mRNA_L-elsbetiae_contig1727.4816.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1727.4816.1
Unique NamemRNA_L-elsbetiae_contig1727.4816.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1727.4816.1 vs. uniprot
Match: A0A6H5KZ61_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ61_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.270e-42
Identity = 90/126 (71.43%), Postives = 96/126 (76.19%), Query Frame = 1 
Query:    1 MASNPRTIQLWRRCLRCCKEMEGAMGSYYHGFAREHIVAHREEDDPERLAHLLDKGEQNLRFVLRKYRMSEPRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQRGVMAGPGGESDGDSTWTPGR 378
            M  NPRTIQLWRRCLRCC+ MEGAMG+YYHGFAREHIVAHREEDD ER+ HLLDKGEQNLRFVLRKYRM+EPRP               XXXXXXXXXXXXXX +    AG G +S   STWTPGR
Sbjct:    1 MPPNPRTIQLWRRCLRCCRAMEGAMGNYYHGFAREHIVAHREEDDAERVEHLLDKGEQNLRFVLRKYRMTEPRPPESLGTPERTRTKKTXXXXXXXXXXXXXXXEAEGAAGWGNDS---STWTPGR 123
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BLAST of mRNA_L-elsbetiae_contig1727.4816.1 vs. uniprot
Match: A0A150GDR5_GONPE (Complex1_LYR_dom domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GDR5_GONPE)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-7
Identity = 24/67 (35.82%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 MASNPRTIQLWRRCLRCCKEMEGAMGSYYHGFAREHIVAHREEDDPERLAHLLDKGEQNLRFVLRKY 201
            M++    + L+R  LR  K +  +  +YY    R+H  +HR+E DPER+ H+L++  Q+ +++LRKY
Sbjct:    1 MSAPSTALALYRELLRQTKSLPKSTQTYYRHHIRQHYNSHRDEADPERVQHMLERARQDAQWILRKY 67
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BLAST of mRNA_L-elsbetiae_contig1727.4816.1 vs. uniprot
Match: C1E1Y2_MICCC (Complex1_LYR_dom domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E1Y2_MICCC)

HSP 1 Score: 50.1 bits (118), Expect = 1.020e-5
Identity = 21/60 (35.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   22 IQLWRRCLRCCKEMEGAMGSYYHGFAREHIVAHREEDDPERLAHLLDKGEQNLRFVLRKY 201
            +  +R   R  +++     SYY   ARE +VAHR+ED+PER+  ++ +  +++ +VL+KY
Sbjct:    6 LVFYREVCRAIRKLPKDTQSYYRVVAREKVVAHRDEDEPERIGKIIQRSREDVAWVLKKY 65
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BLAST of mRNA_L-elsbetiae_contig1727.4816.1 vs. uniprot
Match: D3BAM5_POLPP (Complex1_LYR_dom domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BAM5_POLPP)

HSP 1 Score: 50.1 bits (118), Expect = 1.310e-5
Identity = 24/69 (34.78%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:   10 NPRTIQLWRRCLRCCK-EMEGAMGSYYHGFAREHIVAHREEDDPERLAHLLDKGEQNLRFVLRKYRMSE 213
            NP++I L+R  +R    ++     +YY  F REH   H+ E DP  +  L++KG  NL ++++KY  +E
Sbjct:    5 NPKSIALYRTIVRAINTKLPKQAQNYYWAFTREHFAGHKGETDPRDIDLLIEKGYNNLDWIIKKYNATE 73
[Close]
BLAST of mRNA_L-elsbetiae_contig1727.4816.1 vs. uniprot
Match: A0A4D9DDY1_9STRA (Complex1_LYR_dom domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDY1_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.470e-5
Identity = 23/65 (35.38%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:   22 IQLWRRCLRCCKEMEGAMGS-YYHGFAREHIVAHREEDDPERLAHLLDKGEQNLRFVLRKYRMSE 213
            + L+RR LR  ++ +      YY  + R +I    +EDDPERL  LL KGE++  ++++KY + +
Sbjct:    8 VALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFDDEDDPERLQQLLQKGEEHRVWIMKKYHLKD 72
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1727.4816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KZ61_9PHAE1.270e-4271.43Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A150GDR5_GONPE2.270e-735.82Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
C1E1Y2_MICCC1.020e-535.00Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D3BAM5_POLPP1.310e-534.78Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A4D9DDY1_9STRA6.470e-535.38Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1727contigL-elsbetiae_contig1727:12476..13665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-00_007730.1
Exons3
Model size381
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1727.4816.1prot_L-elsbetiae_contig1727.4816.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1727 12476..13665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.6903691-CDS-L-elsbetiae_contig1727:12475..127421622815719.6903691-CDS-L-elsbetiae_contig1727:12475..12742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1727 12476..12742 -
1691683058.3997138-CDS-L-elsbetiae_contig1727:12475..127421691683058.3997138-CDS-L-elsbetiae_contig1727:12475..12742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1727 12476..12742 -
1622815719.703169-CDS-L-elsbetiae_contig1727:13234..132921622815719.703169-CDS-L-elsbetiae_contig1727:13234..13292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1727 13235..13292 -
1691683058.4117258-CDS-L-elsbetiae_contig1727:13234..132921691683058.4117258-CDS-L-elsbetiae_contig1727:13234..13292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1727 13235..13292 -
1622815719.7164228-CDS-L-elsbetiae_contig1727:13609..136651622815719.7164228-CDS-L-elsbetiae_contig1727:13609..13665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1727 13610..13665 -
1691683058.4200459-CDS-L-elsbetiae_contig1727:13609..136651691683058.4200459-CDS-L-elsbetiae_contig1727:13609..13665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1727 13610..13665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1727.4816.1

>prot_L-elsbetiae_contig1727.4816.1 ID=prot_L-elsbetiae_contig1727.4816.1|Name=mRNA_L-elsbetiae_contig1727.4816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MASNPRTIQLWRRCLRCCKEMEGAMGSYYHGFAREHIVAHREEDDPERLA
HLLDKGEQNLRFVLRKYRMSEPRPPEPPATPTTATRTTRRRRATTAPGAA
AERGQRGVMAGPGGESDGDSTWTPGR*
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mRNA from alignment at L-elsbetiae_contig1727:12476..13665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1727.4816.1 ID=mRNA_L-elsbetiae_contig1727.4816.1|Name=mRNA_L-elsbetiae_contig1727.4816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1190bp|location=Sequence derived from alignment at L-elsbetiae_contig1727:12476..13665- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTCAAATCCGCGCACCATCCAGCTCTGGCGTAGATGCCTACGGTG
CTGCAAGTGAGGCCGCACACTCTGTCTGGTGGTAGAGATCGTAGGTGGCT
AAAACTTGTTTCACGAGTCACACCGCAATCAACCTGCCGCGCGTACATTT
TTTTTTATTTTTTATTGTCTGCCCATTATTGGATTTTGTCGTCTGCCCCT
CTGGCCCCCATCCTCCACTTCTACTCTAGCCATACGACCCAACCGTACAC
ATGTTGTTGTGTTGTACTCGCTTGGCGCCGTGCGTGTTTTGCCCGGCACC
TTCGGATGACCGTTCGCTTCAATGGCCCTAAACACGTGCTTGTTGTTGCC
TTTCACGGGCTCCACCAACACAGGGAAATGGAAGGAGCGATGGGGAGCTA
CTACCATGGCTTCGCCAGGGAGCACATCGTGGTGAGGGTAGTATACCAAC
AATAAGAGCCGTCGTAGTGTGTGACTTCGGGCACTAGATACAGACTTGTC
TTAGGCTCGGAAGATAATCAGCCCCCTCATGCTGCCGGGGGGTTCGTGTG
AGTGTCAGTGAGAAGTCGCACCTGAGAACCTATCGCGCCCAGATGTTTCC
CCTGCGGCTGTATGAGCTGGTGGAAAGAAGGCTGAGTTCAGCAGAAGTCA
GCTATTTAGTTTCTAGGAGAGTAGACTTATACCAAAAGACTGCTGTTTTT
GAGTAGAGTGCGTCTTCCTTGTCAAAAAGGGCCCATTTTCCACAGGCATC
GTGTTTCATTTACTTCTTTTTGTTGCCGTCGTCCCGACGTGTAGGTGACG
GTCGGCGCCTGTGTACCACATTTGTTTTTCCCCTGTAGATACGCCAGAAA
GCCGCGAAAGACCGTTAATCCTTTCTTCGCTCTTTGCCATATCTACACAT
ACGTATACACACTCCCCCCGAAGGCCCACAGGGAAGAAGACGATCCAGAG
CGGCTGGCACACTTGCTGGACAAGGGCGAACAAAATCTGCGGTTTGTCCT
GCGGAAATACAGGATGTCCGAACCAAGGCCCCCTGAGCCCCCAGCAACAC
CGACCACAGCAACCAGGACGACGCGCCGGCGGCGCGCGACAACAGCGCCT
GGAGCGGCAGCAGAAAGGGGGCAGAGAGGAGTGATGGCAGGGCCGGGGGG
TGAGAGTGATGGCGATAGCACTTGGACTCCTGGCCGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1727:12476..13665-

>mRNA_L-elsbetiae_contig1727.4816.1 ID=mRNA_L-elsbetiae_contig1727.4816.1|Name=mRNA_L-elsbetiae_contig1727.4816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig1727:12476..13665- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTCAAATCCGCGCACCATCCAGCTCTGGCGTAGATGCCTACGGTG
CTGCAAATGGCTTCAAATCCGCGCACCATCCAGCTCTGGCGTAGATGCCT
ACGGTGCTGCAAGGAAATGGAAGGAGCGATGGGGAGCTACTACCATGGCT
TCGCCAGGGAGCACATCGTGGGAAATGGAAGGAGCGATGGGGAGCTACTA
CCATGGCTTCGCCAGGGAGCACATCGTGGCCCACAGGGAAGAAGACGATC
CAGAGCGGCTGGCACACTTGCTGGACAAGGGCGAACAAAATCTGCGGTTT
GTCCTGCGGAAATACAGGATGTCCGAACCAAGGCCCCCTGAGCCCCCAGC
AACACCGACCACAGCAACCAGGACGACGCGCCGGCGGCGCGCGACAACAG
CGCCTGGAGCGGCAGCAGAAAGGGGGCAGAGAGGAGTGATGGCAGGGCCG
GGGGGTGAGAGTGATGGCGATAGCACTTGGACTCCTGGCCGATGAGCCCA
CAGGGAAGAAGACGATCCAGAGCGGCTGGCACACTTGCTGGACAAGGGCG
AACAAAATCTGCGGTTTGTCCTGCGGAAATACAGGATGTCCGAACCAAGG
CCCCCTGAGCCCCCAGCAACACCGACCACAGCAACCAGGACGACGCGCCG
GCGGCGCGCGACAACAGCGCCTGGAGCGGCAGCAGAAAGGGGGCAGAGAG
GAGTGATGGCAGGGCCGGGGGGTGAGAGTGATGGCGATAGCACTTGGACT
CCTGGCCGATGA
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