mRNA_L-elsbetiae_contig17318.4840.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17318.4840.1
Unique NamemRNA_L-elsbetiae_contig17318.4840.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17318.4840.1 vs. uniprot
Match: UPI00026572FD (NF-kappa-B inhibitor beta n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00026572FD)

HSP 1 Score: 55.5 bits (132), Expect = 3.810e-6
Identity = 53/163 (32.52%), Postives = 76/163 (46.63%), Query Frame = 1 
Query:    1 ETPLHMAVRCKNVKPARLLLRAGAVADVKDHNGMTQLHFAVSASCTGIVSEILSHTRRQDSSSSGLDLV-VSSSASAQRLRQHQ----RWQQQQHGGDGSAVGPGMRQVL-----------SARTKEGYTALHIAAMVYKPDIVNLLLRYGALETEKDEIGET 441
            +T LH+A   ++V  AR+L+ AGA+A+  D    T LH A       ++  ++     ++ S  GL L  VS SA   +L +      R     H     A+  G RQVL           +    EG TALH+AA + +PD++ LLL YGA     D  G T
Sbjct:  116 QTALHVACEHEDVTCARMLVCAGAIANRADSMLYTPLHIASGKGNLMLLKALVDPITTEEVSDLGLTLYGVSPSAPRTKLAEISSLCSRGMTPMH----LAITSGNRQVLQELLNLAIDFDTRELLEGRTALHLAADLRRPDMLRLLLEYGAAVDGTDYSGRT 274
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17318.4840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00026572FD3.810e-632.52NF-kappa-B inhibitor beta n=1 Tax=Galendromus occi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17318contigL-elsbetiae_contig17318:309..761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size438
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.4829967-CDS-L-elsbetiae_contig17318:308..7461622815721.4829967-CDS-L-elsbetiae_contig17318:308..746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17318 309..746 -
1691683059.48327-CDS-L-elsbetiae_contig17318:308..7461691683059.48327-CDS-L-elsbetiae_contig17318:308..746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17318 309..746 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.4983857-UTR-L-elsbetiae_contig17318:746..7611622815721.4983857-UTR-L-elsbetiae_contig17318:746..761Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17318 747..761 -
1691683059.4935327-UTR-L-elsbetiae_contig17318:746..7611691683059.4935327-UTR-L-elsbetiae_contig17318:746..761Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17318 747..761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17318.4840.1prot_L-elsbetiae_contig17318.4840.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17318 309..746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17318.4840.1

>prot_L-elsbetiae_contig17318.4840.1 ID=prot_L-elsbetiae_contig17318.4840.1|Name=mRNA_L-elsbetiae_contig17318.4840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MAVRCKNVKPARLLLRAGAVADVKDHNGMTQLHFAVSASCTGIVSEILSH
TRRQDSSSSGLDLVVSSSASAQRLRQHQRWQQQQHGGDGSAVGPGMRQVL
SARTKEGYTALHIAAMVYKPDIVNLLLRYGALETEKDEIGETLFL*
back to top

mRNA from alignment at L-elsbetiae_contig17318:309..761-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17318.4840.1 ID=mRNA_L-elsbetiae_contig17318.4840.1|Name=mRNA_L-elsbetiae_contig17318.4840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=453bp|location=Sequence derived from alignment at L-elsbetiae_contig17318:309..761- (Laminarionema elsbetiae ELsaHSoW15)
GAAACGCCTCTTCACATGGCGGTGCGATGCAAGAACGTGAAGCCCGCCAG
GCTCCTCCTGCGTGCGGGTGCGGTCGCAGACGTGAAAGACCACAACGGCA
TGACCCAACTGCACTTCGCGGTCAGCGCCAGCTGCACGGGAATTGTGTCC
GAGATATTGAGCCACACCAGACGGCAAGACTCCTCTTCCTCAGGCCTGGA
CCTCGTGGTGAGTTCTTCGGCATCGGCTCAACGCTTGCGGCAGCATCAGC
GTTGGCAGCAGCAGCAGCATGGCGGTGATGGGAGTGCCGTGGGCCCTGGC
ATGCGCCAGGTGCTGTCTGCACGCACCAAAGAGGGGTACACAGCCCTGCA
CATTGCCGCGATGGTCTACAAGCCGGACATTGTCAACCTTCTGCTCCGTT
ATGGAGCTCTCGAGACCGAGAAAGACGAGATCGGGGAGACACTCTTCCTG
TGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17318:309..761-

>mRNA_L-elsbetiae_contig17318.4840.1 ID=mRNA_L-elsbetiae_contig17318.4840.1|Name=mRNA_L-elsbetiae_contig17318.4840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig17318:309..761- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGTGCGATGCAAGAACGTGAAGCCCGCCAGGCTCCTCCTGCGTGC
GGGTGCGGTCGCAGACGTGAAAGACCACAACGGCATGACCCAACTGCACT
TCGCGGTCAGCGCCAGCTGCACGGGAATTGTGTCCGAGATATTGAGCCAC
ACCAGACGGCAAGACTCCTCTTCCTCAGGCCTGGACCTCGTGGTGAGTTC
TTCGGCATCGGCTCAACGCTTGCGGCAGCATCAGCGTTGGCAGCAGCAGC
AGCATGGCGGTGATGGGAGTGCCGTGGGCCCTGGCATGCGCCAGGTGCTG
TCTGCACGCACCAAAGAGGGGTACACAGCCCTGCACATTGCCGCGATGGT
CTACAAGCCGGACATTGTCAACCTTCTGCTCCGTTATGGAGCTCTCGAGA
CCGAGAAAGACGAGATCGGGGAGACACTCTTCCTGTGAATGGCGGTGCGA
TGCAAGAACGTGAAGCCCGCCAGGCTCCTCCTGCGTGCGGGTGCGGTCGC
AGACGTGAAAGACCACAACGGCATGACCCAACTGCACTTCGCGGTCAGCG
CCAGCTGCACGGGAATTGTGTCCGAGATATTGAGCCACACCAGACGGCAA
GACTCCTCTTCCTCAGGCCTGGACCTCGTGGTGAGTTCTTCGGCATCGGC
TCAACGCTTGCGGCAGCATCAGCGTTGGCAGCAGCAGCAGCATGGCGGTG
ATGGGAGTGCCGTGGGCCCTGGCATGCGCCAGGTGCTGTCTGCACGCACC
AAAGAGGGGTACACAGCCCTGCACATTGCCGCGATGGTCTACAAGCCGGA
CATTGTCAACCTTCTGCTCCGTTATGGAGCTCTCGAGACCGAGAAAGACG
AGATCGGGGAGACACTCTTCCTGTGA
back to top