mRNA_L-elsbetiae_contig17273.4818.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17273.4818.1
Unique NamemRNA_L-elsbetiae_contig17273.4818.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17273.4818.1 vs. uniprot
Match: A0A8J2MDI5_9HEXA (Enolase-phosphatase E1 n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2MDI5_9HEXA)

HSP 1 Score: 57.4 bits (137), Expect = 9.970e-9
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1
Query:    4 SVSLEGVKVVLLDIEGTTTPITFVKDVLFPYAR 102
            S SLEG KV+LLDIEGTTT I+FVKDVLFPYAR
Sbjct:    4 SPSLEGAKVILLDIEGTTTSISFVKDVLFPYAR 36          
BLAST of mRNA_L-elsbetiae_contig17273.4818.1 vs. uniprot
Match: A0A8B7ZKC1_ACAPL (Enolase-phosphatase E1 n=3 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZKC1_ACAPL)

HSP 1 Score: 57.4 bits (137), Expect = 1.090e-8
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 1
Query:   13 LEGVKVVLLDIEGTTTPITFVKDVLFPYAR 102
            LE +KV+LLDIEGTTTPITFVKDVLFPY R
Sbjct:   21 LEAIKVILLDIEGTTTPITFVKDVLFPYVR 50          
BLAST of mRNA_L-elsbetiae_contig17273.4818.1 vs. uniprot
Match: A0A6H5JCG2_9PHAE (Probable methylthioribulose-1-phosphate dehydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG2_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.420e-8
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1
Query:    4 SVSLEGVKVVLLDIEGTTTPITFVKDVLFPYAR 102
            SVSL GVKV++LDIEGTTTPITFVK  LFPYA+
Sbjct:  693 SVSLAGVKVLVLDIEGTTTPITFVKQTLFPYAQ 725          
BLAST of mRNA_L-elsbetiae_contig17273.4818.1 vs. uniprot
Match: A0A6P5A097_BRABE (Enolase-phosphatase E1 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5A097_BRABE)

HSP 1 Score: 55.8 bits (133), Expect = 4.330e-8
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 VSVSLEGVKVVLLDIEGTTTPITFVKDVLFPYAR 102
            VS  L+GV VVLLDIEGTTTPITFVKD LFPY R
Sbjct:   32 VSSLLDGVSVVLLDIEGTTTPITFVKDELFPYVR 65          
BLAST of mRNA_L-elsbetiae_contig17273.4818.1 vs. uniprot
Match: D7FXI6_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI6_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.720e-8
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1
Query:    4 SVSLEGVKVVLLDIEGTTTPITFVKDVLFPYAR 102
            SVSL GVKV++LDIEGTTTPITFVK  LFPYA+
Sbjct:  269 SVSLVGVKVLVLDIEGTTTPITFVKQTLFPYAQ 301          
BLAST of mRNA_L-elsbetiae_contig17273.4818.1 vs. uniprot
Match: A0A8J9ZXY8_BRALA (ENOPH1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZXY8_BRALA)

HSP 1 Score: 54.7 bits (130), Expect = 1.130e-7
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 1
Query:   13 LEGVKVVLLDIEGTTTPITFVKDVLFPYAR 102
            L+GV VVLLDIEGTTTPITFVKD LFPY R
Sbjct:   36 LDGVTVVLLDIEGTTTPITFVKDELFPYVR 65          
BLAST of mRNA_L-elsbetiae_contig17273.4818.1 vs. uniprot
Match: A0A8J4UCN9_CLAMG (Enolase-phosphatase E1 n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4UCN9_CLAMG)

HSP 1 Score: 52.0 bits (123), Expect = 2.450e-7
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 1
Query:   16 EGVKVVLLDIEGTTTPITFVKDVLFPYAR 102
            E V V+LLDIEGTTTPITFVKDVLFPY +
Sbjct:    8 ENVSVLLLDIEGTTTPITFVKDVLFPYIK 36          
BLAST of mRNA_L-elsbetiae_contig17273.4818.1 vs. uniprot
Match: UPI0018D87D65 (enolase-phosphatase E1-like isoform X1 n=3 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D87D65)

HSP 1 Score: 53.5 bits (127), Expect = 3.040e-7
Identity = 23/28 (82.14%), Postives = 28/28 (100.00%), Query Frame = 1
Query:   13 LEGVKVVLLDIEGTTTPITFVKDVLFPY 96
            L+G++V++LDIEGTTTPITFVKDVLFPY
Sbjct:   71 LQGIEVIVLDIEGTTTPITFVKDVLFPY 98          
BLAST of mRNA_L-elsbetiae_contig17273.4818.1 vs. uniprot
Match: ENOPH_BRAFL (Enolase-phosphatase E1 n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=ENOPH_BRAFL)

HSP 1 Score: 52.8 bits (125), Expect = 5.530e-7
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1
Query:   13 LEGVKVVLLDIEGTTTPITFVKDVLFPY 96
            L+GV VVLLDIEGTTTPITFVKD LFPY
Sbjct:   31 LDGVSVVLLDIEGTTTPITFVKDELFPY 58          
BLAST of mRNA_L-elsbetiae_contig17273.4818.1 vs. uniprot
Match: UPI0001CBBC7D (enolase-phosphatase E1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBBC7D)

HSP 1 Score: 52.4 bits (124), Expect = 7.270e-7
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1
Query:   13 LEGVKVVLLDIEGTTTPITFVKDVLFPYAR 102
            L  VK ++LDIEGTTTPITFVKDVLFPY R
Sbjct:   18 LVNVKAIILDIEGTTTPITFVKDVLFPYIR 47          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17273.4818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2MDI5_9HEXA9.970e-984.85Enolase-phosphatase E1 n=1 Tax=Allacma fusca TaxID... [more]
A0A8B7ZKC1_ACAPL1.090e-886.67Enolase-phosphatase E1 n=3 Tax=Acanthaster planci ... [more]
A0A6H5JCG2_9PHAE3.420e-881.82Probable methylthioribulose-1-phosphate dehydratas... [more]
A0A6P5A097_BRABE4.330e-882.35Enolase-phosphatase E1 n=1 Tax=Branchiostoma belch... [more]
D7FXI6_ECTSI4.720e-881.82Haloacid dehalogenase-like hydrolase family protei... [more]
A0A8J9ZXY8_BRALA1.130e-786.67ENOPH1 protein n=1 Tax=Branchiostoma lanceolatum T... [more]
A0A8J4UCN9_CLAMG2.450e-782.76Enolase-phosphatase E1 n=1 Tax=Clarias magur TaxID... [more]
UPI0018D87D653.040e-782.14enolase-phosphatase E1-like isoform X1 n=3 Tax=Pat... [more]
ENOPH_BRAFL5.530e-789.29Enolase-phosphatase E1 n=2 Tax=Branchiostoma flori... [more]
UPI0001CBBC7D7.270e-780.00enolase-phosphatase E1-like n=1 Tax=Saccoglossus k... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17273contigL-elsbetiae_contig17273:98..202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.925475-CDS-L-elsbetiae_contig17273:97..2021622815719.925475-CDS-L-elsbetiae_contig17273:97..202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17273 98..202 -
1691683058.5697474-CDS-L-elsbetiae_contig17273:97..2021691683058.5697474-CDS-L-elsbetiae_contig17273:97..202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17273 98..202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17273.4818.1prot_L-elsbetiae_contig17273.4818.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17273 98..202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17273.4818.1

>prot_L-elsbetiae_contig17273.4818.1 ID=prot_L-elsbetiae_contig17273.4818.1|Name=mRNA_L-elsbetiae_contig17273.4818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=35bp
VSVSLEGVKVVLLDIEGTTTPITFVKDVLFPYAR*
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mRNA from alignment at L-elsbetiae_contig17273:98..202-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17273.4818.1 ID=mRNA_L-elsbetiae_contig17273.4818.1|Name=mRNA_L-elsbetiae_contig17273.4818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=105bp|location=Sequence derived from alignment at L-elsbetiae_contig17273:98..202- (Laminarionema elsbetiae ELsaHSoW15)
GTGTCCGTTTCTCTGGAAGGGGTGAAGGTGGTGCTGCTGGACATCGAGGG GACGACTACGCCGATCACGTTCGTCAAGGACGTCCTGTTCCCCTACGCTC GGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17273:98..202-

>mRNA_L-elsbetiae_contig17273.4818.1 ID=mRNA_L-elsbetiae_contig17273.4818.1|Name=mRNA_L-elsbetiae_contig17273.4818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig17273:98..202- (Laminarionema elsbetiae ELsaHSoW15)
GTGTCCGTTTCTCTGGAAGGGGTGAAGGTGGTGCTGCTGGACATCGAGGG
GACGACTACGCCGATCACGTTCGTCAAGGACGTCCTGTTCCCCTACGCTC
GGTGAGTGTCCGTTTCTCTGGAAGGGGTGAAGGTGGTGCTGCTGGACATC
GAGGGGACGACTACGCCGATCACGTTCGTCAAGGACGTCCTGTTCCCCTA
CGCTCGGTGA
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