mRNA_L-elsbetiae_contig1730.4834.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1730.4834.1
Unique NamemRNA_L-elsbetiae_contig1730.4834.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1730.4834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1730contigL-elsbetiae_contig1730:19547..19899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size354
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.1226122-CDS-L-elsbetiae_contig1730:19546..198971622815721.1226122-CDS-L-elsbetiae_contig1730:19546..19897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1730 19547..19897 +
1691683059.31075-CDS-L-elsbetiae_contig1730:19546..198971691683059.31075-CDS-L-elsbetiae_contig1730:19546..19897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1730 19547..19897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1730.4834.1prot_L-elsbetiae_contig1730.4834.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1730 19547..19897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1730.4834.1

>prot_L-elsbetiae_contig1730.4834.1 ID=prot_L-elsbetiae_contig1730.4834.1|Name=mRNA_L-elsbetiae_contig1730.4834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
PSLPVHISRRTTIAPALVALQILFKISSQLHRCRPCPTYPSSKSLYHPNL
PPLRFRRNPLPRTPPSTPPPRSFHGYSREQRLSSERPKTTLPRRHPQSIF
PKTVHDARAAVTVDANP
back to top

mRNA from alignment at L-elsbetiae_contig1730:19547..19899+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1730.4834.1 ID=mRNA_L-elsbetiae_contig1730.4834.1|Name=mRNA_L-elsbetiae_contig1730.4834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=353bp|location=Sequence derived from alignment at L-elsbetiae_contig1730:19547..19899+ (Laminarionema elsbetiae ELsaHSoW15)
CCTAGTCTCCCCGTCCACATATCCCGTCGCACTACTATCGCCCCCGCTCT
CGTCGCTCTCCAAATCCTCTTCAAAATCAGCTCTCAGTTACACCGGTGCC
GTCCCTGCCCTACCTACCCCTCCTCCAAGTCACTCTACCACCCCAACCTC
CCGCCCTTGCGTTTCCGTCGGAATCCTCTTCCTCGAACTCCTCCTTCTAC
TCCTCCTCCCCGCTCTTTCCATGGCTACTCTCGAGAACAACGGCTGAGCA
GCGAGCGCCCCAAGACCACGCTTCCGCGGCGCCACCCGCAGAGTATTTTT
CCAAAGACGGTTCATGATGCGCGTGCTGCCGTTACTGTCGATGCAAACCC
TGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1730:19547..19899+

>mRNA_L-elsbetiae_contig1730.4834.1 ID=mRNA_L-elsbetiae_contig1730.4834.1|Name=mRNA_L-elsbetiae_contig1730.4834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig1730:19547..19899+ (Laminarionema elsbetiae ELsaHSoW15)
CCTAGTCTCCCCGTCCACATATCCCGTCGCACTACTATCGCCCCCGCTCT
CGTCGCTCTCCAAATCCTCTTCAAAATCAGCTCTCAGTTACACCGGTGCC
GTCCCTGCCCTACCTACCCCTCCTCCAAGTCACTCTACCACCCCAACCTC
CCGCCCTTGCGTTTCCGTCGGAATCCTCTTCCTCGAACTCCTCCTTCTAC
TCCTCCTCCCCGCTCTTTCCATGGCTACTCTCGAGAACAACGGCTGAGCA
GCGAGCGCCCCAAGACCACGCTTCCGCGGCGCCACCCGCAGAGTATTTTT
CCAAAGACGGTTCATGATGCGCGTGCTGCCGTTACTGTCGATGCAAACCC
TCCTAGTCTCCCCGTCCACATATCCCGTCGCACTACTATCGCCCCCGCTC
TCGTCGCTCTCCAAATCCTCTTCAAAATCAGCTCTCAGTTACACCGGTGC
CGTCCCTGCCCTACCTACCCCTCCTCCAAGTCACTCTACCACCCCAACCT
CCCGCCCTTGCGTTTCCGTCGGAATCCTCTTCCTCGAACTCCTCCTTCTA
CTCCTCCTCCCCGCTCTTTCCATGGCTACTCTCGAGAACAACGGCTGAGC
AGCGAGCGCCCCAAGACCACGCTTCCGCGGCGCCACCCGCAGAGTATTTT
TCCAAAGACGGTTCATGATGCGCGTGCTGCCGTTACTGTCGATGCAAACC
CT
back to top