mRNA_L-elsbetiae_contig1730.4833.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1730.4833.1
Unique NamemRNA_L-elsbetiae_contig1730.4833.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1730.4833.1 vs. uniprot
Match: D7FGV5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 9.170e-14
Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 3 
Query:  570 ASLVFPSALAGGSGAVKPDSKDFWCDADNEQVCWLLGAPTADSPRLLELALLQGFVGQRMAK----YYKKNS 773
            A L F SA AG   AV P S+DFW +AD+EQV  LL APTAD+PRL+ELALLQG  GQRMA+    YYKK S
Sbjct:  491 APLAFTSASAGDPDAVNPGSEDFWRNADDEQVYSLLSAPTADTPRLVELALLQGSAGQRMAQGLANYYKKPS 562
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1730.4833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGV5_ECTSI9.170e-1463.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1730contigL-elsbetiae_contig1730:7017..9006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size810
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1730.4833.1prot_L-elsbetiae_contig1730.4833.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1730 7017..7520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.0486166-CDS-L-elsbetiae_contig1730:7016..75201622815721.0486166-CDS-L-elsbetiae_contig1730:7016..7520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1730 7017..7520 +
1691683059.274148-CDS-L-elsbetiae_contig1730:7016..75201691683059.274148-CDS-L-elsbetiae_contig1730:7016..7520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1730 7017..7520 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.0616798-UTR-L-elsbetiae_contig1730:7520..76781622815721.0616798-UTR-L-elsbetiae_contig1730:7520..7678Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1730 7521..7678 +
1691683059.2846785-UTR-L-elsbetiae_contig1730:7520..76781691683059.2846785-UTR-L-elsbetiae_contig1730:7520..7678Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1730 7521..7678 +
1622815721.0754013-UTR-L-elsbetiae_contig1730:8017..81221622815721.0754013-UTR-L-elsbetiae_contig1730:8017..8122Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1730 8018..8122 +
1691683059.2934463-UTR-L-elsbetiae_contig1730:8017..81221691683059.2934463-UTR-L-elsbetiae_contig1730:8017..8122Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1730 8018..8122 +
1622815721.0895846-UTR-L-elsbetiae_contig1730:8963..90061622815721.0895846-UTR-L-elsbetiae_contig1730:8963..9006Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1730 8964..9006 +
1691683059.3020463-UTR-L-elsbetiae_contig1730:8963..90061691683059.3020463-UTR-L-elsbetiae_contig1730:8963..9006Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1730 8964..9006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1730.4833.1

>prot_L-elsbetiae_contig1730.4833.1 ID=prot_L-elsbetiae_contig1730.4833.1|Name=mRNA_L-elsbetiae_contig1730.4833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MRRGQEERRREEKASALGLPLRPPAASTTVVAAAAAAAAAAASTLAATSA
GGVTGFRLGRTISSTAVPRPASHPPPQRPLLPWHQPRTRGCSSVAPPTTT
TLSPAGTGGLSLRGASAAAAATPATATATASAPAPAAASTAATAAAPSST
SAAPAYLRSSVWIVCCE*
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mRNA from alignment at L-elsbetiae_contig1730:7017..9006+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1730.4833.1 ID=mRNA_L-elsbetiae_contig1730.4833.1|Name=mRNA_L-elsbetiae_contig1730.4833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1990bp|location=Sequence derived from alignment at L-elsbetiae_contig1730:7017..9006+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCGAGGGCAGGAGGAGAGGCGAAGAGAAGAGAAGGCTTCAGCTTT
GGGGCTGCCCCTGCGCCCGCCCGCGGCATCGACAACAGTAGTAGCAGCCG
CAGCAGCAGCCGCAGCAGCAGCAGCGTCGACACTGGCAGCGACGAGCGCG
GGGGGCGTCACCGGATTTAGACTCGGAAGGACAATTTCGTCTACCGCCGT
GCCGCGGCCGGCCAGCCATCCGCCGCCACAACGACCATTGCTACCGTGGC
ATCAGCCAAGGACACGCGGCTGCTCCAGTGTCGCGCCGCCCACCACGACT
ACATTGAGTCCAGCAGGGACCGGAGGATTAAGCTTGAGAGGAGCTTCTGC
CGCCGCTGCCGCTACTCCGGCAACAGCAACGGCGACGGCAAGCGCTCCCG
CGCCTGCCGCCGCTTCTACTGCTGCTACCGCTGCTGCTCCTTCCTCAACA
AGTGCTGCGCCGGCCTACCTCCGAAGTAGTGTTTGGATCGTCTGCTGTGA
GTAGTGACGGTGGAGGCGTGGGCGGGTCGCCCGGGCTGCAGCTTCGCCGT
TATTGGTTCGACTCCGGCGGCATCGTTGGTGTTTCCGAGCGCGTTGGCCG
GGGGCTCTGGCGCAGTCAAACCTGACTCGAAGGACTTCTGGTGCGACGCC
GACAACGAACAGGTACAGCCAGTTTACAATTTACACAACTGCTCGCAAAA
ACACGTGCTTGTGGCGTGTTGATTGGTCTTCCAGGAAGAACCATGTTTTT
TTTTTATGGAGCATGTCAGGTGTGCCAGTGTTGTAGTGTCCTCGTTGATA
TTTCACCTGAGGGTGTGTGTACGCAGATTCCAATGTGCCACCGCGCGCGA
TGTGTGTTCTTGTTGTGGGAGCCTTCTCCGAGCGGGCAAATGCTGGCACC
TGTGCTTGCGTGTTCGGCCCGGGTGTGGCCGACCCCGCCAAACATCACAA
ACTCGTGCTCGCCTCTGCTTTGCCGCGGCGCTTTTATATGTTTCCCGAAA
GGTGTGCTGGCTGCTAGGCGCTCCCACCGCAGACAGCCCGAGGCTGCTGG
AGCTGGCGCTGTTGCAGGGCTTTGTCGGGCAGAGGATGGCCAAATACTAC
AAGAAGGTGCGGCCGCAGTTTGCAGTTTGCCGTACAAGTAGGCGTCGCCT
TTGTGGCGCGGTTAAGGTAGGGGGCAGTTTTGTTAGGTTTGCAGTAGTTC
GGATGGGGTTTGCTTCAGAAACAGGCATGTATGTAGGTCGAGATTCGGTA
GAGGGCTGCTGTCGTGGTCACTGCCTCAACGTGTACGCCACGAATGATAG
GGTTTAAGAGCCGCGGCTCTGATGTTGTTGTCGGCCGTGTCCTTACTACA
GCCATCTCTCTCAACTCAATGGGGCTACCCTCACCGCCCCTGCTACCGTC
CTCCTTGCCGTAGTATAGCAGCCCGTCTTTATGGCGAATAGATGGACGCT
TATTGCACCTGCGCAGGTCCAAACTGTCTCTTCGCGATCAAGCGATTAGG
CTTCGAAATGCACCAAATAGATGATACTCGTGTCTGTAGTGCGTTGTTTA
TTTGGTGCATACGCCACCCAAGCCCAGCCCTCTCAGGTTAATGCACAGTG
CTACAAGTACCGTTTGTTGTCTTCCTGGGTCCCGAGTTACGAAATATCGG
AATCGATCGCTCTTCATGTAGTTGGTGCCCACAGAAGGCGAAATAAGAAG
CAGAGAGGTGACAACATCACCCCAGCCGCCTTGGAAGTCGCCAAGAAGAC
CCAGAACCATTTGCCTTGAAATTTTTGGCGAAACCGGATACAGAACGCCA
TCTTTCCATGCCAGTCGTATGTCTCTGCTCGATAGGCTTTGAAATACAGG
TACACGAATTATGAAGGCCGACGATACATAGTTTACTGACCCGTGCTGTC
CCACCCTTTTTTTCTGCACAACCCTTCTCTGTGTGACCACGGATCAGAAC
TCTGGCATGATGCCCTTCGAGCGCTGGATTAACGTAAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1730:7017..9006+

>mRNA_L-elsbetiae_contig1730.4833.1 ID=mRNA_L-elsbetiae_contig1730.4833.1|Name=mRNA_L-elsbetiae_contig1730.4833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig1730:7017..9006+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCGAGGGCAGGAGGAGAGGCGAAGAGAAGAGAAGGCTTCAGCTTT
GGGGCTGCCCCTGCGCCCGCCCGCGGCATCGACAACAGTAGTAGCAGCCG
CAGCAGCAGCCGCAGCAGCAGCAGCGTCGACACTGGCAGCGACGAGCGCG
GGGGGCGTCACCGGATTTAGACTCGGAAGGACAATTTCGTCTACCGCCGT
GCCGCGGCCGGCCAGCCATCCGCCGCCACAACGACCATTGCTACCGTGGC
ATCAGCCAAGGACACGCGGCTGCTCCAGTGTCGCGCCGCCCACCACGACT
ACATTGAGTCCAGCAGGGACCGGAGGATTAAGCTTGAGAGGAGCTTCTGC
CGCCGCTGCCGCTACTCCGGCAACAGCAACGGCGACGGCAAGCGCTCCCG
CGCCTGCCGCCGCTTCTACTGCTGCTACCGCTGCTGCTCCTTCCTCAACA
AGTGCTGCGCCGGCCTACCTCCGAAGTAGTGTTTGGATCGTCTGCTGTGA
GTAGATGCGCCGAGGGCAGGAGGAGAGGCGAAGAGAAGAGAAGGCTTCAG
CTTTGGGGCTGCCCCTGCGCCCGCCCGCGGCATCGACAACAGTAGTAGCA
GCCGCAGCAGCAGCCGCAGCAGCAGCAGCGTCGACACTGGCAGCGACGAG
CGCGGGGGGCGTCACCGGATTTAGACTCGGAAGGACAATTTCGTCTACCG
CCGTGCCGCGGCCGGCCAGCCATCCGCCGCCACAACGACCATTGCTACCG
TGGCATCAGCCAAGGACACGCGGCTGCTCCAGTGTCGCGCCGCCCACCAC
GACTACATTGAGTCCAGCAGGGACCGGAGGATTAAGCTTGAGAGGAGCTT
CTGCCGCCGCTGCCGCTACTCCGGCAACAGCAACGGCGACGGCAAGCGCT
CCCGCGCCTGCCGCCGCTTCTACTGCTGCTACCGCTGCTGCTCCTTCCTC
AACAAGTGCTGCGCCGGCCTACCTCCGAAGTAGTGTTTGGATCGTCTGCT
GTGAGTAG
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