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Homology
BLAST of mRNA_L-elsbetiae_contig1729.4827.1 vs. uniprot
Match: D7G7H0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H0_ECTSI) HSP 1 Score: 163 bits (412), Expect = 4.230e-41 Identity = 184/509 (36.15%), Postives = 243/509 (47.74%), Query Frame = 1
Query: 1 MYLASMGQLKHKRTRNTIAAEPTPRSSCASSAGPAXXXXXXXXXXXXXXXRNTRNNGANHGSDPVSQGATK----FECVGRSALAKANNSEANPVEPVEPG-HDKRSPKIVGDSS---LPLFSAAHRKEAGSDRDDRSASAPLFTRRPRARAASSTRGKLENRRPRSAGPSAGAVAAAAAT--LDPESPEARALAAETRFMPVGAIHRAFKGRRLAAVQAWDPQAAAAVRAARAEKLLRRTRIAGKTRT-TGAPMLAAASSAKRPLQGXXXXXXXXXXXXXDSRNEHKALLCPDERGG----------RRRIGPSSARRRSDQAHGNRSGEVVDWCGRNALIKDFFPSPPKLLDVAIRFCCLRERARQELGVVSAIEEAADGGSATGSEQGDSEEPDEPKRAPCSCRPG-------TATGSSG------TLSTARASTAAGYSSRGSGSTSGRATCSASSSDGIAAEE----RRARLLAELKALRRRMEDAEGLLREVDSSLLRPKPKK 1413
M+LASMG+LKHKRTRNTIAAE TPRSSC+S A P T N+ N ++ V +G + E G +A+ +A++ + PG S K VGD P +S + R+D+ A + PR S+ L + GP+ G + A AA+ + P +AAETR MPVGA+HRAFKGRRLAAVQAWDP AAAAVRA RAEK+LRR + G+TR +G M AAA + +RP + + EHK +RGG RR+G + R S DWCG L +D P + R + + A + A GG+ G+ + + D + C R +A+GSS T TAR STA SSR S G + C++ ++ +E RRARLLAEL+ LRRRM DAEGLLREVD S RPK ++
Sbjct: 1 MFLASMGRLKHKRTRNTIAAEETPRSSCSSEADPTAALVADPGIPKTTEKHQT-NSVKNIENEAVVKGVSAPVQYAETRGAAAVGRASDWPGD-----NPGVKHMNSGKAVGDRKGFRTPAWSPPRPLSPTAKRNDQDADS-----HPRNHGISNGGDDLLPAK----GPTEGNLGARAASSATSAKFPTGEDVAAETRLMPVGALHRAFKGRRLAAVQAWDPLAAAAVRAERAEKMLRRA-LLGRTRANSGETMPAAAPARRRPRKAPGTKAAAT------TTTEHKVGGIGSDRGGGVGGARKCSSARRVGGPAERAVGRGGSLGDSKSDADWCGSRGLRRDARREPSRTELARTVAAVERIGGSRIVHGAGAPSKPAVGGTPAGANDLSTRKRDAVEGGSCPSRGSIKTSKSRSASGSSRETNPMHTWGTARTSTATSRSSRCPSSRRGSSACNSGRGTSVSGDEPVEMRRARLLAELEVLRRRMHDAEGLLREVDRS--RPKQRR 485
BLAST of mRNA_L-elsbetiae_contig1729.4827.1 vs. uniprot
Match: A0A6H5KIE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE2_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.810e-15 Identity = 60/101 (59.41%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 460 NRRPRSAGPSAGAVAAAAATLDPESPEARALAAETRFMPVGAIHRAFKGRRLAAVQAWDPQAAAAVRAARAEKLLRRTRIAGKTRTTGAPMLAAASSAKRP 762
++RP+SA +A +V AAA + A +AAETR MPVG IHRAFKGRRLAAVQAWDP AAAAVRA RAEK+LRR + G+T T M AAA + +RP
Sbjct: 362 DQRPKSANAAAASVNAAAGA---KFSSAEDVAAETRLMPVGVIHRAFKGRRLAAVQAWDPLAAAAVRAERAEKMLRRAFL-GRTGTNSREMPAAAPARRRP 458
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-02_000240.1 |
Exons | 5 |
Model size | 1419 |
Cds size | 1419 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815720.4821699-CDS-L-elsbetiae_contig1729:20518..21004 | 1622815720.4821699-CDS-L-elsbetiae_contig1729:20518..21004 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1729 20519..21004 + |
1691683058.9076328-CDS-L-elsbetiae_contig1729:20518..21004 | 1691683058.9076328-CDS-L-elsbetiae_contig1729:20518..21004 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1729 20519..21004 + |
1622815720.4995792-CDS-L-elsbetiae_contig1729:21508..21942 | 1622815720.4995792-CDS-L-elsbetiae_contig1729:21508..21942 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1729 21509..21942 + |
1691683058.9200025-CDS-L-elsbetiae_contig1729:21508..21942 | 1691683058.9200025-CDS-L-elsbetiae_contig1729:21508..21942 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1729 21509..21942 + |
1622815720.510114-CDS-L-elsbetiae_contig1729:21963..22014 | 1622815720.510114-CDS-L-elsbetiae_contig1729:21963..22014 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1729 21964..22014 + |
1691683058.9299831-CDS-L-elsbetiae_contig1729:21963..22014 | 1691683058.9299831-CDS-L-elsbetiae_contig1729:21963..22014 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1729 21964..22014 + |
1622815720.5220401-CDS-L-elsbetiae_contig1729:22748..23039 | 1622815720.5220401-CDS-L-elsbetiae_contig1729:22748..23039 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1729 22749..23039 + |
1691683058.9405568-CDS-L-elsbetiae_contig1729:22748..23039 | 1691683058.9405568-CDS-L-elsbetiae_contig1729:22748..23039 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1729 22749..23039 + |
1622815720.5325847-CDS-L-elsbetiae_contig1729:23731..23888 | 1622815720.5325847-CDS-L-elsbetiae_contig1729:23731..23888 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1729 23732..23888 + |
1691683058.9553208-CDS-L-elsbetiae_contig1729:23731..23888 | 1691683058.9553208-CDS-L-elsbetiae_contig1729:23731..23888 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1729 23732..23888 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1729.4827.1 >prot_L-elsbetiae_contig1729.4827.1 ID=prot_L-elsbetiae_contig1729.4827.1|Name=mRNA_L-elsbetiae_contig1729.4827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=473bp
MYLASMGQLKHKRTRNTIAAEPTPRSSCASSAGPATAAAAAAASGPSAAR RNTRNNGANHGSDPVSQGATKFECVGRSALAKANNSEANPVEPVEPGHDK RSPKIVGDSSLPLFSAAHRKEAGSDRDDRSASAPLFTRRPRARAASSTRG KLENRRPRSAGPSAGAVAAAAATLDPESPEARALAAETRFMPVGAIHRAF KGRRLAAVQAWDPQAAAAVRAARAEKLLRRTRIAGKTRTTGAPMLAAASS AKRPLQGAAAAAAAAAAAVLDSRNEHKALLCPDERGGRRRIGPSSARRRS DQAHGNRSGEVVDWCGRNALIKDFFPSPPKLLDVAIRFCCLRERARQELG VVSAIEEAADGGSATGSEQGDSEEPDEPKRAPCSCRPGTATGSSGTLSTA RASTAAGYSSRGSGSTSGRATCSASSSDGIAAEERRARLLAELKALRRRM EDAEGLLREVDSSLLRPKPKKR* back to topmRNA from alignment at L-elsbetiae_contig1729:20519..23888+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1729.4827.1 ID=mRNA_L-elsbetiae_contig1729.4827.1|Name=mRNA_L-elsbetiae_contig1729.4827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3370bp|location=Sequence derived from alignment at L-elsbetiae_contig1729:20519..23888+ (Laminarionema elsbetiae ELsaHSoW15) ATGTATCTGGCTTCCATGGGACAGCTCAAGCACAAGAGGACGCGGAACAC
CATCGCCGCCGAGCCCACGCCTCGCTCCTCCTGCGCTTCCAGCGCTGGCC
CGGCAACAGCAGCAGCGGCCGCAGCGGCTTCCGGCCCCAGCGCTGCCAGA
CGCAACACCCGCAACAACGGCGCGAATCACGGTTCTGACCCCGTGTCCCA
GGGGGCGACAAAATTTGAGTGTGTAGGAAGGAGCGCACTAGCCAAAGCGA
ACAACTCAGAGGCAAACCCGGTCGAGCCTGTAGAACCTGGACACGACAAG
AGGAGCCCCAAGATTGTTGGTGACTCGTCACTCCCGTTATTTTCGGCGGC
CCATCGAAAAGAAGCCGGTTCCGACCGCGACGATCGATCGGCTTCAGCAC
CCCTATTCACCAGAAGGCCCAGGGCGAGAGCGGCATCGTCGACTCGCGGA
AAGCTCGAAAACCGTCGCCCTCGTTCTGCCGGCCCGGTGAGGCGTCCACC
GCCGCGATCACCCGGCGTCGGCGCGGTGCACCGCGACACTCCGGACGGCC
CCGCCGCCGCGGAGCGGGCGGCAAGAGACGTTCCTCTTCACGTCGGCCCA
GAAATCGCCGTCGTTTCATCTGCCGACACCCGCGGCGACCGCGGAGAACG
ACCGGCGCCCGCACGGCGCCGGCCAGCATCAGCGGGGGGAGTTGCGCTGG
AAGCAAAGCGCTGTTGGGCAGCGCAGCGGAGCACGGCCAGGGTCGTTCAC
CGAGGGTCCGGTCGCCACAGGCACGGTGGCGGAGGTAGGAACGGTGGTCG
GGGTCGCGGTGGCCGTGACGTCGACCGCAAGGGCGGGGGAATAGCGCACT
CGACATCGAAAGCAAGCCTATCGGGCGGCCAATCGACCGCCCGCACGACC
CAAGGGTCGTTCGTGGAAAGCGTCATCAAGAGCGCATGCCCCTTCGCCGA
CTTCAACTTCATCGGCACCAATTCCAAAGCGCGACCAAAGAGCGCTGGCG
CCGTCGCCGCCGCCGCCGCCACCCTTGACCCCGAGTCCCCCGAAGCCCGC
GCCCTCGCAGCGGAGACTCGGTTCATGCCGGTCGGGGCCATCCACAGGGC
CTTCAAGGGACGTCGCCTGGCCGCGGTGCAGGCGTGGGACCCGCAAGCTG
CCGCCGCTGTCCGAGCCGCCAGGGCTGAGAAGTTGCTTCGGCGAACCCGC
ATCGCGGGCAAGACTAGGACCACCGGCGCTCCGATGCTGGCGGCAGCATC
CTCGGCTAAGAGACCTCTGCAGGGGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGTCTTAGATAGCAGAAACGAACACAAGGCGCTCCTTTGTCCT
GACGAGCGTGGAGGTAGACGGCGAATAGGACCTTCGTCTGCTCGACGACG
GAGCGATCAGGCCCACGGAAACAGGTACGGATAGGGGAAGTACAGGAGTG
GGGAGGTGGTGGACTGGTGTGGCAGGAACGCTTTGATAAAAGACTTGTTG
GCCGACCTCGCAAATCTTTGCAGGGGAGATGTTGAACTCTTCTGATATTT
TAGGTTGTTTTTCTGCTCGCTTAGCCAAATATTACGTCACTGTATGGAAT
ACCGTTTCAACCCCATATCAAGTCCTTGCTCTAGTGTGGGGTAGGTTCCA
TCTTTAATTCATTGTTTATTTTTAAAAGACCCACAGGTAAGAGATGTCAC
TGCTGTTGAGCATTTCATTTTTTGACCTTTGGCGGTAGTACAACGCCCCC
GAATATCTTAGAATATATCGTCTCGGATGTGCATCTGTGGAGCTCCGACA
TGGTTTTGGTTGCAGGATGTTCCTTGAACAGCAGGTCTGAATGTACTTGT
TCGGAGGGGAGCCAAGATGTGCTCATGGCCCCAAAGGGAATTACGGCTAT
GACTTTATTGGCTGCTTGCTGGAAACTAGAAATACCCTTCCCGTTTTGAG
GTGCCCAGCCCTCGCTTCACAACTGCGTTTGCCGTATCGTTAGTCGGGTT
TTGTCGAGCTGATCGTCGGCATTTTTTCAGGTTTCAGGGTGCTTGTTTCT
CGCGATAGTTGGTTGGTCGCAGCCATGCGGGCGAATGTGACGTGCTAGCC
CCCAAGTGAAACACTGGAGGCATGCATCTTTACCACAGAAGCACTCTTGG
ACGACCCACCAGTGACGAGGTTGTCGGCGCAGAGACCGCGGCAGCCTCCC
CCCTGCTCAAAGACAGCTAAACACCGACAGCTTCCCCTCCCCCCCTAAAC
TACTTGACGTCGCCATTCGTTTCTGCTGTCTCAGAGAACGAGCCCGGCAG
GAGTTGGGGGTCGTCTCTGCGATCGAGGAGGCCGCAGACGGGGGCTCCGC
GACTGGGAGCGAGCAGGGTGACTCCGAGGAGCCGGACGAGCCAAAGCGGG
CGCCTTGCTCCTGCCGTCCGGGCACCGCCACCGGCAGCAGCGGTACTCTG
AGCACCGCGCGGGCGTCCACCGCGGCGGGTTACTCTTCCCGCGGGAGCGG
CAGCACGAGCGGGCGCGCTACGTCACGACGGTGAGCGGCCTCGGCCATGT
GGAAGAGGCATTTTACGCCAGAGCTTTGTCGTCTTCGATGTCGCCGACCG
ACGTCATGCGTGGCATCTAAGCCATGAAAGTGGGGCCAGAATTGTTTGCG
TTTTATCTCTCGTCGAGAATGATATTCTTGAGGTGGCCATCAAGAAACCC
TGTGTTCAGCGCGGTTGTAACTCACACTCGGATGGTGTCGCGCCGTGAGT
CGGCTCCTGTTCCAATCTGACGATTCAGGGTTGCTACCCACTTTCTGCTC
TACAACGCGCTTTCGAGACTGCCTTTCGCCCATACAGTGTAGATGACTTT
TCGCGCTCCCCGCGCCAGAGCAGAACCCCCGACCCCTCGGACAGCCCTAC
TTTCCTTCAAGTCTGATCCGTCCGCGGAGACGCTTCGCATCTTGGACCAG
GTGGTCTTTGTTCGTGAAGTGAAAATCACAAAATGCGTAAGGCATTCAGC
CGTCCGAGATGGATGCTCTAATGCTCCCGACGCTCAGACTTCTCTGCAAA
AGGCAGACTGCACCTATTCGCCGGGCCAGCAGCAGCAGGCAGCCGTGCCG
AAGCCTTGTTATTTCATCCTTCAATGGTTTCGTCGGATGTTCCGGTGGAT
GGTGCTTAATTCTGATGTTCGAACCGCTGTGTGCAGGAGTGCATCCACGC
GTCACAGCTACAGCTGCAGCGCGTCTAGCTCGGACGGGATAGCCGCCGAG
GAGAGGCGGGCCAGGCTGCTGGCGGAGCTGAAAGCCCTTCGGAGGCGTAT
GGAAGACGCGGAGGGCCTGCTGCGAGAGGTGGACAGTTCTCTGCTGCGGC
CGAAACCGAAAAAAAGGTGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1729:20519..23888+ >mRNA_L-elsbetiae_contig1729.4827.1 ID=mRNA_L-elsbetiae_contig1729.4827.1|Name=mRNA_L-elsbetiae_contig1729.4827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2838bp|location=Sequence derived from alignment at L-elsbetiae_contig1729:20519..23888+ (Laminarionema elsbetiae ELsaHSoW15) ATGTATCTGGCTTCCATGGGACAGCTCAAGCACAAGAGGACGCGGAACAC CATCGCCGCCGAGCCCACGCCTCGCTCCTCCTGCGCTTCCAGCGCTGGCC CGGCAACAGCAGCAGCGGCCGCAGCGGCTTCCGGCCCCAGCGCTGCCAGA CGCAACACCCGCAACAACGGCGCGAATCACGGTTCTGACCCCGTGTCCCA GGGGGCGACAAAATTTGAGTGTGTAGGAAGGAGCGCACTAGCCAAAGCGA ACAACTCAGAGGCAAACCCGGTCGAGCCTGTAGAACCTGGACACGACAAG AGGAGCCCCAAGATTGTTGGTGACTCGTCACTCCCGTTATTTTCGGCGGC CCATCGAAAAGAAGCCGGTTCCGACCGCGACGATCGATCGGCTTCAGCAC CCCTATTCACCAGAAGGCCCAGGGCGAGAGCGGCATCGTCGACTCGCGGA AAGCTCGAAAACCGTCGCCCTCGTTCTGCCGGCCCGATGTATCTGGCTTC CATGGGACAGCTCAAGCACAAGAGGACGCGGAACACCATCGCCGCCGAGC CCACGCCTCGCTCCTCCTGCGCTTCCAGCGCTGGCCCGGCAACAGCAGCA GCGGCCGCAGCGGCTTCCGGCCCCAGCGCTGCCAGACGCAACACCCGCAA CAACGGCGCGAATCACGGTTCTGACCCCGTGTCCCAGGGGGCGACAAAAT TTGAGTGTGTAGGAAGGAGCGCACTAGCCAAAGCGAACAACTCAGAGGCA AACCCGGTCGAGCCTGTAGAACCTGGACACGACAAGAGGAGCCCCAAGAT TGTTGGTGACTCGTCACTCCCGTTATTTTCGGCGGCCCATCGAAAAGAAG CCGGTTCCGACCGCGACGATCGATCGGCTTCAGCACCCCTATTCACCAGA AGGCCCAGGGCGAGAGCGGCATCGTCGACTCGCGGAAAGCTCGAAAACCG TCGCCCTCGTTCTGCCGGCCCGAGCGCTGGCGCCGTCGCCGCCGCCGCCG CCACCCTTGACCCCGAGTCCCCCGAAGCCCGCGCCCTCGCAGCGGAGACT CGGTTCATGCCGGTCGGGGCCATCCACAGGGCCTTCAAGGGACGTCGCCT GGCCGCGGTGCAGGCGTGGGACCCGCAAGCTGCCGCCGCTGTCCGAGCCG CCAGGGCTGAGAAGTTGCTTCGGCGAACCCGCATCGCGGGCAAGACTAGG ACCACCGGCGCTCCGATGCTGGCGGCAGCATCCTCGGCTAAGAGACCTCT GCAGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTCTTAGATA GCAGAAACGAACACAAGGCGCTCCTTTGTCCTGACGAGCGTGGAGGTAGA CGGCGAATAGGACCTTCGTCTGCTCGACGACGGAGCGATCAGGCCCACGG AAACAGAGCGCTGGCGCCGTCGCCGCCGCCGCCGCCACCCTTGACCCCGA GTCCCCCGAAGCCCGCGCCCTCGCAGCGGAGACTCGGTTCATGCCGGTCG GGGCCATCCACAGGGCCTTCAAGGGACGTCGCCTGGCCGCGGTGCAGGCG TGGGACCCGCAAGCTGCCGCCGCTGTCCGAGCCGCCAGGGCTGAGAAGTT GCTTCGGCGAACCCGCATCGCGGGCAAGACTAGGACCACCGGCGCTCCGA TGCTGGCGGCAGCATCCTCGGCTAAGAGACCTCTGCAGGGGGCGGCGGCG GCGGCGGCGGCGGCGGCGGCGGCGGTCTTAGATAGCAGAAACGAACACAA GGCGCTCCTTTGTCCTGACGAGCGTGGAGGTAGACGGCGAATAGGACCTT CGTCTGCTCGACGACGGAGCGATCAGGCCCACGGAAACAGGAGTGGGGAG GTGGTGGACTGGTGTGGCAGGAACGCTTTGATAAAAGACTTGAGTGGGGA GGTGGTGGACTGGTGTGGCAGGAACGCTTTGATAAAAGACTTCTTCCCCT CCCCCCCTAAACTACTTGACGTCGCCATTCGTTTCTGCTGTCTCAGAGAA CGAGCCCGGCAGGAGTTGGGGGTCGTCTCTGCGATCGAGGAGGCCGCAGA CGGGGGCTCCGCGACTGGGAGCGAGCAGGGTGACTCCGAGGAGCCGGACG AGCCAAAGCGGGCGCCTTGCTCCTGCCGTCCGGGCACCGCCACCGGCAGC AGCGGTACTCTGAGCACCGCGCGGGCGTCCACCGCGGCGGGTTACTCTTC CCGCGGGAGCGGCAGCACGAGCGGGCGCGCTACCTTCCCCTCCCCCCCTA AACTACTTGACGTCGCCATTCGTTTCTGCTGTCTCAGAGAACGAGCCCGG CAGGAGTTGGGGGTCGTCTCTGCGATCGAGGAGGCCGCAGACGGGGGCTC CGCGACTGGGAGCGAGCAGGGTGACTCCGAGGAGCCGGACGAGCCAAAGC GGGCGCCTTGCTCCTGCCGTCCGGGCACCGCCACCGGCAGCAGCGGTACT CTGAGCACCGCGCGGGCGTCCACCGCGGCGGGTTACTCTTCCCGCGGGAG CGGCAGCACGAGCGGGCGCGCTACCTGCAGCGCGTCTAGCTCGGACGGGA TAGCCGCCGAGGAGAGGCGGGCCAGGCTGCTGGCGGAGCTGAAAGCCCTT CGGAGGCGTATGGAAGACGCGGAGGGCCTGCTGCGAGAGGTGGACAGTTC TCTGCTGCGGCCGAAACCGAAAAAAAGGTGACTGCAGCGCGTCTAGCTCG GACGGGATAGCCGCCGAGGAGAGGCGGGCCAGGCTGCTGGCGGAGCTGAA AGCCCTTCGGAGGCGTATGGAAGACGCGGAGGGCCTGCTGCGAGAGGTGG ACAGTTCTCTGCTGCGGCCGAAACCGAAAAAAAGGTGA back to top
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