mRNA_L-elsbetiae_contig173.4829.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig173.4829.1
Unique NamemRNA_L-elsbetiae_contig173.4829.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig173.4829.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.740e-7
Identity = 36/74 (48.65%), Postives = 43/74 (58.11%), Query Frame = 3 
Query:  126 GFTALHCAA-----EVPDSGAVIRVLLEAGADIEAKTTKYGFTXXXXXX----KIASRGTIHALLDGGANCIAR 320
            G+TALHC        V D+G  +RVLLEAGAD++AKTT  G            +IA  G I ALL+GGAN  AR
Sbjct:   19 GYTALHCCVCDINEPVLDNGDTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNAR 92
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BLAST of mRNA_L-elsbetiae_contig173.4829.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.130e-6
Identity = 35/73 (47.95%), Postives = 43/73 (58.90%), Query Frame = 3 
Query:  126 GFTALHCAAEVP----DSGAVIRVLLEAGADIEAKTTKYGFTXXXXXX---KIASRGTIHALLDGGANCIARL 323
            G+ ALH AA +     D+G  +RVLL AGAD+ AK TK             +IAS GTI ALL+GGAN  AR+
Sbjct:  240 GWAALHYAASIDGPVRDNGDAVRVLLRAGADVSAKGTKDPCDTSLYLAVNRRIASDGTIRALLEGGANINARI 312
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig173.4829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6K9_9PHAE1.740e-748.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L812_9PHAE2.130e-647.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig173contigL-elsbetiae_contig173:10956..11281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.6414218-CDS-L-elsbetiae_contig173:10955..112791622815720.6414218-CDS-L-elsbetiae_contig173:10955..11279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig173 10956..11279 +
1691683059.0119996-CDS-L-elsbetiae_contig173:10955..112791691683059.0119996-CDS-L-elsbetiae_contig173:10955..11279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig173 10956..11279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig173.4829.1prot_L-elsbetiae_contig173.4829.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig173 10956..11279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig173.4829.1

>prot_L-elsbetiae_contig173.4829.1 ID=prot_L-elsbetiae_contig173.4829.1|Name=mRNA_L-elsbetiae_contig173.4829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
GANFSIRNNGDWSPFDIAAQHHVDIVRNLLQHGSSVKACDSRVSQPCIVL
LRCLTVARSSACCSKQGLILKRRPPNTALHRFTLLQRSRRGVRSTLCWMA
AQTALLDL
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mRNA from alignment at L-elsbetiae_contig173:10956..11281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig173.4829.1 ID=mRNA_L-elsbetiae_contig173.4829.1|Name=mRNA_L-elsbetiae_contig173.4829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=326bp|location=Sequence derived from alignment at L-elsbetiae_contig173:10956..11281+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCTAACTTCAGTATTCGCAACAACGGTGACTGGAGCCCGTTCGACAT
CGCAGCACAGCACCATGTAGACATCGTGAGAAACCTTCTGCAGCATGGAA
GTAGTGTCAAGGCCTGTGATTCAAGGGTTTCACAGCCCTGCATTGTGCTG
CTGAGGTGCCTGACAGTGGCGCGGTCATCCGCGTGTTGCTCGAAGCAGGG
GCTGATATTGAAGCGAAGACCACCAAATACGGCTTTACACCGCTTCACTC
TGCTGCAAAGATCGCGTCGAGGGGTACGATCCACGCTTTGTTGGATGGCG
GCGCAAACTGCATTGCTCGACTTACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig173:10956..11281+

>mRNA_L-elsbetiae_contig173.4829.1 ID=mRNA_L-elsbetiae_contig173.4829.1|Name=mRNA_L-elsbetiae_contig173.4829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig173:10956..11281+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCTAACTTCAGTATTCGCAACAACGGTGACTGGAGCCCGTTCGACAT
CGCAGCACAGCACCATGTAGACATCGTGAGAAACCTTCTGCAGCATGGAA
GTAGTGTCAAGGCCTGTGATTCAAGGGTTTCACAGCCCTGCATTGTGCTG
CTGAGGTGCCTGACAGTGGCGCGGTCATCCGCGTGTTGCTCGAAGCAGGG
GCTGATATTGAAGCGAAGACCACCAAATACGGCTTTACACCGCTTCACTC
TGCTGCAAAGATCGCGTCGAGGGGTACGATCCACGCTTTGTTGGATGGCG
GCGCAAACTGCATTGCTCGACTTAGGTGCTAACTTCAGTATTCGCAACAA
CGGTGACTGGAGCCCGTTCGACATCGCAGCACAGCACCATGTAGACATCG
TGAGAAACCTTCTGCAGCATGGAAGTAGTGTCAAGGCCTGTGATTCAAGG
GTTTCACAGCCCTGCATTGTGCTGCTGAGGTGCCTGACAGTGGCGCGGTC
ATCCGCGTGTTGCTCGAAGCAGGGGCTGATATTGAAGCGAAGACCACCAA
ATACGGCTTTACACCGCTTCACTCTGCTGCAAAGATCGCGTCGAGGGGTA
CGATCCACGCTTTGTTGGATGGCGGCGCAAACTGCATTGCTCGACTTA
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