mRNA_L-elsbetiae_contig17287.4825.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17287.4825.1
Unique NamemRNA_L-elsbetiae_contig17287.4825.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17287.4825.1 vs. uniprot
Match: D8LU41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU41_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 4.820e-54
Identity = 83/109 (76.15%), Postives = 96/109 (88.07%), Query Frame = 2 
Query:    2 TCRSLHEVERRFAAGEEAFPLQPTVDELRGNEDKAVHVDTETGVLRKTPRPGMGTIIANERVDKMTCYWEVKIEAFTGVRLEIGVATRRSIYGGGCNKDEVLARTNGLV 328
            TCRSL +++R FA+GEEAFPL+PTVDE  GNED AV VDTETGVLRKTPRPGMGTI+A ERVDKMTCYWEV I+ FTGVRLE+GVATRRSIY GGC+KDEV+ +  G++
Sbjct:   78 TCRSLRQIQRGFASGEEAFPLRPTVDERHGNEDNAVQVDTETGVLRKTPRPGMGTIMAKERVDKMTCYWEVNIQVFTGVRLEVGVATRRSIYRGGCDKDEVIFKVKGIL 186
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BLAST of mRNA_L-elsbetiae_contig17287.4825.1 vs. uniprot
Match: A0A6H5KUF2_9PHAE (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF2_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 2.310e-48
Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = 2 
Query:    2 TCRSLHEVERRFAAGEEAFPLQPTVDELRGNEDKAVHVDTETGVLRKTPRPGMGTIIANERVDKMTCYWEVKIEAFTGVRLEIGVATRRSIYGGGCNKDE 301
            TCRSL +++  F +GEEAFPL PTVDE  GNED AV VDTETG LRKTPRPGMGTI+A ERVDKMTCYWEVKI+ FTGVRLE+GVATRRSIY GGC+KDE
Sbjct:   79 TCRSLRQIQGGFVSGEEAFPLLPTVDERHGNEDNAVEVDTETGALRKTPRPGMGTIMAKERVDKMTCYWEVKIQVFTGVRLEVGVATRRSIYRGGCDKDE 178
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BLAST of mRNA_L-elsbetiae_contig17287.4825.1 vs. uniprot
Match: A0A835YJW0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJW0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.100e-9
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 2 
Query:  119 TETGVLRKTPRPGMGTIIANERVDKMTCYWEVKIEAFTGVRLEIGVATRRSIYGGG 286
            T+ G L +  RPG G I   +RVD ++CYWEV+++ FTG+RLEIGV +  ++  GG
Sbjct:   57 TDRGKLSRASRPGSGVITGRDRVDGLSCYWEVELQHFTGLRLEIGVCSAAAVPDGG 112
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17287.4825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LU41_ECTSI4.820e-5476.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUF2_9PHAE2.310e-4879.00B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YJW0_9STRA8.100e-948.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17287contigL-elsbetiae_contig17287:745..2396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size615
Cds size360
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17287.4825.1prot_L-elsbetiae_contig17287.4825.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17287 745..2141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.3287473-CDS-L-elsbetiae_contig17287:744..8101622815720.3287473-CDS-L-elsbetiae_contig17287:744..810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17287 745..810 +
1691683058.8073623-CDS-L-elsbetiae_contig17287:744..8101691683058.8073623-CDS-L-elsbetiae_contig17287:744..810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17287 745..810 +
1622815720.3386998-CDS-L-elsbetiae_contig17287:1157..12791622815720.3386998-CDS-L-elsbetiae_contig17287:1157..1279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17287 1158..1279 +
1691683058.8163166-CDS-L-elsbetiae_contig17287:1157..12791691683058.8163166-CDS-L-elsbetiae_contig17287:1157..1279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17287 1158..1279 +
1622815720.3489082-CDS-L-elsbetiae_contig17287:1969..21411622815720.3489082-CDS-L-elsbetiae_contig17287:1969..2141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17287 1970..2141 +
1691683058.824858-CDS-L-elsbetiae_contig17287:1969..21411691683058.824858-CDS-L-elsbetiae_contig17287:1969..2141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17287 1970..2141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.3589573-UTR-L-elsbetiae_contig17287:2141..23961622815720.3589573-UTR-L-elsbetiae_contig17287:2141..2396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17287 2142..2396 +
1691683058.8344376-UTR-L-elsbetiae_contig17287:2141..23961691683058.8344376-UTR-L-elsbetiae_contig17287:2141..2396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17287 2142..2396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17287.4825.1

>prot_L-elsbetiae_contig17287.4825.1 ID=prot_L-elsbetiae_contig17287.4825.1|Name=mRNA_L-elsbetiae_contig17287.4825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
NVPIPARGRETVCCWRRGVSSTADGRRAARKRGQGRPRGYRNRRVKEDAP
AGYGHHHCQRTSRQDDVLLGSKDRSFHWGSAGDRSSDTPQHIRRRMQQGR
GACAHEWFGPLFSSSVLCF*
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mRNA from alignment at L-elsbetiae_contig17287:745..2396+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17287.4825.1 ID=mRNA_L-elsbetiae_contig17287.4825.1|Name=mRNA_L-elsbetiae_contig17287.4825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1652bp|location=Sequence derived from alignment at L-elsbetiae_contig17287:745..2396+ (Laminarionema elsbetiae ELsaHSoW15)
AACGTGCCGATCCCTGCACGAGGTCGAGAGACGGTTTGCTGCTGGCGAAG
AGGCGTTTCCTCTACAGTGAGTCAAGCGGTCGGTTTCTCGAGTGGGTGTA
AGTGGGTGGGTGTATTTGGCGATGGGAAGGAAACAGAGTGGGGTCTACTC
GTGCGAGAGACGTGGGAGCGAACTGAGAGTCACGCCGGCCGCTGGTGGTG
CTGCGGCGAATGGCGCAAAAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCCCGCTTTAGCTTTGTCGGCCGTCTGTTGCTTCCTTTGCTGCT
TGTGCGTTACCACTGACTACCATGAGTAACTGCTGTTCCGAGCCCAGTGC
TGCCGCACACTCGTGACAATTGCTTGAACGTCTCCACTAAATCTGTCTTT
TTTTCAACAACAGGCCGACGGTCGACGAGCTGCGCGGAAACGAGGACAAG
GCCGTCCACGTGGATACAGAAACCGGCGTGTTAAGGAAGACGCCCCGGCC
GGGTATGGGCACCATCATTGCCAACGAACGAGTCGGTGAGGCAAGCCGCC
CAACCAGCCGTCAACGCATATGTATCAGCCATCGTTGTGCAACGCCGACC
CCGCTTTTTTCTCGCTCTCTGCTTCTTATTTTGTTCTTTTGTTGCGTAAA
ACGCCTCTGTCTCTTTTTGCCGGTCCACCCGAGGGGAGAGAGCCCCGAAC
AGGAAGGAGACTGTGTACAAAGCAAAAGGAGTAAAATGCCAAAACCCCTG
AACCGCTCTCGAGCTCGACTGATCCACCACAGCAGCGCGTGTTGTGGCAA
TAGACGTCGTGTTAATGAAAGGCTCTTGTCGTGATCCGTCTTTTGCCCTC
GTTTTGGACCCTGCGTCCCCAAAGTGGCAAAATTCCCTCTGCTCACAGCA
GCACCTTTCATCTGTTTCTTGTGTTTATGGGGCATGATCCAAACAAACCA
CTTGCGATCCTCAATCCTCCCGATCTGTGTCGGTGCTTGCGTGGGTGTGC
TCTTGCGCACTCTGTAGCGGGAGCATCAACAGCGGTCGATAGCTAAAACT
GAGGGGGTCGGCTGCTGAGTGTCACCAAAAAGCCGGCGCGATCTCCTCCT
CCCTTGATCCCGTGCGTAGCGATGTCGCGAGGCTCATCCAAGCCCCCAAA
GAAACTTCCCTTCGATGGTTCTCTTAACGAGTTGTCCCCATGTGCACGTT
CCTGTACGCGTGGCGCCCTCTCCAGACAAGATGACGTGCTACTGGGAAGT
AAAGATAGAAGCTTTCACTGGGGTTCGGCTGGAGATAGGAGTAGCGACAC
GCCGCAGCATATACGGAGGAGGATGCAACAAGGACGAGGTGCTTGCGCGC
ACGAATGGTTTGGTCCCCTCTTTTCTTCTTCGGTTCTATGTTTTTGATTC
TCCTCTTTTTGTGGGGATGCATTGCGTCCTTCACGCACGTTGCTCCGTTG
ACGCTTCGAGATGGTGCCCCTCCACATGAAACAATACCGGAACCCGCTAG
ATATTGTTTTTGACGAGGCTCCAATACTGCTCGCACGTTTCACTTCAGGT
AGTGGCCGCATAGTTTTTCTCTGGCTACCATCGAGAACTCGACAAAACTC
GCATCGATTGATTTGCTTCGTTGCTTTAATCCCCCCTCCGCCTCGTGTCC
CC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17287:745..2396+

>mRNA_L-elsbetiae_contig17287.4825.1 ID=mRNA_L-elsbetiae_contig17287.4825.1|Name=mRNA_L-elsbetiae_contig17287.4825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig17287:745..2396+ (Laminarionema elsbetiae ELsaHSoW15)
AACGTGCCGATCCCTGCACGAGGTCGAGAGACGGTTTGCTGCTGGCGAAG
AGGCGTTTCCTCTACAAACGTGCCGATCCCTGCACGAGGTCGAGAGACGG
TTTGCTGCTGGCGAAGAGGCGTTTCCTCTACAGCCGACGGTCGACGAGCT
GCGCGGAAACGAGGACAAGGCCGTCCACGTGGATACAGAAACCGGCGTGT
TAAGGAAGACGCCCCGGCCGGGTATGGGCACCATCATTGCCAACGAACGA
GTCGGCCGACGGTCGACGAGCTGCGCGGAAACGAGGACAAGGCCGTCCAC
GTGGATACAGAAACCGGCGTGTTAAGGAAGACGCCCCGGCCGGGTATGGG
CACCATCATTGCCAACGAACGAGTCGACAAGATGACGTGCTACTGGGAAG
TAAAGATAGAAGCTTTCACTGGGGTTCGGCTGGAGATAGGAGTAGCGACA
CGCCGCAGCATATACGGAGGAGGATGCAACAAGGACGAGGTGCTTGCGCG
CACGAATGGTTTGGTCCCCTCTTTTCTTCTTCGGTTCTATGTTTTTGAAC
AAGATGACGTGCTACTGGGAAGTAAAGATAGAAGCTTTCACTGGGGTTCG
GCTGGAGATAGGAGTAGCGACACGCCGCAGCATATACGGAGGAGGATGCA
ACAAGGACGAGGTGCTTGCGCGCACGAATGGTTTGGTCCCCTCTTTTCTT
CTTCGGTTCTATGTTTTTGA
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