mRNA_L-elsbetiae_contig1733.4849.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1733.4849.1
Unique NamemRNA_L-elsbetiae_contig1733.4849.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1733.4849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1733contigL-elsbetiae_contig1733:15334..15783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.0601642-CDS-L-elsbetiae_contig1733:15333..156601622815722.0601642-CDS-L-elsbetiae_contig1733:15333..15660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 15334..15660 +
1691683059.8176582-CDS-L-elsbetiae_contig1733:15333..156601691683059.8176582-CDS-L-elsbetiae_contig1733:15333..15660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 15334..15660 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.07173-UTR-L-elsbetiae_contig1733:15660..157831622815722.07173-UTR-L-elsbetiae_contig1733:15660..15783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1733 15661..15783 +
1691683059.82679-UTR-L-elsbetiae_contig1733:15660..157831691683059.82679-UTR-L-elsbetiae_contig1733:15660..15783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1733 15661..15783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1733.4849.1prot_L-elsbetiae_contig1733.4849.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1733 15334..15660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1733.4849.1

>prot_L-elsbetiae_contig1733.4849.1 ID=prot_L-elsbetiae_contig1733.4849.1|Name=mRNA_L-elsbetiae_contig1733.4849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
HRLAGSVNNHRKKPGLPSSEHTQKGYGTKPSLRARERRHFLHKCLRKDVK
KTQTNPRSEVIFDEGATSSKYASKNVNQRQPSLGGGILLEKGATTVGDTK
YHTPWTEF*
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mRNA from alignment at L-elsbetiae_contig1733:15334..15783+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1733.4849.1 ID=mRNA_L-elsbetiae_contig1733.4849.1|Name=mRNA_L-elsbetiae_contig1733.4849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig1733:15334..15783+ (Laminarionema elsbetiae ELsaHSoW15)
CATCGGTTAGCTGGCTCTGTCAATAATCACCGCAAGAAGCCGGGACTACC
TTCCTCCGAACATACCCAGAAGGGATATGGCACAAAACCGAGCCTCAGAG
CTCGAGAAAGGCGTCACTTCCTCCACAAATGCCTCAGAAAGGATGTTAAA
AAGACACAAACGAACCCTCGGAGTGAGGTCATTTTTGACGAAGGCGCCAC
TTCCTCTAAATATGCCTCGAAAAATGTTAATCAGAGACAACCGAGCCTCG
GTGGTGGTATTCTTCTTGAGAAAGGCGCCACTACCGTAGGTGACACAAAA
TACCACACCCCCTGGACCGAATTTTAGAGCTCCATTGCTCCGCGACAAAG
AAGGTGCCAGCACCAAACGACGCATTTTCGGACAGCCCTTGACTAGGTAT
TTCCAACGCCGCCCTTTTTGGCACTGGCACTCTTCTGGCGGGGGAGGAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1733:15334..15783+

>mRNA_L-elsbetiae_contig1733.4849.1 ID=mRNA_L-elsbetiae_contig1733.4849.1|Name=mRNA_L-elsbetiae_contig1733.4849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig1733:15334..15783+ (Laminarionema elsbetiae ELsaHSoW15)
CATCGGTTAGCTGGCTCTGTCAATAATCACCGCAAGAAGCCGGGACTACC
TTCCTCCGAACATACCCAGAAGGGATATGGCACAAAACCGAGCCTCAGAG
CTCGAGAAAGGCGTCACTTCCTCCACAAATGCCTCAGAAAGGATGTTAAA
AAGACACAAACGAACCCTCGGAGTGAGGTCATTTTTGACGAAGGCGCCAC
TTCCTCTAAATATGCCTCGAAAAATGTTAATCAGAGACAACCGAGCCTCG
GTGGTGGTATTCTTCTTGAGAAAGGCGCCACTACCGTAGGTGACACAAAA
TACCACACCCCCTGGACCGAATTTTAGCATCGGTTAGCTGGCTCTGTCAA
TAATCACCGCAAGAAGCCGGGACTACCTTCCTCCGAACATACCCAGAAGG
GATATGGCACAAAACCGAGCCTCAGAGCTCGAGAAAGGCGTCACTTCCTC
CACAAATGCCTCAGAAAGGATGTTAAAAAGACACAAACGAACCCTCGGAG
TGAGGTCATTTTTGACGAAGGCGCCACTTCCTCTAAATATGCCTCGAAAA
ATGTTAATCAGAGACAACCGAGCCTCGGTGGTGGTATTCTTCTTGAGAAA
GGCGCCACTACCGTAGGTGACACAAAATACCACACCCCCTGGACCGAATT
TTAG
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