARVR 628
BLAST of mRNA_L-elsbetiae_contig1736.4857.1 vs. uniprot
Match: A0A7S3YC39_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YC39_HETAK) HSP 1 Score: 73.2 bits (178), Expect = 6.540e-12 Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 2500 RASLAGKLKDLLEEKRGIKAQLKSFDMTFFRRTGRLPTKAEKEPMRHLYDRYNGLKHQIRDVEGLL 2697 ++ L L+ L+EEKRGIK QLK FD+ F + GR+P+KAEKEP+RHLY+RYN K +IR E + Sbjct: 21 QSGLGQALEVLMEEKRGIKEQLKQFDLRFLQERGRMPSKAEKEPIRHLYERYNATKSRIRRTEAAM 86
BLAST of mRNA_L-elsbetiae_contig1736.4857.1 vs. uniprot
Match: A0A7S3DR27_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DR27_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.090e-11 Identity = 99/352 (28.12%), Postives = 138/352 (39.20%), Query Frame = 1 Query: 1639 SGTEAPGTVKAWAGAGGADPMARGGKTSVAGSLERRRMMLACRTLRAQINHYEVNFQAEYGHPPRGR-ERAPLVSTYAQYKSWKQFIRDDASTQLQSTFRGYRERKRHPEVPRLLRNEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGVGAERAPAAATTVSASVGVPAAIKADGAAVAGAGGLGALGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSSAAAGVGAVAAAXATGGEVVATAESGVEEEARASLAGK-LKDLLEEKRGIKAQLKSFDMTFFRRTGRLPTKAEKEPMRHLYDRYNGLKHQIRDVE 2688 SGT + G A + + GA P ++ +T + + ER+R + ACR LRAQI +E F +G PP+G ERAPL +TYAQY+ WK+ IR DA+ ++Q+ RG R R LLR+ V RA ++ ++ V I + G+GA A+ S++ G+ + T A AG L +L KR +K QLK +DM FFRR GR+P KAEKEP+RHLY+ YN LK QI +E Sbjct: 16 SGTPSSGLASASSSSPGAPPTSQY-RTLTSTAAERKRTVAACRALRAQIQRFEDAFVQLHGRPPKGAAERAPLATTYAQYREWKRAIRADAACRIQALLRGARTRLI------LLRSGDSDVTH--------------------------------------------------VVLRRAGRPGSSPDLAIPVDIGISESDHGI----GIGASSSIDSGISRPSNSSVSASWSSRPQIRSRLSNGEDRAADFANAQLSSSNSGGSARPSPPT---------------LYAEFAGMTLNELQARKRDLKKQLKQYDMNFFRRHGRMPVKAEKEPIRHLYESYNNLKVQITHME 291 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1736.4857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1736.4857.1 >prot_L-elsbetiae_contig1736.4857.1 ID=prot_L-elsbetiae_contig1736.4857.1|Name=mRNA_L-elsbetiae_contig1736.4857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1053bp MHEPRVFQHPTSVTEIRQLWRDICEGELLLLVTRYGGGGAVPAGGAEGGLback to top mRNA from alignment at L-elsbetiae_contig1736:4315..17716+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1736.4857.1 ID=mRNA_L-elsbetiae_contig1736.4857.1|Name=mRNA_L-elsbetiae_contig1736.4857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=13402bp|location=Sequence derived from alignment at L-elsbetiae_contig1736:4315..17716+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1736:4315..17716+ >mRNA_L-elsbetiae_contig1736.4857.1 ID=mRNA_L-elsbetiae_contig1736.4857.1|Name=mRNA_L-elsbetiae_contig1736.4857.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6318bp|location=Sequence derived from alignment at L-elsbetiae_contig1736:4315..17716+ (Laminarionema elsbetiae ELsaHSoW15)back to top |