mRNA_L-elsbetiae_contig1723.4798.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1723.4798.1
Unique NamemRNA_L-elsbetiae_contig1723.4798.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1723.4798.1 vs. uniprot
Match: D8LEN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN2_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.640e-7
Identity = 63/149 (42.28%), Postives = 78/149 (52.35%), Query Frame = -3 
Query:   57 KRSRSLTRNPCSLPSLSAGPYLSHKRGTSMGGGS---LG------HELRQEQQ---QQQGEGVICSTPK-ATRGDRRATPSSRLRSRKSAPMLGMLQNAQDLAATSPXXXXXXXXXXXXXXXXXXRSSGNLRVIPGDAVSAADASTIYR 464
            KR  SLTR+  S+P LSAGP+ SHKRG+S G      LG      H+ + +QQ   Q Q   ++  TP+   RG    TP+SR R+RK   MLGMLQNAQD AA SP                   S G+L V  GD  S+A A+T  R
Sbjct:   25 KRVSSLTRH-SSMPLLSAGPHSSHKRGSSAGASLTPLLGPNEPTQHDQQGQQQRRHQPQQHNMVLMTPRRGGRGTATTTPNSRPRNRKMPSMLGMLQNAQDQAA-SPVSALSSNSHYL--------SDGSLVVGAGDNESSAAAATADR 163
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BLAST of mRNA_L-elsbetiae_contig1723.4798.1 vs. uniprot
Match: A0A6H5KRH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH3_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.780e-7
Identity = 66/176 (37.50%), Postives = 81/176 (46.02%), Query Frame = -3 
Query:  189 EEKREIGWAPDTRNKFSPTPEKTTAATAPGAAEAVEGAHTAVGAPGATSAPVPPAQAEDTSATWRRHAPPKRSRSLTRNPCSLPSLSAGPYLSHKRGTSMGGGSLGHELRQEQQQQQGEGVICS-------------TPK-ATRGDRRATPSSRLRSRKSAPMLGMLQNAQDLAAT 674
            EE+RE+GWAP T NKFSP  E   A+    A ++                    AQ +D +         KR  SLTR   S+P LSAGP+ SHKRG+S G  SL   L   +                        TP+   RG    TP+SR R+RK   MLGMLQNAQD AA+
Sbjct:  119 EERREVGWAPTTTNKFSPMAETAAASFVLKADDS--------------------AQVKDDAG--------KRVSSLTRY-TSMPLLSAGPHSSHKRGSSAGA-SLTSLLGPNEPTHHXXXXXXXXXXXXXXXXXXXXTPRRGGRGTATTTPNSRPRNRKMPSMLGMLQNAQDQAAS 264
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1723.4798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEN2_ECTSI2.640e-742.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRH3_9PHAE4.780e-737.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1723contigL-elsbetiae_contig1723:5284..6424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1141
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1723.4798.1prot_L-elsbetiae_contig1723.4798.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1723 5503..6222 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.2126584-UTR-L-elsbetiae_contig1723:5283..55021622815718.2126584-UTR-L-elsbetiae_contig1723:5283..5502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1723 5284..5502 +
1691683057.3860817-UTR-L-elsbetiae_contig1723:5283..55021691683057.3860817-UTR-L-elsbetiae_contig1723:5283..5502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1723 5284..5502 +
1622815718.2419055-UTR-L-elsbetiae_contig1723:6222..64241622815718.2419055-UTR-L-elsbetiae_contig1723:6222..6424Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1723 6223..6424 +
1691683057.406993-UTR-L-elsbetiae_contig1723:6222..64241691683057.406993-UTR-L-elsbetiae_contig1723:6222..6424Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1723 6223..6424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.2273643-CDS-L-elsbetiae_contig1723:5502..62221622815718.2273643-CDS-L-elsbetiae_contig1723:5502..6222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1723 5503..6222 +
1691683057.396252-CDS-L-elsbetiae_contig1723:5502..62221691683057.396252-CDS-L-elsbetiae_contig1723:5502..6222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1723 5503..6222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1723.4798.1

>prot_L-elsbetiae_contig1723.4798.1 ID=prot_L-elsbetiae_contig1723.4798.1|Name=mRNA_L-elsbetiae_contig1723.4798.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=240bp
MPSIGADLRLRSRELGVALRSPRVALGVEQITPSPCCCCCSCRSSCPNEP
PPIEVPRLWERYGPALNDGREQGFRVRDLLRFGGACLLHVALVSSAWAGG
TGADVAPGAPTAVCAPSTASAAPGAVAAVVFSGVGENLFLVSGAQPISRF
SSLPSQFPPSSTTFPVPRYSPTSPVPSPLSSRASHCCSSPFHRAPSLPVF
STSARSSVKGRGCCREGLAVDRHPALTGSPPLSFSSAGF*
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mRNA from alignment at L-elsbetiae_contig1723:5284..6424+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1723.4798.1 ID=mRNA_L-elsbetiae_contig1723.4798.1|Name=mRNA_L-elsbetiae_contig1723.4798.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1141bp|location=Sequence derived from alignment at L-elsbetiae_contig1723:5284..6424+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCTCAAGCCGGCCAGGCCGCCGAAGTCCCCGACGCTCGTGCTTCTCGA
GGTACGCCTGTAAATCGTCGAGGCGTCGGCGGCAGAAACGGCGTCCCCCG
GTATCACCCTGAGGTTGCCGCTGCTGCGGTGGTGGCGGTGGTAGCGGTTG
TTGCTGTCACCCGGAGCGGATGCAGGCGGCGGCGGAGAAGTAGCGGCTAG
GTCTTGCGCGTTTTGCAGCATGCCGAGCATCGGGGCAGACTTGCGGCTCC
GGAGCCGGGAGCTCGGCGTTGCTCTGCGATCGCCACGCGTCGCCTTGGGG
GTCGAGCAAATCACGCCCTCCCCCTGCTGCTGCTGCTGCTCCTGCCGGAG
CTCGTGCCCCAACGAGCCCCCCCCCATCGAGGTCCCTCGCTTGTGGGAGA
GATACGGCCCCGCGCTCAACGATGGCAGGGAGCAAGGGTTTCGGGTCAGA
GACCTGCTCCGCTTCGGGGGCGCGTGCCTCCTCCACGTCGCGCTCGTATC
TTCTGCTTGGGCAGGCGGTACCGGTGCAGACGTGGCCCCTGGTGCGCCCA
CCGCCGTGTGCGCCCCTTCTACCGCCTCTGCCGCTCCCGGTGCCGTTGCT
GCTGTGGTCTTCTCCGGTGTTGGAGAAAACTTGTTTCTGGTGTCGGGCGC
CCAGCCTATCTCGCGCTTTTCTTCTCTCCCCTCGCAGTTTCCACCCTCAT
CAACAACGTTCCCGGTGCCCCGGTATTCGCCGACGTCGCCCGTGCCTTCG
CCGCTCTCTTCGCGTGCCTCGCACTGCTGTTCCTCTCCGTTCCACCGTGC
CCCATCTTTGCCGGTCTTCTCTACTTCGGCGCGGTCTTCTGTAAAAGGTA
GGGGTTGTTGCAGGGAAGGCCTCGCCGTGGATCGGCACCCAGCGCTTACG
GGCTCTCCGCCGCTCTCTTTCAGCTCCGCTGGCTTCTGATCCGGGTTCTC
TAGTTGTTCCTCTTCAGGAGCCGCTGGTACGCCGTCTTCGGTCGGCGAAC
GGTTGTGCCATTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTCTTTCGCC
TGCTGGAGGTCAATGCTACTACCGTCTCTATTGATGGTCCCAACAACGCT
GCCGCCGCTGCCGCCGCTTCCGCCGCCGCCGCCGCTGTTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1723:5284..6424+

>mRNA_L-elsbetiae_contig1723.4798.1 ID=mRNA_L-elsbetiae_contig1723.4798.1|Name=mRNA_L-elsbetiae_contig1723.4798.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1440bp|location=Sequence derived from alignment at L-elsbetiae_contig1723:5284..6424+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGAGCATCGGGGCAGACTTGCGGCTCCGGAGCCGGGAGCTCGGCGT
TGCTCTGCGATCGCCACGCGTCGCCTTGGGGGTCGAGCAAATCACGCCCT
CCCCCTGCTGCTGCTGCTGCTCCTGCCGGAGCTCGTGCCCCAACGAGCCC
CCCCCCATCGAGGTCCCTCGCTTGTGGGAGAGATACGGCCCCGCGCTCAA
CGATGGCAGGGAGCAAGGGTTTCGGGTCAGAGACCTGCTCCGCTTCGGGG
GCGCGTGCCTCCTCCACGTCGCGCTCGTATCTTCTGCTTGGGCAGGCGGT
ACCGGTGCAGACGTGGCCCCTGGTGCGCCCACCGCCGTGTGCGCCCCTTC
TACCGCCTCTGCCGCTCCCGGTGCCGTTGCTGCTGTGGTCTTCTCCGGTG
TTGGAGAAAACTTGTTTCTGGTGTCGGGCGCCCAGCCTATCTCGCGCTTT
TCTTCTCTCCCCTCGCAGTTTCCACCCTCATCAACAACGTTCCCGGTGCC
CCGGTATTCGCCGACGTCGCCCGTGCCTTCGCCGCTCTCTTCGCGTGCCT
CGCACTGCTGTTCCTCTCCGTTCCACCGTGCCCCATCTTTGCCGGTCTTC
TCTACTTCGGCGCGGTCTTCTGTAAAAGGTAGGGGTTGTTGCAGGGAAGG
CCTCGCCGTGGATCGGCACCCAGCGCTTACGGGCTCTCCGCCGCTCTCTT
TCAGCTCCGCTGGCTTCTGAATGCCGAGCATCGGGGCAGACTTGCGGCTC
CGGAGCCGGGAGCTCGGCGTTGCTCTGCGATCGCCACGCGTCGCCTTGGG
GGTCGAGCAAATCACGCCCTCCCCCTGCTGCTGCTGCTGCTCCTGCCGGA
GCTCGTGCCCCAACGAGCCCCCCCCCATCGAGGTCCCTCGCTTGTGGGAG
AGATACGGCCCCGCGCTCAACGATGGCAGGGAGCAAGGGTTTCGGGTCAG
AGACCTGCTCCGCTTCGGGGGCGCGTGCCTCCTCCACGTCGCGCTCGTAT
CTTCTGCTTGGGCAGGCGGTACCGGTGCAGACGTGGCCCCTGGTGCGCCC
ACCGCCGTGTGCGCCCCTTCTACCGCCTCTGCCGCTCCCGGTGCCGTTGC
TGCTGTGGTCTTCTCCGGTGTTGGAGAAAACTTGTTTCTGGTGTCGGGCG
CCCAGCCTATCTCGCGCTTTTCTTCTCTCCCCTCGCAGTTTCCACCCTCA
TCAACAACGTTCCCGGTGCCCCGGTATTCGCCGACGTCGCCCGTGCCTTC
GCCGCTCTCTTCGCGTGCCTCGCACTGCTGTTCCTCTCCGTTCCACCGTG
CCCCATCTTTGCCGGTCTTCTCTACTTCGGCGCGGTCTTCTGTAAAAGGT
AGGGGTTGTTGCAGGGAAGGCCTCGCCGTGGATCGGCACCCAGCGCTTAC
GGGCTCTCCGCCGCTCTCTTTCAGCTCCGCTGGCTTCTGA
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