mRNA_L-elsbetiae_contig17349.4855.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17349.4855.1
Unique NamemRNA_L-elsbetiae_contig17349.4855.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17349.4855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17349contigL-elsbetiae_contig17349:1417..2587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size1171
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17349.4855.1prot_L-elsbetiae_contig17349.4855.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17349 1881..2555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.549682-UTR-L-elsbetiae_contig17349:1416..18801622815722.549682-UTR-L-elsbetiae_contig17349:1416..1880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17349 1417..1880 +
1691683060.1229436-UTR-L-elsbetiae_contig17349:1416..18801691683060.1229436-UTR-L-elsbetiae_contig17349:1416..1880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17349 1417..1880 +
1622815722.5739877-UTR-L-elsbetiae_contig17349:2555..25871622815722.5739877-UTR-L-elsbetiae_contig17349:2555..2587Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17349 2556..2587 +
1691683060.142769-UTR-L-elsbetiae_contig17349:2555..25871691683060.142769-UTR-L-elsbetiae_contig17349:2555..2587Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17349 2556..2587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.561824-CDS-L-elsbetiae_contig17349:1880..25551622815722.561824-CDS-L-elsbetiae_contig17349:1880..2555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17349 1881..2555 +
1691683060.133613-CDS-L-elsbetiae_contig17349:1880..25551691683060.133613-CDS-L-elsbetiae_contig17349:1880..2555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17349 1881..2555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17349.4855.1

>prot_L-elsbetiae_contig17349.4855.1 ID=prot_L-elsbetiae_contig17349.4855.1|Name=mRNA_L-elsbetiae_contig17349.4855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
MVKLCGVRPSVRLSVFFSFFLLVPRLFPVCSMGSLPRGHLACRVLNRGWS
HRRVSFPQGRPAPTAVLALIFFCFFLSCLLPCLLAKKRMGSQAASSLGRR
SERGESTRGGVLAFRLASADRSCLLVYNQFARQRELGLVVRQNNKSVLLL
LLWGVVALPAAVPRTMGAALLCRVLGLGMRRQQTERWCLPERVFAARVCA
DRVCAAHAFAARACACACARAHSA*
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mRNA from alignment at L-elsbetiae_contig17349:1417..2587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17349.4855.1 ID=mRNA_L-elsbetiae_contig17349.4855.1|Name=mRNA_L-elsbetiae_contig17349.4855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1171bp|location=Sequence derived from alignment at L-elsbetiae_contig17349:1417..2587+ (Laminarionema elsbetiae ELsaHSoW15)
CACGAGTGCTATCGAACCGAAGCTTTCCCAACCACTGTTTGTTCTTGGTG
CTTGCCGCGTATCGTCGTTGTCCTGAACATTCTTGGTGACGAGAAGGACA
CATGTATGTGTGACCCCGGTTTGGATCGTCTAGCTAGTTCATCGTAGTGG
AGGATGGGGCCAGTGGGGGCAGACGACGAGTAAGCCAGTATCTAATGGGG
GGATAAAAAATAATAATACATAGTATCAGCGCAACGTTGTGTGTCTGTGC
CACGACACACATTTTGTTTGATGCTGATGCTTTGTAGGCAACTACTTCTA
ACTGCCTGCATACCGGAGTCGGTGTGCATCGTCAGGAGTGAGGCTCTTTC
GTTTGATTGTGTAGTCTTCGTTCTCGCTTGGGAGGTAGGTGGGCAGACCC
CGCATTACCTGAACTTGGTTTAACAACGACGGTACAGTAAGGGAGTTAGG
TGACTTTTGACACCATGGTAAAATTGTGTGGCGTCCGTCCGTCCGTCCGT
CTGTCTGTTTTTTTTTCTTTTTTTCTTCTTGTTCCACGCTTATTTCCAGT
GTGCTCGATGGGCTCCTTGCCACGAGGGCATCTTGCCTGCAGAGTACTGA
ACCGTGGTTGGTCGCACAGAAGGGTTTCCTTTCCCCAAGGCCGGCCGGCT
CCCACTGCGGTTCTGGCCTTAATTTTTTTTTGTTTTTTTTTGTCTTGTCT
TTTACCTTGTTTGCTTGCCAAAAAACGGATGGGATCGCAAGCCGCATCGA
GCTTGGGGAGAAGAAGCGAGAGAGGAGAGAGTACACGAGGAGGCGTTTTG
GCGTTTCGGTTGGCGTCTGCCGATCGATCATGCTTGCTTGTGTACAATCA
ATTCGCACGGCAGAGGGAGTTGGGGTTGGTTGTACGGCAAAACAACAAAT
CCGTCTTGTTGCTGCTGCTTTGGGGGGTCGTAGCGCTGCCTGCTGCTGTA
CCGCGAACGATGGGCGCCGCGCTCTTGTGCCGAGTGTTGGGGTTGGGGAT
GAGGAGGCAACAAACAGAGCGGTGGTGTCTTCCCGAGCGTGTGTTTGCTG
CGCGTGTGTGTGCTGATCGTGTGTGTGCTGCGCATGCGTTCGCTGCGCGT
GCCTGCGCCTGTGCCTGTGCGCGTGCGCACTCCGCTTGATGTAGATACAT
AGCACACACCGTCTGAGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17349:1417..2587+

>mRNA_L-elsbetiae_contig17349.4855.1 ID=mRNA_L-elsbetiae_contig17349.4855.1|Name=mRNA_L-elsbetiae_contig17349.4855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig17349:1417..2587+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAAAATTGTGTGGCGTCCGTCCGTCCGTCCGTCTGTCTGTTTTTTT
TTCTTTTTTTCTTCTTGTTCCACGCTTATTTCCAGTGTGCTCGATGGGCT
CCTTGCCACGAGGGCATCTTGCCTGCAGAGTACTGAACCGTGGTTGGTCG
CACAGAAGGGTTTCCTTTCCCCAAGGCCGGCCGGCTCCCACTGCGGTTCT
GGCCTTAATTTTTTTTTGTTTTTTTTTGTCTTGTCTTTTACCTTGTTTGC
TTGCCAAAAAACGGATGGGATCGCAAGCCGCATCGAGCTTGGGGAGAAGA
AGCGAGAGAGGAGAGAGTACACGAGGAGGCGTTTTGGCGTTTCGGTTGGC
GTCTGCCGATCGATCATGCTTGCTTGTGTACAATCAATTCGCACGGCAGA
GGGAGTTGGGGTTGGTTGTACGGCAAAACAACAAATCCGTCTTGTTGCTG
CTGCTTTGGGGGGTCGTAGCGCTGCCTGCTGCTGTACCGCGAACGATGGG
CGCCGCGCTCTTGTGCCGAGTGTTGGGGTTGGGGATGAGGAGGCAACAAA
CAGAGCGGTGGTGTCTTCCCGAGCGTGTGTTTGCTGCGCGTGTGTGTGCT
GATCGTGTGTGTGCTGCGCATGCGTTCGCTGCGCGTGCCTGCGCCTGTGC
CTGTGCGCGTGCGCACTCCGCTTGAATGGTAAAATTGTGTGGCGTCCGTC
CGTCCGTCCGTCTGTCTGTTTTTTTTTCTTTTTTTCTTCTTGTTCCACGC
TTATTTCCAGTGTGCTCGATGGGCTCCTTGCCACGAGGGCATCTTGCCTG
CAGAGTACTGAACCGTGGTTGGTCGCACAGAAGGGTTTCCTTTCCCCAAG
GCCGGCCGGCTCCCACTGCGGTTCTGGCCTTAATTTTTTTTTGTTTTTTT
TTGTCTTGTCTTTTACCTTGTTTGCTTGCCAAAAAACGGATGGGATCGCA
AGCCGCATCGAGCTTGGGGAGAAGAAGCGAGAGAGGAGAGAGTACACGAG
GAGGCGTTTTGGCGTTTCGGTTGGCGTCTGCCGATCGATCATGCTTGCTT
GTGTACAATCAATTCGCACGGCAGAGGGAGTTGGGGTTGGTTGTACGGCA
AAACAACAAATCCGTCTTGTTGCTGCTGCTTTGGGGGGTCGTAGCGCTGC
CTGCTGCTGTACCGCGAACGATGGGCGCCGCGCTCTTGTGCCGAGTGTTG
GGGTTGGGGATGAGGAGGCAACAAACAGAGCGGTGGTGTCTTCCCGAGCG
TGTGTTTGCTGCGCGTGTGTGTGCTGATCGTGTGTGTGCTGCGCATGCGT
TCGCTGCGCGTGCCTGCGCCTGTGCCTGTGCGCGTGCGCACTCCGCTTGA
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