mRNA_L-elsbetiae_contig17286.4824.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17286.4824.1
Unique NamemRNA_L-elsbetiae_contig17286.4824.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17286.4824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17286contigL-elsbetiae_contig17286:46..829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size784
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17286.4824.1prot_L-elsbetiae_contig17286.4824.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17286 192..617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.2715464-UTR-L-elsbetiae_contig17286:45..1911622815720.2715464-UTR-L-elsbetiae_contig17286:45..191Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17286 46..191 +
1691683058.7708404-UTR-L-elsbetiae_contig17286:45..1911691683058.7708404-UTR-L-elsbetiae_contig17286:45..191Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17286 46..191 +
1622815720.2931497-UTR-L-elsbetiae_contig17286:617..8291622815720.2931497-UTR-L-elsbetiae_contig17286:617..829Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17286 618..829 +
1691683058.7987916-UTR-L-elsbetiae_contig17286:617..8291691683058.7987916-UTR-L-elsbetiae_contig17286:617..829Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17286 618..829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.2824216-CDS-L-elsbetiae_contig17286:191..6171622815720.2824216-CDS-L-elsbetiae_contig17286:191..617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17286 192..617 +
1691683058.7849884-CDS-L-elsbetiae_contig17286:191..6171691683058.7849884-CDS-L-elsbetiae_contig17286:191..617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17286 192..617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17286.4824.1

>prot_L-elsbetiae_contig17286.4824.1 ID=prot_L-elsbetiae_contig17286.4824.1|Name=mRNA_L-elsbetiae_contig17286.4824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
MPNKGARRKTAHNNPSSATKKMEQRRELGCARTTPVALPPRDCLPRTKNP
NHQGKRLHGIYFQQASPEEICNTSDHSAWWHGAPTQQYTVSGGRRAAPGC
LRGEKTLAALALPRLGLPPPTPDVISKSKRTSTLLLLLCGG*
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mRNA from alignment at L-elsbetiae_contig17286:46..829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17286.4824.1 ID=mRNA_L-elsbetiae_contig17286.4824.1|Name=mRNA_L-elsbetiae_contig17286.4824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=784bp|location=Sequence derived from alignment at L-elsbetiae_contig17286:46..829+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGTCCGAAAAAGCAAAAGTGGCGTATTTTTGCGAAAACCCTCAAGGGA
AATACATAAATACCTGCACGGTCGGTCTTACGGCATTGACCGAATAATTG
CTTTTGACACGCCTGATCAAGTCGAAGATCATCGCAAACCCGATTGATGC
CCAACAAAGGCGCACGGAGAAAGACCGCTCATAACAACCCCTCTTCCGCC
ACAAAAAAAATGGAACAAAGAAGAGAGCTCGGGTGTGCACGAACGACGCC
TGTTGCCCTCCCTCCGCGCGACTGTTTACCGCGCACGAAAAACCCAAACC
ACCAAGGAAAACGCTTGCACGGCATTTATTTCCAGCAAGCAAGCCCCGAA
GAGATCTGCAACACTTCTGACCACTCGGCGTGGTGGCATGGCGCGCCCAC
GCAACAGTACACGGTTAGTGGCGGCCGGCGAGCCGCGCCCGGTTGCCTTC
GAGGTGAAAAGACGCTTGCCGCTCTCGCTCTGCCCCGGCTTGGACTCCCC
CCGCCCACCCCCGACGTTATCTCTAAAAGTAAGAGGACTTCTACACTACT
ACTGCTGCTGTGTGGTGGATAACAACACCGCAAAATCGCACGAATAAAAG
CTAGTTCGCTACAGCGGTCGTGCAAACTGACGACACTGAATTGTACGGCT
TATCGTACGGTTTCCAACAGAATTGTTTGTCTCTACGTCTTCTATGAGCA
GAGCGGCTAGAGAAGCAAGCACTCTTTTCATGCTCCCTATCTAGAGCTAT
TGCAAGCCAGAGTTCGAAACATCGTCGATCGTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17286:46..829+

>mRNA_L-elsbetiae_contig17286.4824.1 ID=mRNA_L-elsbetiae_contig17286.4824.1|Name=mRNA_L-elsbetiae_contig17286.4824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig17286:46..829+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCAACAAAGGCGCACGGAGAAAGACCGCTCATAACAACCCCTCTTC
CGCCACAAAAAAAATGGAACAAAGAAGAGAGCTCGGGTGTGCACGAACGA
CGCCTGTTGCCCTCCCTCCGCGCGACTGTTTACCGCGCACGAAAAACCCA
AACCACCAAGGAAAACGCTTGCACGGCATTTATTTCCAGCAAGCAAGCCC
CGAAGAGATCTGCAACACTTCTGACCACTCGGCGTGGTGGCATGGCGCGC
CCACGCAACAGTACACGGTTAGTGGCGGCCGGCGAGCCGCGCCCGGTTGC
CTTCGAGGTGAAAAGACGCTTGCCGCTCTCGCTCTGCCCCGGCTTGGACT
CCCCCCGCCCACCCCCGACGTTATCTCTAAAAGTAAGAGGACTTCTACAC
TACTACTGCTGCTGTGTGGTGGATAAATGCCCAACAAAGGCGCACGGAGA
AAGACCGCTCATAACAACCCCTCTTCCGCCACAAAAAAAATGGAACAAAG
AAGAGAGCTCGGGTGTGCACGAACGACGCCTGTTGCCCTCCCTCCGCGCG
ACTGTTTACCGCGCACGAAAAACCCAAACCACCAAGGAAAACGCTTGCAC
GGCATTTATTTCCAGCAAGCAAGCCCCGAAGAGATCTGCAACACTTCTGA
CCACTCGGCGTGGTGGCATGGCGCGCCCACGCAACAGTACACGGTTAGTG
GCGGCCGGCGAGCCGCGCCCGGTTGCCTTCGAGGTGAAAAGACGCTTGCC
GCTCTCGCTCTGCCCCGGCTTGGACTCCCCCCGCCCACCCCCGACGTTAT
CTCTAAAAGTAAGAGGACTTCTACACTACTACTGCTGCTGTGTGGTGGAT
AA
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