mRNA_L-elsbetiae_contig17303.4835.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17303.4835.1
Unique NamemRNA_L-elsbetiae_contig17303.4835.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17303.4835.1 vs. uniprot
Match: A0A6H5KXI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI9_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 6.620e-5
Identity = 54/121 (44.63%), Postives = 61/121 (50.41%), Query Frame = -1 
Query:   16 RRAPAWDGTGSGSGGCGLLDEGTAGG-----------------GXXXXXXXXAGSHLTNNG---SGGAAAGRGVSSSAGKSG-VGRATVASAAAQ----QPLESSKIRRVSRSPATRAAHE 303
            R APAW+G G G+  C   + G  GG                 G        +G  L   G   SG  + GRG+S    K G VGRATVASAAA     QPLESSKIRRV+RSPATR  HE
Sbjct:  370 RGAPAWEGNGGGAADC---EAGAGGGRDVNGSDSGAFTDDDAAGRGGCRAPASGGRLKAGGLSSSGVNSRGRGLSXXXXKGGGVGRATVASAAAAAATAQPLESSKIRRVARSPATRGLHE 487
[Close]
BLAST of mRNA_L-elsbetiae_contig17303.4835.1 vs. uniprot
Match: D8LBU8_ECTSI (Similar to centromere protein E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU8_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 9.450e-5
Identity = 60/145 (41.38%), Postives = 66/145 (45.52%), Query Frame = -1 
Query:   16 NADKENRGE-----ALQRR-APAWDGTGSGSGGC----------------GLLDEGTAGGGXXXXXXXXAGSHLTNNGSGGAAAGRGVSSSAGKS-------------GVGRATVASAAAQ--QPLESSKIRRVSRSPATRAAHE 339
            +ADKENR +     A QRR APAW+G G G   C                   D+  AG G                 SGG     G+SSS   S              VGRATVASAAA   QPLESSKIRRV+RSPATR  HE
Sbjct:  575 HADKENRVQQKQAAAAQRRGAPAWEGNGGGGADCEAGXXXXXXXXXXXXXAFTDDDAAGRGGCRAPA-----------SGGRLKTSGLSSSGVNSRGRXXXXXXXXXXXVGRATVASAAAAATQPLESSKIRRVARSPATRGLHE 708
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17303.4835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXI9_9PHAE6.620e-544.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBU8_ECTSI9.450e-541.38Similar to centromere protein E n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17303contigL-elsbetiae_contig17303:1427..1809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size385
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.1580648-CDS-L-elsbetiae_contig17303:1426..18071622815721.1580648-CDS-L-elsbetiae_contig17303:1426..1807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17303 1427..1807 +
1691683059.3200128-CDS-L-elsbetiae_contig17303:1426..18071691683059.3200128-CDS-L-elsbetiae_contig17303:1426..1807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17303 1427..1807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17303.4835.1prot_L-elsbetiae_contig17303.4835.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17303 1427..1807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17303.4835.1

>prot_L-elsbetiae_contig17303.4835.1 ID=prot_L-elsbetiae_contig17303.4835.1|Name=mRNA_L-elsbetiae_contig17303.4835.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
VAGAALVRRARRRRPRHAPDLAALQGLLRGSASDGGPANAALARRRGHSA
PCRRTAAAVVGQVTAGTGTAPARPTAARGTFIQQTAAAAPAPGPIPRRSA
PLQGLAPVLLVGVASGSLRGRKKTRAA
back to top

mRNA from alignment at L-elsbetiae_contig17303:1427..1809+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17303.4835.1 ID=mRNA_L-elsbetiae_contig17303.4835.1|Name=mRNA_L-elsbetiae_contig17303.4835.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=383bp|location=Sequence derived from alignment at L-elsbetiae_contig17303:1427..1809+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCGGGAGCCGCTCTCGTGCGCCGCGCGCGTCGCCGGCGACCTCGACA
CGCGCCGGATCTTGCTGCTCTCCAAGGGCTGCTGCGCGGCAGCGCTAGCG
ACGGTGGCCCTGCCAACGCCGCTCTTGCCCGCCGACGAGGACACTCCGCG
CCCTGCCGCCGCACCGCCGCTGCCGTTGTTGGTCAAGTGACTGCCGGCAC
CGGCACGGCCCCTGCCCGCCCTACCGCCGCCCGCGGTACCTTCATCCAGC
AAACCGCAGCCGCCGCTCCCGCTCCCGGTCCCATCCCACGCAGGAGCGCG
CCGCTGCAGGGCCTCGCCCCTGTTCTCCTTGTCGGCGTTGCGAGCGGAAG
CCTCCGGGGTCGAAAAAAAACACGGGCTGCCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17303:1427..1809+

>mRNA_L-elsbetiae_contig17303.4835.1 ID=mRNA_L-elsbetiae_contig17303.4835.1|Name=mRNA_L-elsbetiae_contig17303.4835.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig17303:1427..1809+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCGGGAGCCGCTCTCGTGCGCCGCGCGCGTCGCCGGCGACCTCGACA
CGCGCCGGATCTTGCTGCTCTCCAAGGGCTGCTGCGCGGCAGCGCTAGCG
ACGGTGGCCCTGCCAACGCCGCTCTTGCCCGCCGACGAGGACACTCCGCG
CCCTGCCGCCGCACCGCCGCTGCCGTTGTTGGTCAAGTGACTGCCGGCAC
CGGCACGGCCCCTGCCCGCCCTACCGCCGCCCGCGGTACCTTCATCCAGC
AAACCGCAGCCGCCGCTCCCGCTCCCGGTCCCATCCCACGCAGGAGCGCG
CCGCTGCAGGGCCTCGCCCCTGTTCTCCTTGTCGGCGTTGCGAGCGGAAG
CCTCCGGGGTCGAAAAAAAACACGGGCTGCCGTTGCGGGAGCCGCTCTCG
TGCGCCGCGCGCGTCGCCGGCGACCTCGACACGCGCCGGATCTTGCTGCT
CTCCAAGGGCTGCTGCGCGGCAGCGCTAGCGACGGTGGCCCTGCCAACGC
CGCTCTTGCCCGCCGACGAGGACACTCCGCGCCCTGCCGCCGCACCGCCG
CTGCCGTTGTTGGTCAAGTGACTGCCGGCACCGGCACGGCCCCTGCCCGC
CCTACCGCCGCCCGCGGTACCTTCATCCAGCAAACCGCAGCCGCCGCTCC
CGCTCCCGGTCCCATCCCACGCAGGAGCGCGCCGCTGCAGGGCCTCGCCC
CTGTTCTCCTTGTCGGCGTTGCGAGCGGAAGCCTCCGGGGTCGAAAAAAA
ACACGGGCTGCC
back to top