mRNA_L-elsbetiae_contig17234.4801.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17234.4801.1
Unique NamemRNA_L-elsbetiae_contig17234.4801.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17234.4801.1 vs. uniprot
Match: A0A6H5KIJ4_9PHAE (MazG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.240e-14
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   19 RSEKDKVANSLVQCFTVVLLLAERCNIDLPLSVQLKMKLNAKKYPVLIAKGSALKYDAY 195
            R+EKD V   +      +LLLAERCN+DL LSV LK+KLNAKKYP ++ +GSALKYDAY
Sbjct:   82 RTEKDVVVLEMGSAAACLLLLAERCNVDLGLSVDLKVKLNAKKYPAVLVRGSALKYDAY 140
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BLAST of mRNA_L-elsbetiae_contig17234.4801.1 vs. uniprot
Match: D7FVS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS0_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.960e-14
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 GCETLGRSEKDKVANSLVQCFTVVLLLAERCNIDLPLSVQLKMKLNAKKYPVLIAKGSALKYDAY 195
            G     R EKD V   L      +LLLAE+CN+DL LSV LK+KLNAKKYP ++ +GSALKYDAY
Sbjct:   32 GLPRFTRPEKDVVVLELGSAAGCLLLLAEQCNVDLGLSVDLKIKLNAKKYPAVLVRGSALKYDAY 96
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BLAST of mRNA_L-elsbetiae_contig17234.4801.1 vs. uniprot
Match: A0A7M7JJN7_VARDE (dCTP pyrophosphatase 1 n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7JJN7_VARDE)

HSP 1 Score: 51.6 bits (122), Expect = 1.420e-6
Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:    1 GCETLGRSEKDKVANSLVQCFTVVLLLAERCNIDLPLSVQLKMKLNAKKYPVLIAKGSALKYD 189
            G   L   EK  +   L      ++ LAERC +DLP+    K+K NA+KYPV +AKG + K+D
Sbjct:   74 GVPELSSDEKTHLGEELSDVLLYLIRLAERCEVDLPMEALRKLKKNAEKYPVSLAKGRSGKHD 136
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BLAST of mRNA_L-elsbetiae_contig17234.4801.1 vs. uniprot
Match: A0A7R8XGZ9_9CRUS (dCTP pyrophosphatase 1 n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8XGZ9_9CRUS)

HSP 1 Score: 48.1 bits (113), Expect = 3.920e-5
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:   25 EKDKVANSLVQCFTVVLLLAERCNIDLPLSVQLKMKLNAKKYPVLIAKGSALKYDAY 195
            +K++V   +      +++LA+RC IDLP ++  KM LNA KYP    KG + KY+ Y
Sbjct:   98 DKERVGEEMSDILIYLVMLADRCRIDLPKAITEKMNLNALKYPRDKVKGDSRKYNEY 154
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BLAST of mRNA_L-elsbetiae_contig17234.4801.1 vs. uniprot
Match: UPI001AE053B9 (nucleotide pyrophosphohydrolase n=1 Tax=Rhodoferax sp. AJA081-3 TaxID=2752316 RepID=UPI001AE053B9)

HSP 1 Score: 47.0 bits (110), Expect = 5.800e-5
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:    7 ETLGRSEKDKVANSLVQCFTVVLLLAERCNIDLPLSVQLKMKLNAKKYPVLIAKGSALKY 186
            + L   +KD+VA      F  +L L ++  IDL  + Q KM +NA+KYPV  A+G+A KY
Sbjct:   54 QALSPDKKDEVAAEAADVFLYLLQLCDKLGIDLVAAAQAKMLVNAQKYPVDAARGTATKY 113
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BLAST of mRNA_L-elsbetiae_contig17234.4801.1 vs. uniprot
Match: UPI00040F7343 (nucleotide pyrophosphohydrolase n=1 Tax=Methylocaldum szegediense TaxID=73780 RepID=UPI00040F7343)

HSP 1 Score: 47.0 bits (110), Expect = 6.010e-5
Identity = 25/57 (43.86%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   19 RSEKDKVANSLVQCFTVVLLLAERCNIDLPLSVQLKMKLNAKKYPVLIAKGSALKYD 189
            R+ +++VA+ L+     +L LA++ NIDL  +V+ KM+ NA+KYPV +A+G+A+KY+
Sbjct:   62 RAVREEVADVLIY----LLRLADQLNIDLDAAVEEKMRKNAEKYPVELARGNAVKYN 114
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17234.4801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KIJ4_9PHAE3.240e-1462.71MazG domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FVS0_ECTSI3.960e-1458.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7M7JJN7_VARDE1.420e-641.27dCTP pyrophosphatase 1 n=1 Tax=Varroa destructor T... [more]
A0A7R8XGZ9_9CRUS3.920e-540.35dCTP pyrophosphatase 1 n=1 Tax=Darwinula stevenson... [more]
UPI001AE053B95.800e-541.67nucleotide pyrophosphohydrolase n=1 Tax=Rhodoferax... [more]
UPI00040F73436.010e-543.86nucleotide pyrophosphohydrolase n=1 Tax=Methylocal... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17234contigL-elsbetiae_contig17234:1504..1698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.51501-CDS-L-elsbetiae_contig17234:1503..16981622815718.51501-CDS-L-elsbetiae_contig17234:1503..1698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17234 1504..1698 -
1691683057.5798979-CDS-L-elsbetiae_contig17234:1503..16981691683057.5798979-CDS-L-elsbetiae_contig17234:1503..1698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17234 1504..1698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17234.4801.1prot_L-elsbetiae_contig17234.4801.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17234 1504..1698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17234.4801.1

>prot_L-elsbetiae_contig17234.4801.1 ID=prot_L-elsbetiae_contig17234.4801.1|Name=mRNA_L-elsbetiae_contig17234.4801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
GCETLGRSEKDKVANSLVQCFTVVLLLAERCNIDLPLSVQLKMKLNAKKY
PVLIAKGSALKYDAY
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mRNA from alignment at L-elsbetiae_contig17234:1504..1698-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17234.4801.1 ID=mRNA_L-elsbetiae_contig17234.4801.1|Name=mRNA_L-elsbetiae_contig17234.4801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=195bp|location=Sequence derived from alignment at L-elsbetiae_contig17234:1504..1698- (Laminarionema elsbetiae ELsaHSoW15)
GGTTGTGAAACTCTCGGCAGGTCAGAAAAAGACAAGGTGGCAAACTCTCT
TGTCCAGTGCTTCACAGTCGTGTTGCTTTTGGCCGAACGCTGCAACATCG
ATCTACCTCTTTCAGTCCAGCTCAAGATGAAGCTCAATGCCAAAAAGTAC
CCGGTGCTCATCGCCAAAGGCTCGGCATTGAAGTATGATGCCTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17234:1504..1698-

>mRNA_L-elsbetiae_contig17234.4801.1 ID=mRNA_L-elsbetiae_contig17234.4801.1|Name=mRNA_L-elsbetiae_contig17234.4801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig17234:1504..1698- (Laminarionema elsbetiae ELsaHSoW15)
GGTTGTGAAACTCTCGGCAGGTCAGAAAAAGACAAGGTGGCAAACTCTCT
TGTCCAGTGCTTCACAGTCGTGTTGCTTTTGGCCGAACGCTGCAACATCG
ATCTACCTCTTTCAGTCCAGCTCAAGATGAAGCTCAATGCCAAAAAGTAC
CCGGTGCTCATCGCCAAAGGCTCGGCATTGAAGTATGATGCCTACGGTTG
TGAAACTCTCGGCAGGTCAGAAAAAGACAAGGTGGCAAACTCTCTTGTCC
AGTGCTTCACAGTCGTGTTGCTTTTGGCCGAACGCTGCAACATCGATCTA
CCTCTTTCAGTCCAGCTCAAGATGAAGCTCAATGCCAAAAAGTACCCGGT
GCTCATCGCCAAAGGCTCGGCATTGAAGTATGATGCCTAC
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