mRNA_L-elsbetiae_contig1733.4846.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1733.4846.1
Unique NamemRNA_L-elsbetiae_contig1733.4846.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1733.4846.1 vs. uniprot
Match: D7G1K5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K5_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.740e-6
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = -3 
Query:   82 MGAVMVDDPALVLFAGGIGMEGTVVDANVDAFAV 183
            MGAVMVDDPA++LFAGGIG  G VVD+NVD FAV
Sbjct:    1 MGAVMVDDPAVILFAGGIGRGGMVVDSNVDVFAV 34
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1733.4846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1K5_ECTSI1.740e-679.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1733contigL-elsbetiae_contig1733:6816..7243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size430
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.0041761-CDS-L-elsbetiae_contig1733:6815..71331622815722.0041761-CDS-L-elsbetiae_contig1733:6815..7133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 6816..7133 +
1691683059.7936492-CDS-L-elsbetiae_contig1733:6815..71331691683059.7936492-CDS-L-elsbetiae_contig1733:6815..7133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1733 6816..7133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.02394-UTR-L-elsbetiae_contig1733:7133..72431622815722.02394-UTR-L-elsbetiae_contig1733:7133..7243Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1733 7134..7243 +
1691683059.806744-UTR-L-elsbetiae_contig1733:7133..72431691683059.806744-UTR-L-elsbetiae_contig1733:7133..7243Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1733 7134..7243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1733.4846.1prot_L-elsbetiae_contig1733.4846.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1733 6816..7133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1733.4846.1

>prot_L-elsbetiae_contig1733.4846.1 ID=prot_L-elsbetiae_contig1733.4846.1|Name=mRNA_L-elsbetiae_contig1733.4846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
LLHQHVASLASVGAPAAVGLLESLCLPNCEGIDVCIDHRSFHAYTSRKQN
QGWVVHHDSAHVAPSSRQQETICRACVIRLDESSTACYSCCTTAPTKQKR
QREER*
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mRNA from alignment at L-elsbetiae_contig1733:6816..7243+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1733.4846.1 ID=mRNA_L-elsbetiae_contig1733.4846.1|Name=mRNA_L-elsbetiae_contig1733.4846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=428bp|location=Sequence derived from alignment at L-elsbetiae_contig1733:6816..7243+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCTCCACCAGCACGTCGCGTCCTTGGCCTCCGTCGGCGCTCCTGCTGC
TGTCGGGCTGCTGGAATCGCTCTGCCTCCCCAACTGCGAAGGCATCGACG
TTTGCATCGACCACCGTTCCTTCCATGCCTATACCTCCCGCAAACAAAAC
CAGGGCTGGGTCGTCCACCATGACAGCGCCCATGTAGCCCCTTCCTCGAG
ACAGCAGGAGACCATCTGTCGTGCCTGCGTGATCCGACTGGACGAGTCGT
CGACCGCATGTTATAGTTGCTGCACCACAGCACCAACCAAGCAAAAGCGA
CAGCGAGAGGAGCGCTAGGCTGGATCTAACCATTTGCCAGCGACGACAGT
GGAGACGCCGCCCTCGCAGTAGCGGCGTCCTCCTTGTGCGCCACATCAGG
CGCCGGTGTGTCGGTGTCGCAATTCGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1733:6816..7243+

>mRNA_L-elsbetiae_contig1733.4846.1 ID=mRNA_L-elsbetiae_contig1733.4846.1|Name=mRNA_L-elsbetiae_contig1733.4846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig1733:6816..7243+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCTCCACCAGCACGTCGCGTCCTTGGCCTCCGTCGGCGCTCCTGCTGC
TGTCGGGCTGCTGGAATCGCTCTGCCTCCCCAACTGCGAAGGCATCGACG
TTTGCATCGACCACCGTTCCTTCCATGCCTATACCTCCCGCAAACAAAAC
CAGGGCTGGGTCGTCCACCATGACAGCGCCCATGTAGCCCCTTCCTCGAG
ACAGCAGGAGACCATCTGTCGTGCCTGCGTGATCCGACTGGACGAGTCGT
CGACCGCATGTTATAGTTGCTGCACCACAGCACCAACCAAGCAAAAGCGA
CAGCGAGAGGAGCGCTAGCTTCTCCACCAGCACGTCGCGTCCTTGGCCTC
CGTCGGCGCTCCTGCTGCTGTCGGGCTGCTGGAATCGCTCTGCCTCCCCA
ACTGCGAAGGCATCGACGTTTGCATCGACCACCGTTCCTTCCATGCCTAT
ACCTCCCGCAAACAAAACCAGGGCTGGGTCGTCCACCATGACAGCGCCCA
TGTAGCCCCTTCCTCGAGACAGCAGGAGACCATCTGTCGTGCCTGCGTGA
TCCGACTGGACGAGTCGTCGACCGCATGTTATAGTTGCTGCACCACAGCA
CCAACCAAGCAAAAGCGACAGCGAGAGGAGCGCTAG
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