mRNA_L-elsbetiae_contig17225.4796.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17225.4796.1
Unique NamemRNA_L-elsbetiae_contig17225.4796.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17225.4796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17225contigL-elsbetiae_contig17225:39..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size365
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.151554-UTR-L-elsbetiae_contig17225:38..611622815718.151554-UTR-L-elsbetiae_contig17225:38..61Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17225 39..61 +
1691683057.3682554-UTR-L-elsbetiae_contig17225:38..611691683057.3682554-UTR-L-elsbetiae_contig17225:38..61Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17225 39..61 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.171057-CDS-L-elsbetiae_contig17225:61..4031622815718.171057-CDS-L-elsbetiae_contig17225:61..403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17225 62..403 +
1691683057.3773775-CDS-L-elsbetiae_contig17225:61..4031691683057.3773775-CDS-L-elsbetiae_contig17225:61..403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17225 62..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17225.4796.1prot_L-elsbetiae_contig17225.4796.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17225 62..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17225.4796.1

>prot_L-elsbetiae_contig17225.4796.1 ID=prot_L-elsbetiae_contig17225.4796.1|Name=mRNA_L-elsbetiae_contig17225.4796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MHSMEQGASAVLNQLRPFQMRLRLRRRQAGPRWLLETTADEHWGLVSCGG
VGIARSHHYSKKNSIVLLAWSDRSADPGGVGGGRSPNPRGGGSAVRRAWS
PRGGGSAVRHAGTP
back to top

mRNA from alignment at L-elsbetiae_contig17225:39..403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17225.4796.1 ID=mRNA_L-elsbetiae_contig17225.4796.1|Name=mRNA_L-elsbetiae_contig17225.4796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=365bp|location=Sequence derived from alignment at L-elsbetiae_contig17225:39..403+ (Laminarionema elsbetiae ELsaHSoW15)
TTCCATGTTCGAATTAGTTGTCGATGCATTCGATGGAACAAGGGGCGAGT
GCTGTACTGAACCAACTTCGACCGTTCCAGATGCGGCTGCGTCTACGCCG
CCGACAGGCGGGGCCACGCTGGCTACTAGAGACGACTGCTGATGAGCACT
GGGGGCTAGTGTCATGCGGCGGGGTGGGGATCGCACGGAGTCATCACTAC
TCGAAGAAGAACTCGATTGTATTACTTGCCTGGAGTGACCGGAGTGCTGA
CCCTGGCGGCGTTGGCGGCGGTCGGTCTCCGAATCCGAGGGGCGGCGGTT
CCGCTGTCCGTCGCGCCTGGAGTCCTCGGGGCGGCGGTTCCGCTGTCCGT
CACGCCGGGACTCCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17225:39..403+

>mRNA_L-elsbetiae_contig17225.4796.1 ID=mRNA_L-elsbetiae_contig17225.4796.1|Name=mRNA_L-elsbetiae_contig17225.4796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig17225:39..403+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATTCGATGGAACAAGGGGCGAGTGCTGTACTGAACCAACTTCGACC
GTTCCAGATGCGGCTGCGTCTACGCCGCCGACAGGCGGGGCCACGCTGGC
TACTAGAGACGACTGCTGATGAGCACTGGGGGCTAGTGTCATGCGGCGGG
GTGGGGATCGCACGGAGTCATCACTACTCGAAGAAGAACTCGATTGTATT
ACTTGCCTGGAGTGACCGGAGTGCTGACCCTGGCGGCGTTGGCGGCGGTC
GGTCTCCGAATCCGAGGGGCGGCGGTTCCGCTGTCCGTCGCGCCTGGAGT
CCTCGGGGCGGCGGTTCCGCTGTCCGTCACGCCGGGACTCCTATGCATTC
GATGGAACAAGGGGCGAGTGCTGTACTGAACCAACTTCGACCGTTCCAGA
TGCGGCTGCGTCTACGCCGCCGACAGGCGGGGCCACGCTGGCTACTAGAG
ACGACTGCTGATGAGCACTGGGGGCTAGTGTCATGCGGCGGGGTGGGGAT
CGCACGGAGTCATCACTACTCGAAGAAGAACTCGATTGTATTACTTGCCT
GGAGTGACCGGAGTGCTGACCCTGGCGGCGTTGGCGGCGGTCGGTCTCCG
AATCCGAGGGGCGGCGGTTCCGCTGTCCGTCGCGCCTGGAGTCCTCGGGG
CGGCGGTTCCGCTGTCCGTCACGCCGGGACTCCT
back to top