mRNA_L-elsbetiae_contig17313.4839.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17313.4839.1
Unique NamemRNA_L-elsbetiae_contig17313.4839.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17313.4839.1 vs. uniprot
Match: D8LMZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ3_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 5.750e-95
Identity = 140/164 (85.37%), Postives = 153/164 (93.29%), Query Frame = 1 
Query:    4 ENYEAGFKESARIFFEREERKKNIHAIMLEELEAESAHWISTPEDVTAKITDDIWETPGNNSAGGQISMPDEHLWRFSADVGLYNQEEEPSERNAYLRSRMYSRMKEMNTAETYVRERRTRWDNDTRGLLKEADRLLRKKRPAPLGYMERLESSGAANRWKPMQ 495
            ENYEAG++ESAR+FFEREERKKNIHAI+LEELEAES HWI+TPEDVTAKITDD+WE PGNN+A GQISMPDEHLWRFSADVGLYNQEE+PSER+ YLRSRMYSRM+EM+TA TY RERRTRWDNDTRGLLKEADRLLRKKRP P GYM RLESSG A +WKPM+
Sbjct:  168 ENYEAGYRESARVFFEREERKKNIHAILLEELEAESEHWINTPEDVTAKITDDLWEAPGNNTAKGQISMPDEHLWRFSADVGLYNQEEDPSERDPYLRSRMYSRMQEMHTAGTYARERRTRWDNDTRGLLKEADRLLRKKRPGPPGYMSRLESSGKATQWKPME 331
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17313.4839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMZ3_ECTSI5.750e-9585.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17313contigL-elsbetiae_contig17313:1072..3210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_001170.1
Exons3
Model size513
Cds size513
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17313.4839.1prot_L-elsbetiae_contig17313.4839.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17313 1072..3210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.4212418-CDS-L-elsbetiae_contig17313:1071..13141622815721.4212418-CDS-L-elsbetiae_contig17313:1071..1314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17313 1072..1314 -
1691683059.4527905-CDS-L-elsbetiae_contig17313:1071..13141691683059.4527905-CDS-L-elsbetiae_contig17313:1071..1314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17313 1072..1314 -
1622815721.4325113-CDS-L-elsbetiae_contig17313:2147..23511622815721.4325113-CDS-L-elsbetiae_contig17313:2147..2351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17313 2148..2351 -
1691683059.463554-CDS-L-elsbetiae_contig17313:2147..23511691683059.463554-CDS-L-elsbetiae_contig17313:2147..2351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17313 2148..2351 -
1622815721.446868-CDS-L-elsbetiae_contig17313:3144..32101622815721.446868-CDS-L-elsbetiae_contig17313:3144..3210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17313 3145..3210 -
1691683059.4734938-CDS-L-elsbetiae_contig17313:3144..32101691683059.4734938-CDS-L-elsbetiae_contig17313:3144..3210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17313 3145..3210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17313.4839.1

>prot_L-elsbetiae_contig17313.4839.1 ID=prot_L-elsbetiae_contig17313.4839.1|Name=mRNA_L-elsbetiae_contig17313.4839.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=171bp
QENYEAGFKESARIFFEREERKKNIHAIMLEELEAESAHWISTPEDVTAK
ITDDIWETPGNNSAGGQISMPDEHLWRFSADVGLYNQEEEPSERNAYLRS
RMYSRMKEMNTAETYVRERRTRWDNDTRGLLKEADRLLRKKRPAPLGYME
RLESSGAANRWKPMQENADE*
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mRNA from alignment at L-elsbetiae_contig17313:1072..3210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17313.4839.1 ID=mRNA_L-elsbetiae_contig17313.4839.1|Name=mRNA_L-elsbetiae_contig17313.4839.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2139bp|location=Sequence derived from alignment at L-elsbetiae_contig17313:1072..3210- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAAAACTACGAGGCCGGGTTCAAGGAGAGCGCCCGTATTTTCTTCGA
GCGGGAAGAGCGCAAGGTGGGTCACGGCATTTTATTACATACAGGCGAAG
CAACAACCTGCGAACAGCGGTGAACCAAGTCAAGGGTGTACAAGACTGCT
GCTGTGGAAATGTCGCCCCTTTCTCAATTTTCATTGAGACTCTTTCCTTA
AATGGCGCACCCTTTTGCTCTGCAGTCATGAAAAAACCCTATTGTACTCT
GTTGTGGGAATGGTGTGGCGCACCTCTCGTGGCTATTTAATATCCTTCGT
GGCTGGAATATGGCTTGCGATGGCTCGATGATGGCTGCCTTTTTAAAGGG
CGGCCTACTTTCGTCTAATATGTATTGCACGCTTCCTGAGAAATGGGCAG
GCAAGCGGCTTGCAAAGCCCTGTCTCTTTCTCTCTACCATGTCTGGGCAA
TCATGCTCGGTTGGTTTTCGCCATCGCGGAAAGCAGCCCTTTGTTTTTTG
CCGGCACTGGCAAGTGTTTTATGGGGTTTGCTTAAAAGGCCGTGGCATGG
AGCACTCCGCTCGACATCCCCCCTGAGCTTTCTCCCCATGCGAACGAAGA
CACTTCGGCTCGAAACCCTTTTGCCGTGCGGTTCAGCACTTTTTGTAGCC
TGTTTTTTCTTCTTGTGTGTATAGAAACCTTGCATTGGATGTTGGTTCCC
TCCACACACGGGCCCACGGCCACGAGGATTACGTCGGTATTTCGGACGAT
TGACGATTGCCAAGCACCTTGTGCGTACGAAGGCTTGTTCCGCGGAAGGC
TGTTCCCCTCACCGCACCTTTGCTGCGTGCACCTCGTTATTTCTACTGGC
GCTTCCCAGAAAAACATCCACGCCATCATGCTGGAAGAGCTGGAGGCCGA
GAGCGCGCACTGGATCAGCACCCCCGAGGACGTCACCGCCAAGATCACGG
ATGACATCTGGGAAACGCCGGGGAACAATTCGGCGGGGGGGCAGATCAGC
ATGCCGGACGAGCACCTCTGGCGCTTTTCGGCGGATGTGGGGCTCTACAA
CCAGGAGGAGGAGGTGTGTGTTTGTCTATTTGTGTTCAAATTTTTTTTTG
TGATGCTAAACTTTTGTTCGCTGTTGTCGGTGAAAAAGTGAAAAGCGCGA
GCAAACCTTAATCTTCATGGTTTGCGTATGTACGTATGGTACGTGCGTAC
CCCGTGCTTGTTGCACCCTTGGCCTTTGGGCACATACTTCGAAGTAATGC
AAGTACATAAAACCGGGGTGTTGAAACATCGCCGTAGCTGTGTAGCTATT
TAGCTAGATTGACGGCATTAGGTGGATGCTCCTCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGTCGTCGCGGGGG
CGTTTTTTTTTTTTTTTTGGTTGTTTTGGGCGGTGCGCGGCGCGCTCTCN
NNNNNNNNNTGTTATCTCCCCGTCGTTGTTGTTTTTTTTTTTTTTTTTGT
CGGCTCGAGGGGGGGGCCCCCCCCCCCCCCCCCCCCCCCCGCGCCCCTCC
AGAGGTTGCCGGGTAGTCAAGTCCTGTGTAGGTTGTCTCTTCTTTGTTGT
TGGCTGCGTGAGGCGCGAAACAATCGATTCGCCGCGACGAGAAACCCGAA
ATTGGCGGTGCTCTGGTCGTGCATGTATTTAGTGATGGCGGTGTGTGAAG
TGACCCATTGTGTGCGTACATGCCACGTGTTTCTCCGAACAGAAGCGTTG
CAAACCAGCCGGGCGGGTCCAGACCGTGCATGCATGCGCCGGAGAAGGCA
ACCGTACTTTGCTGATGTACACCTGCGAATTCGATGTGTCTTCGCCTCAC
CCAGTTTTTCCCTTGCCCCCACTCTCTCTCTCTCTCTCTTATGCAGCCCT
CCGAGCGTAACGCCTACCTGCGCTCGAGGATGTACTCGCGCATGAAGGAG
ATGAACACCGCGGAGACGTACGTGAGAGAGCGCCGCACGCGATGGGACAA
CGACACCAGGGGTCTCCTCAAGGAGGCCGACCGGCTACTCCGCAAGAAGC
GTCCCGCCCCTCTGGGGTACATGGAGCGGCTAGAGTCGTCGGGCGCGGCA
AACCGGTGGAAACCTATGCAGGAGAATGCCGACGAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17313:1072..3210-

>mRNA_L-elsbetiae_contig17313.4839.1 ID=mRNA_L-elsbetiae_contig17313.4839.1|Name=mRNA_L-elsbetiae_contig17313.4839.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1026bp|location=Sequence derived from alignment at L-elsbetiae_contig17313:1072..3210- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAAAACTACGAGGCCGGGTTCAAGGAGAGCGCCCGTATTTTCTTCGA
GCGGGAAGAGCGCAAGCAGGAAAACTACGAGGCCGGGTTCAAGGAGAGCG
CCCGTATTTTCTTCGAGCGGGAAGAGCGCAAGAAAAACATCCACGCCATC
ATGCTGGAAGAGCTGGAGGCCGAGAGCGCGCACTGGATCAGCACCCCCGA
GGACGTCACCGCCAAGATCACGGATGACATCTGGGAAACGCCGGGGAACA
ATTCGGCGGGGGGGCAGATCAGCATGCCGGACGAGCACCTCTGGCGCTTT
TCGGCGGATGTGGGGCTCTACAACCAGGAGGAGGAGAAAAACATCCACGC
CATCATGCTGGAAGAGCTGGAGGCCGAGAGCGCGCACTGGATCAGCACCC
CCGAGGACGTCACCGCCAAGATCACGGATGACATCTGGGAAACGCCGGGG
AACAATTCGGCGGGGGGGCAGATCAGCATGCCGGACGAGCACCTCTGGCG
CTTTTCGGCGGATGTGGGGCTCTACAACCAGGAGGAGGAGCCCTCCGAGC
GTAACGCCTACCTGCGCTCGAGGATGTACTCGCGCATGAAGGAGATGAAC
ACCGCGGAGACGTACGTGAGAGAGCGCCGCACGCGATGGGACAACGACAC
CAGGGGTCTCCTCAAGGAGGCCGACCGGCTACTCCGCAAGAAGCGTCCCG
CCCCTCTGGGGTACATGGAGCGGCTAGAGTCGTCGGGCGCGGCAAACCGG
TGGAAACCTATGCAGGAGAATGCCGACGAGTAACCCTCCGAGCGTAACGC
CTACCTGCGCTCGAGGATGTACTCGCGCATGAAGGAGATGAACACCGCGG
AGACGTACGTGAGAGAGCGCCGCACGCGATGGGACAACGACACCAGGGGT
CTCCTCAAGGAGGCCGACCGGCTACTCCGCAAGAAGCGTCCCGCCCCTCT
GGGGTACATGGAGCGGCTAGAGTCGTCGGGCGCGGCAAACCGGTGGAAAC
CTATGCAGGAGAATGCCGACGAGTAA
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