mRNA_L-elsbetiae_contig1729.4826.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1729.4826.1
Unique NamemRNA_L-elsbetiae_contig1729.4826.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1729.4826.1 vs. uniprot
Match: A0A6H5KGB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB2_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 5.500e-46
Identity = 153/363 (42.15%), Postives = 178/363 (49.04%), Query Frame = 2 
Query:   20 GTSSVQVPARHLGSSGLSLSSTDDRR-------RRPTGAMELRRAVEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALRACVGAGEWDRAAALLVDMEGSGATADVDVLREIKAAGGXXXXXXXARLQDDG-LTCDSSIS-SSDVXXXXXXXXXXXXXXXXXXAAGMHTVAVDADIDWPSRRPAHDCCD--------GGSRXXXXXXXXXXEDSESLMSFDPFSVGPITSNASSINXXXXXXXXXXXXXXXXXXXXXXXWPSRRPTSXXXXXXXXXXXXXXXXXXXRSSARRSLGNVSWGHESQERWHKHEHLLQHENDTTGPHSGAARLGSGAPVLGKAGAGWLSAKAAPFAGSWGDD 1057
            GT  VQ         GLSL+ST DRR       RRPT AMELRRA EVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVAL+AC GAGEW RAAAL+ DM+GSGA  D  ++ EI+AAG          ++DDG L+CDS    SS +                   A MHT A  AD+ WPSRRP     D        GGS     XXXXXX            S G  T+ + S                               +  XXXXXXXXX         R S+  SLG+++WG     RW  H    + +N ++   +     G     L      W S  +A FAGSWGDD
Sbjct:   15 GTVDVQQVGGRRCMGGLSLASTVDRRKRDGVDARRPTAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAG---DKTGVIAVEDDGNLSCDSGGDVSSVISGVARNKGGGSGGGIQGSVASMHTAAFGADVAWPSRRPTQTQDDQAQRGSSSGGSGSDDLXXXXXXXXXXXXXXXXXNSNGGRTATSHS-------------------------------SHSXXXXXXXXXGDEYGNAATRGSSEGSLGSIAWGGR---RWRSHHQETEDKNASSASPATRGARGVNEEAL----PAWPSVASATFAGSWGDD 336
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BLAST of mRNA_L-elsbetiae_contig1729.4826.1 vs. uniprot
Match: D7G7H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H2_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 5.380e-38
Identity = 93/172 (54.07%), Postives = 106/172 (61.63%), Query Frame = 2 
Query:   65 GLSLSSTDDRR-------RRPTGAMELRRAVEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALRACVGAGEWDRAAALLVDMEGSGATADVDVLREIKAAGGXXXXXXXARLQDDGLTCDSSISSSDVXXXXXXXXXXXXXXXXXXAAGMHTVAVDADIDWPSRRPAH 559
            GLSL+ST DRR       RRPT AMEL+RA EVQKCADKGWKSALICLGNMRKGGVAPGS+AYNVAL+AC GAGEW RAAAL+ DM+GSGA  D  ++ EI+AAG            +D L+CDS    S V                    G  +     D  WPSRRP +
Sbjct:   30 GLSLASTVDRRKKDGVDARRPTAAMELKRAAEVQKCADKGWKSALICLGNMRKGGVAPGSSAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDETIVAEIRAAGDNVVVMELG--DNDDLSCDSGGDVSSVLSGAARNK------------GGESGGGIQDAAWPSRRPTN 187
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1729.4826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGB2_9PHAE5.500e-4642.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7H2_ECTSI5.380e-3854.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1729contigL-elsbetiae_contig1729:6963..9256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000260.1
Exons3
Model size1635
Cds size1053
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1729.4826.1prot_L-elsbetiae_contig1729.4826.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1729 6970..8681 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.390063-UTR-L-elsbetiae_contig1729:6962..69691622815720.390063-UTR-L-elsbetiae_contig1729:6962..6969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1729 6963..6969 +
1691683058.8451-UTR-L-elsbetiae_contig1729:6962..69691691683058.8451-UTR-L-elsbetiae_contig1729:6962..6969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1729 6963..6969 +
1622815720.4424314-UTR-L-elsbetiae_contig1729:8681..92561622815720.4424314-UTR-L-elsbetiae_contig1729:8681..9256Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1729 8682..9256 +
1691683058.8945456-UTR-L-elsbetiae_contig1729:8681..92561691683058.8945456-UTR-L-elsbetiae_contig1729:8681..9256Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1729 8682..9256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.40085-CDS-L-elsbetiae_contig1729:6969..71221622815720.40085-CDS-L-elsbetiae_contig1729:6969..7122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1729 6970..7122 +
1691683058.8567536-CDS-L-elsbetiae_contig1729:6969..71221691683058.8567536-CDS-L-elsbetiae_contig1729:6969..7122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1729 6970..7122 +
1622815720.4181259-CDS-L-elsbetiae_contig1729:7724..80261622815720.4181259-CDS-L-elsbetiae_contig1729:7724..8026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1729 7725..8026 +
1691683058.873142-CDS-L-elsbetiae_contig1729:7724..80261691683058.873142-CDS-L-elsbetiae_contig1729:7724..8026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1729 7725..8026 +
1622815720.4305382-CDS-L-elsbetiae_contig1729:8083..86811622815720.4305382-CDS-L-elsbetiae_contig1729:8083..8681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1729 8084..8681 +
1691683058.8823142-CDS-L-elsbetiae_contig1729:8083..86811691683058.8823142-CDS-L-elsbetiae_contig1729:8083..8681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1729 8084..8681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1729.4826.1

>prot_L-elsbetiae_contig1729.4826.1 ID=prot_L-elsbetiae_contig1729.4826.1|Name=mRNA_L-elsbetiae_contig1729.4826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=351bp
MPQAGTSSVQVPARHLGSSGLSLSSTDDRRRRPTGAMELRRAVEVQKCAD
KGWKSALICLGNMRKGGVAPGSAAYNVALRACVGAGEWDRAAALLVDMEG
SGATADVDVLREIKAAGGAGAGAGAARLQDDGLTCDSSISSSDVSVAAAA
AARNRGGGGGGSAAGMHTVAVDADIDWPSRRPAHDCCDGGSRGGGGGGGG
GNEDSESLMSFDPFSVGPITSNASSINSSGSGSSGSIAGMHTVADGADGA
WPSRRPTSDGSSSRSGGGGGGDGGDGGRSSARRSLGNVSWGHESQERWHK
HEHLLQHENDTTGPHSGAARLGSGAPVLGKAGAGWLSAKAAPFAGSWGDD
*
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mRNA from alignment at L-elsbetiae_contig1729:6963..9256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1729.4826.1 ID=mRNA_L-elsbetiae_contig1729.4826.1|Name=mRNA_L-elsbetiae_contig1729.4826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2294bp|location=Sequence derived from alignment at L-elsbetiae_contig1729:6963..9256+ (Laminarionema elsbetiae ELsaHSoW15)
TACAAGCATGCCGCAGGCGGGTACAAGCAGTGTCCAGGTTCCGGCGCGGC
ACTTGGGGAGCTCGGGCTTATCGCTGAGCTCGACGGACGACAGGCGGCGG
CGGCCCACGGGGGCGATGGAGCTGCGCCGCGCGGTGGAAGTGCAGAAATG
CGCAGACAAGGTGCGTTGCTGTGCGGTTGATGACGGCACCGAGAACGCCG
AGAGCGGCATGGTGATGACGATGGCGATGAGCGCTCCCCAGAGATTGCTG
GCGGTTTCGGGATTGGTCCCTCCGAGTCTCGCCCGGTACTCGCCGCGCTC
GGTGAGTGCCACCTGCCTCCTCCGTGTGGTGGTGTGTGTGTCACAAAAAG
CTGGATAACACGGGCCCAACTGCTACAAGCTGTATACATACGTACATCAT
ACGTGCCTCCACAAACGCGACCCCCACGCATTCGTCGAACTCGGTGTGAA
GGCCCAGCACTAGATGATGTACACACGTATGTATGTATGTACCTCTTAAT
CCCCGTGTCTCACGGGCGTGCTACATGCCTACCTACCTACGTACTCCGTG
ATTCACCTACCCACCACCCACCCGCTCACCACCCACCCCCGGGCCCCCAG
GTTTATTTTTTTCCCTCCTCTGTTTCCATCGAACCGCGTGTGTAGTGCAT
CCCACCCAAACAAGCGCCGACCTTCTCCCCCCTCTGCCCGTGCTGAAGCG
CACTTGTTCTCCTCCGCCGTGCCCCTTGGTCGACTCTCTCTGGTGTGTCC
TCTTTGATTCAGGGGTGGAAGAGCGCGCTAATATGCCTGGGAAACATGCG
CAAGGGCGGGGTCGCGCCGGGTTCGGCCGCCTACAACGTCGCCCTCAGGG
CGTGCGTCGGGGCTGGGGAGTGGGACCGCGCGGCCGCCCTCCTGGTGGAC
ATGGAGGGCTCGGGCGCTACCGCCGACGTCGACGTCCTTCGGGAGATCAA
GGCAGCGGGGGGGGCGGGGGCGGGGGCAGGGGCAGCGAGGTTGCAGGACG
ACGGCCTGACGTGCGACTCTTCTATTTCTTCCTCTGATGTCTCGGTCGCC
GCCGCCGCCGCTGCGTTCGGCAGCAGGAGTGGCAGCAGCGGCAGCAGGAG
AAGCATGAGCAGCTTGGGCAGCCGGAACCGCGGCGGCGGCGGCGGTGGTT
CCGCTGCCGGCATGCACACGGTTGCCGTCGACGCGGACATCGATTGGCCC
AGCCGGCGGCCCGCCCACGACTGCTGCGACGGCGGTAGCCGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCAACGAGGACAGCGAGTCGTTGATGTCGTTCG
ACCCCTTTTCGGTCGGTCCGATCACGTCGAACGCCAGCAGCATTAACAGC
AGCGGGAGCGGCAGCAGCGGCTCCATCGCGGGCATGCACACGGTGGCAGA
CGGTGCAGACGGCGCGTGGCCCAGCCGGCGACCCACTAGCGACGGCAGCA
GCAGCAGGAGTGGCGGGGGCGGCGGCGGTGATGGCGGGGATGGCGGCAGG
AGTTCCGCTCGTCGATCGCTAGGCAACGTCTCGTGGGGGCACGAGAGCCA
AGAACGATGGCACAAACACGAACACCTTCTGCAGCACGAGAACGATACCA
CGGGGCCGCACTCCGGTGCAGCCAGGCTGGGGTCGGGGGCGCCGGTGCTG
GGTAAAGCGGGAGCGGGGTGGCTTTCTGCGAAGGCGGCTCCGTTTGCGGG
GAGCTGGGGGGACGATTGAGCCATTTATGTTTTTTTTTTGCGTTGTTCTT
GTTGGTTTGTTATCTCCTGTGTGTGCGTTTTGTGGACGGAAGCTTGTGTT
GTTGTAGACGTTTAAGGCGCGTATTCAGGTCGGGCCCTCGACGTATTGTG
AGTTTAGAATCTTACCGCTGTGTTGATCACGTCCTCGGGAGGAAAACGTC
TGTGTGTATTGTATCCGGAGCACACAATGTAGTGGCGTGATAGGTCTGGC
GACGCTTGCTACTGGTTTCGGTGTGCCTCTTTAGTCGCCAGGATTGGCGC
AAGACAGGCGCAGGCTGCATCGTGTTGCTGGTGTTAGCGAGTTTGTGTTG
TTGGGAGTGGGGGTCTGGGTGTTGCTTGACGTCACTTTTTGTTACTCTCC
CGGGGCATTGAAGTGGCTGCCGTTATGTTGCGGTGCCGTGTGAATCCTTC
GAAGCTCATGGTCTGAGATACAAAGTATGTTCGTGGCGTGGCCGGGGTAA
GCACGGTTAAATATTTTGTGTTTTGGTTGCGTGTACTTTGTGGTGTGGTC
TTCGCAACTGATCGGGATGCTTTTGAAGTTGGAGTCGGTGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1729:6963..9256+

>mRNA_L-elsbetiae_contig1729.4826.1 ID=mRNA_L-elsbetiae_contig1729.4826.1|Name=mRNA_L-elsbetiae_contig1729.4826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2106bp|location=Sequence derived from alignment at L-elsbetiae_contig1729:6963..9256+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCAGGCGGGTACAAGCAGTGTCCAGGTTCCGGCGCGGCACTTGGG
GAGCTCGGGCTTATCGCTGAGCTCGACGGACGACAGGCGGCGGCGGCCCA
CGGGGGCGATGGAGCTGCGCCGCGCGGTGGAAGTGCAGAAATGCGCAGAC
AAGATGCCGCAGGCGGGTACAAGCAGTGTCCAGGTTCCGGCGCGGCACTT
GGGGAGCTCGGGCTTATCGCTGAGCTCGACGGACGACAGGCGGCGGCGGC
CCACGGGGGCGATGGAGCTGCGCCGCGCGGTGGAAGTGCAGAAATGCGCA
GACAAGGGGTGGAAGAGCGCGCTAATATGCCTGGGAAACATGCGCAAGGG
CGGGGTCGCGCCGGGTTCGGCCGCCTACAACGTCGCCCTCAGGGCGTGCG
TCGGGGCTGGGGAGTGGGACCGCGCGGCCGCCCTCCTGGTGGACATGGAG
GGCTCGGGCGCTACCGCCGACGTCGACGTCCTTCGGGAGATCAAGGCAGC
GGGGGGGGCGGGGGCGGGGGCAGGGGCAGCGAGGTTGCAGGACGACGGCC
TGACGTGCGACTCTTCTATTTCTTCCTCTGATGTCTCGGTCGCCGCCGCC
GCCGCTGCGGGTGGAAGAGCGCGCTAATATGCCTGGGAAACATGCGCAAG
GGCGGGGTCGCGCCGGGTTCGGCCGCCTACAACGTCGCCCTCAGGGCGTG
CGTCGGGGCTGGGGAGTGGGACCGCGCGGCCGCCCTCCTGGTGGACATGG
AGGGCTCGGGCGCTACCGCCGACGTCGACGTCCTTCGGGAGATCAAGGCA
GCGGGGGGGGCGGGGGCGGGGGCAGGGGCAGCGAGGTTGCAGGACGACGG
CCTGACGTGCGACTCTTCTATTTCTTCCTCTGATGTCTCGGTCGCCGCCG
CCGCCGCTGCCCGGAACCGCGGCGGCGGCGGCGGTGGTTCCGCTGCCGGC
ATGCACACGGTTGCCGTCGACGCGGACATCGATTGGCCCAGCCGGCGGCC
CGCCCACGACTGCTGCGACGGCGGTAGCCGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCAACGAGGACAGCGAGTCGTTGATGTCGTTCGACCCCTTTTCG
GTCGGTCCGATCACGTCGAACGCCAGCAGCATTAACAGCAGCGGGAGCGG
CAGCAGCGGCTCCATCGCGGGCATGCACACGGTGGCAGACGGTGCAGACG
GCGCGTGGCCCAGCCGGCGACCCACTAGCGACGGCAGCAGCAGCAGGAGT
GGCGGGGGCGGCGGCGGTGATGGCGGGGATGGCGGCAGGAGTTCCGCTCG
TCGATCGCTAGGCAACGTCTCGTGGGGGCACGAGAGCCAAGAACGATGGC
ACAAACACGAACACCTTCTGCAGCACGAGAACGATACCACGGGGCCGCAC
TCCGGTGCAGCCAGGCTGGGGTCGGGGGCGCCGGTGCTGGGTAAAGCGGG
AGCGGGGTGGCTTTCTGCGAAGGCGGCTCCGTTTGCGGGGAGCTGGGGGG
ACGATTGACCGGAACCGCGGCGGCGGCGGCGGTGGTTCCGCTGCCGGCAT
GCACACGGTTGCCGTCGACGCGGACATCGATTGGCCCAGCCGGCGGCCCG
CCCACGACTGCTGCGACGGCGGTAGCCGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCAACGAGGACAGCGAGTCGTTGATGTCGTTCGACCCCTTTTCGGT
CGGTCCGATCACGTCGAACGCCAGCAGCATTAACAGCAGCGGGAGCGGCA
GCAGCGGCTCCATCGCGGGCATGCACACGGTGGCAGACGGTGCAGACGGC
GCGTGGCCCAGCCGGCGACCCACTAGCGACGGCAGCAGCAGCAGGAGTGG
CGGGGGCGGCGGCGGTGATGGCGGGGATGGCGGCAGGAGTTCCGCTCGTC
GATCGCTAGGCAACGTCTCGTGGGGGCACGAGAGCCAAGAACGATGGCAC
AAACACGAACACCTTCTGCAGCACGAGAACGATACCACGGGGCCGCACTC
CGGTGCAGCCAGGCTGGGGTCGGGGGCGCCGGTGCTGGGTAAAGCGGGAG
CGGGGTGGCTTTCTGCGAAGGCGGCTCCGTTTGCGGGGAGCTGGGGGGAC
GATTGA
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