mRNA_L-elsbetiae_contig17255.4813.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17255.4813.1
Unique NamemRNA_L-elsbetiae_contig17255.4813.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17255.4813.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.200e-24
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 153
            QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLV YTFYKN+LMAVPMAW
Sbjct: 1055 QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVAYTFYKNILMAVPMAW 1105
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BLAST of mRNA_L-elsbetiae_contig17255.4813.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.040e-23
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    4 AVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 153
            AVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLV YTFYKN+LMAVPMAW
Sbjct: 1194 AVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVAYTFYKNILMAVPMAW 1243
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BLAST of mRNA_L-elsbetiae_contig17255.4813.1 vs. uniprot
Match: A0A7S4DCU9_HETAK (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCU9_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 2.370e-17
Identity = 36/51 (70.59%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 153
            QAVN+SD+A+AQF++L+KL+L HGR NYRRMSKLV Y FYKN+LM++PM W
Sbjct:  272 QAVNSSDYAVAQFKYLRKLLLVHGRWNYRRMSKLVCYVFYKNILMSLPMFW 322
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BLAST of mRNA_L-elsbetiae_contig17255.4813.1 vs. uniprot
Match: D2W4U9_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W4U9_NAEGR)

HSP 1 Score: 77.0 bits (188), Expect = 1.570e-15
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 153
            QAVNASD+AI QFRFL++L+L HGR NYRR+SKLVVY FYKN+L  +   W
Sbjct:   18 QAVNASDYAIGQFRFLKRLLLVHGRWNYRRVSKLVVYVFYKNILFFLTQLW 68
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BLAST of mRNA_L-elsbetiae_contig17255.4813.1 vs. uniprot
Match: K3W6Q1_GLOUD (Phospholipid-transporting ATPase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6Q1_GLOUD)

HSP 1 Score: 77.4 bits (189), Expect = 2.570e-15
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 153
            QAVN+SD+AIAQFRFL++L+L HGR NYRRMS+LVVY FYKN+L      W
Sbjct:  860 QAVNSSDYAIAQFRFLERLLLVHGRWNYRRMSQLVVYMFYKNILFTAAQYW 910
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BLAST of mRNA_L-elsbetiae_contig17255.4813.1 vs. uniprot
Match: D2W2K7_NAEGR (Phospholipid-transporting ATPase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W2K7_NAEGR)

HSP 1 Score: 77.0 bits (188), Expect = 3.500e-15
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 153
            QAVNASD+AI QFRFL++L+L HGR NYRR+SKLVVY FYKN+L  +   W
Sbjct:  858 QAVNASDYAIGQFRFLKRLLLVHGRWNYRRVSKLVVYVFYKNILFFLTQLW 908
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BLAST of mRNA_L-elsbetiae_contig17255.4813.1 vs. uniprot
Match: A0A2D4BXB3_PYTIN (Phospholipid-transporting ATPase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXB3_PYTIN)

HSP 1 Score: 77.0 bits (188), Expect = 3.510e-15
Identity = 34/49 (69.39%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPM 147
            QAVNASD+AIAQFRFL++L+L HGR NYRR+SKL++Y+FYKNVL+ + +
Sbjct:  877 QAVNASDYAIAQFRFLERLLLVHGRFNYRRISKLILYSFYKNVLLVIAL 925
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BLAST of mRNA_L-elsbetiae_contig17255.4813.1 vs. uniprot
Match: A0A7S1FZ32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZ32_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.820e-15
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMA 150
            QA NASDFAIAQFR+L+ L+L HGR N++RMSK+V+YTFYKN+++ V MA
Sbjct:   47 QAANASDFAIAQFRYLETLLLVHGRWNFQRMSKVVLYTFYKNIVLIVLMA 96
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BLAST of mRNA_L-elsbetiae_contig17255.4813.1 vs. uniprot
Match: A0A7S2SIW9_9STRA (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIW9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.540e-15
Identity = 33/47 (70.21%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVVYTFYKNVLMAV 141
            QAVNASDFAIAQFRFL++L+L HGR NYRR SK+++Y+FYKN+++ V
Sbjct:  724 QAVNASDFAIAQFRFLERLLLIHGRWNYRRTSKVIIYSFYKNIVLVV 770
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BLAST of mRNA_L-elsbetiae_contig17255.4813.1 vs. uniprot
Match: A0A3R7MUY0_9STRA (Phospholipid-transporting ATPase n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MUY0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.540e-15
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 153
            QAVN+SD+AIAQFRFLQ+L+L HGR NYRRM++LV+Y FYKN+L      W
Sbjct:  605 QAVNSSDYAIAQFRFLQRLLLVHGRWNYRRMAQLVLYIFYKNILFTASQYW 655
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17255.4813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPG5_9PHAE2.200e-2496.08P-type phospholipid transporter n=1 Tax=Ectocarpus... [more]
D7FU18_ECTSI1.040e-2396.00Phospholipid-transporting ATPase, putative n=1 Tax... [more]
A0A7S4DCU9_HETAK2.370e-1770.59Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
D2W4U9_NAEGR1.570e-1568.63Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
K3W6Q1_GLOUD2.570e-1568.63Phospholipid-transporting ATPase n=1 Tax=Globispor... [more]
D2W2K7_NAEGR3.500e-1568.63Phospholipid-transporting ATPase n=1 Tax=Naegleria... [more]
A0A2D4BXB3_PYTIN3.510e-1569.39Phospholipid-transporting ATPase n=1 Tax=Pythium i... [more]
A0A7S1FZ32_9STRA4.820e-1568.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2SIW9_9STRA6.540e-1570.21Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
A0A3R7MUY0_9STRA6.540e-1566.67Phospholipid-transporting ATPase n=4 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17255contigL-elsbetiae_contig17255:581..736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue8.3e-20
Seed eggNOG ortholog2880.D7FU18
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.4234288-CDS-L-elsbetiae_contig17255:580..7361622815719.4234288-CDS-L-elsbetiae_contig17255:580..736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17255 581..736 +
1691683058.218981-CDS-L-elsbetiae_contig17255:580..7361691683058.218981-CDS-L-elsbetiae_contig17255:580..736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17255 581..736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17255.4813.1prot_L-elsbetiae_contig17255.4813.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17255 581..736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17255.4813.1

>prot_L-elsbetiae_contig17255.4813.1 ID=prot_L-elsbetiae_contig17255.4813.1|Name=mRNA_L-elsbetiae_contig17255.4813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMA
W*
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mRNA from alignment at L-elsbetiae_contig17255:581..736+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17255.4813.1 ID=mRNA_L-elsbetiae_contig17255.4813.1|Name=mRNA_L-elsbetiae_contig17255.4813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig17255:581..736+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCGTGAACGCCAGCGACTTCGCGATCGCGCAGTTCCGCTTCCTCCA
GAAGCTGATGCTGTTCCACGGCCGGCAGAACTACCGCCGCATGTCGAAGC
TCGTGGTGTACACCTTCTACAAGAATGTCCTCATGGCGGTGCCAATGGCC
TGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17255:581..736+

>mRNA_L-elsbetiae_contig17255.4813.1 ID=mRNA_L-elsbetiae_contig17255.4813.1|Name=mRNA_L-elsbetiae_contig17255.4813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig17255:581..736+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCGTGAACGCCAGCGACTTCGCGATCGCGCAGTTCCGCTTCCTCCA
GAAGCTGATGCTGTTCCACGGCCGGCAGAACTACCGCCGCATGTCGAAGC
TCGTGGTGTACACCTTCTACAAGAATGTCCTCATGGCGGTGCCAATGGCC
TGGTGACAGGCCGTGAACGCCAGCGACTTCGCGATCGCGCAGTTCCGCTT
CCTCCAGAAGCTGATGCTGTTCCACGGCCGGCAGAACTACCGCCGCATGT
CGAAGCTCGTGGTGTACACCTTCTACAAGAATGTCCTCATGGCGGTGCCA
ATGGCCTGGTGA
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