mRNA_L-elsbetiae_contig1720.4786.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1720.4786.1
Unique NamemRNA_L-elsbetiae_contig1720.4786.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1720.4786.1 vs. uniprot
Match: A0A6H5KG62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG62_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 7.850e-22
Identity = 153/433 (35.33%), Postives = 188/433 (43.42%), Query Frame = 1 
Query:  253 VATANPRLQ-VSALPRGTVVRVRLFAKEETVPLVVPEVGQEEKITAANSAGKGETEQQQDEGDREVVTEXXXXXXXXXXXXXXXXXXXXXXXC---AQDVV-----------------------------ASSSVAVLPEPATGEQKVEASVPSLL--PEAEQVKDRPQQ--------HYQQQRGGE----TAAPVSEENAAAGVGAAKLVVQVYPAVAKEEHVLQTEETTPPELQTATFRVVDEHHAGA------------RMGEAPCSSALVERETIVTTVLPSXXXXXXXXXXXXXLLSQQPAEEIAVMKKMHDDVKETVAAEHGVAVGDEHRE--------------------GKGLAVVVPQHAGSVVDAETRSLVEESKYLQFADDERGVLCTLTGKKIAPAYDNILLYMGSKKVQQLMVEGPFFMT 1314
            V  ANPRLQ VSALPR TVV+ +LF +EE      PE   EE  TAA    +G+     D     VVT  XXXXXXXXXXXXXXXXXX          DVV                             AS+++AV  EPA  E++ + +  S L   E  Q + RP+         H +QQ+  E    TA P  + +     G A+ V QV    A  E                                        R  + P  S L++ E  V  +LP                 Q+   E +VM    +D  +T     G AV  E+                      G+  AV VP HAG VVD ETRSLVE SKYL+F DDER VLCTLTGKK+AP Y  IL YMGS++VQQL+VEGP  M+
Sbjct:  138 VVAANPRLQGVSALPRETVVQAKLFVEEEDDESCAPET-MEEGTTAAVDVTEGD-----DLAGTSVVTPAXXXXXXXXXXXXXXXXXXENMAADGQPADVVDLPSAGMKQDESVVTIMTIPEKENHVTLGASAAIAVSTEPAHMEEEGDENPASCLRSEEERQGETRPEGAVVASDEGHDEQQQVNEAGACTADPAKQRS-----GDAQEVPQVVMQPASGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRTNDEPMPSVLLQNERDVVPLLPP----------------QEEDPEASVMPSQPEDDADTAPVPQGCAVVTENAPRVVGEPGSSRKLEAAADVGLGEERAVAVPGHAGLVVDEETRSLVEGSKYLRFEDDERTVLCTLTGKKLAPDYIGILNYMGSRRVQQLVVEGPVSMS 543
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BLAST of mRNA_L-elsbetiae_contig1720.4786.1 vs. uniprot
Match: D7G929_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G929_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 3.400e-21
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 1 
Query: 1087 GKGLAVVVPQHAGSVVDAETRSLVEESKYLQFADDERGVLCTLTGKKIAPAYDNILLYMGSKKVQQLMVEGPFFMT 1314
            G+   V VP HAG VVD ETRSLVE SKYL+F DDER VLCTLTGKK+AP Y  IL YMGS++VQQL+VEGP  M+
Sbjct:  231 GEERTVAVPGHAGLVVDEETRSLVEGSKYLRFEDDERTVLCTLTGKKLAPDYIGILKYMGSRRVQQLVVEGPVSMS 306
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1720.4786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG62_9PHAE7.850e-2235.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G929_ECTSI3.400e-2169.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1720contigL-elsbetiae_contig1720:1815..3128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002110.1
Exons1
Model size1314
Cds size1314
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.8918197-CDS-L-elsbetiae_contig1720:1814..31281622815716.8918197-CDS-L-elsbetiae_contig1720:1814..3128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1720 1815..3128 +
1691683056.544505-CDS-L-elsbetiae_contig1720:1814..31281691683056.544505-CDS-L-elsbetiae_contig1720:1814..3128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1720 1815..3128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1720.4786.1prot_L-elsbetiae_contig1720.4786.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1720 1815..3128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1720.4786.1

>prot_L-elsbetiae_contig1720.4786.1 ID=prot_L-elsbetiae_contig1720.4786.1|Name=mRNA_L-elsbetiae_contig1720.4786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=438bp
IQLSTAATGDDPTRETVTIDAAMRTSDNKVGVEKTLTVVEETKTDVRDES
ASAAAPVSAAEAGQEGEAPVSVTTDVLQGRPSMMVATANPRLQVSALPRG
TVVRVRLFAKEETVPLVVPEVGQEEKITAANSAGKGETEQQQDEGDREVV
TEERNENVEPPHQQQEENTTAVVTVCAQDVVASSSVAVLPEPATGEQKVE
ASVPSLLPEAEQVKDRPQQHYQQQRGGETAAPVSEENAAAGVGAAKLVVQ
VYPAVAKEEHVLQTEETTPPELQTATFRVVDEHHAGARMGEAPCSSALVE
RETIVTTVLPSQEKEEENDDQAPVLLSQQPAEEIAVMKKMHDDVKETVAA
EHGVAVGDEHREGKGLAVVVPQHAGSVVDAETRSLVEESKYLQFADDERG
VLCTLTGKKIAPAYDNILLYMGSKKVQQLMVEGPFFMT
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mRNA from alignment at L-elsbetiae_contig1720:1815..3128+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1720.4786.1 ID=mRNA_L-elsbetiae_contig1720.4786.1|Name=mRNA_L-elsbetiae_contig1720.4786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1314bp|location=Sequence derived from alignment at L-elsbetiae_contig1720:1815..3128+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCAGCTATCGACAGCAGCAACGGGGGACGACCCCACACGCGAGACTGT
CACAATAGATGCGGCAATGCGGACCTCTGACAACAAAGTCGGTGTGGAAA
AAACTTTGACAGTAGTGGAGGAGACCAAGACCGACGTCCGGGACGAGAGT
GCCTCGGCAGCAGCACCGGTGTCGGCAGCAGAAGCGGGACAGGAGGGCGA
AGCTCCAGTTTCTGTCACGACGGATGTGCTGCAGGGGCGGCCAAGTATGA
TGGTTGCAACGGCTAACCCTCGACTCCAGGTGTCCGCGCTACCGCGTGGA
ACCGTCGTGCGCGTCAGGCTCTTCGCCAAGGAGGAGACCGTGCCGCTGGT
TGTGCCGGAGGTCGGGCAGGAAGAGAAAATCACTGCTGCTAATTCGGCGG
GCAAGGGAGAGACCGAGCAGCAGCAAGACGAGGGTGATCGTGAAGTAGTG
ACGGAGGAACGAAATGAGAACGTCGAGCCGCCGCATCAGCAGCAAGAAGA
GAACACTACTGCAGTAGTCACCGTATGCGCCCAGGACGTTGTCGCATCTA
GCAGTGTCGCCGTTCTCCCGGAACCTGCCACCGGCGAGCAGAAAGTTGAG
GCATCAGTGCCTTCTCTGCTGCCTGAGGCAGAGCAAGTCAAGGACCGGCC
GCAGCAGCACTACCAGCAGCAGCGCGGAGGTGAGACGGCTGCTCCTGTGT
CCGAGGAAAATGCTGCAGCAGGAGTGGGAGCGGCCAAGCTCGTGGTCCAG
GTGTACCCAGCGGTGGCCAAGGAAGAACACGTGCTTCAGACCGAGGAAAC
AACCCCCCCTGAGCTACAAACTGCTACTTTTCGTGTCGTTGACGAGCACC
ATGCCGGCGCAAGGATGGGCGAAGCCCCGTGCTCGTCTGCCCTGGTGGAG
AGGGAGACGATTGTCACCACGGTGTTGCCGTCGCAGGAGAAGGAGGAGGA
AAACGATGACCAGGCCCCGGTTTTGCTGTCGCAGCAGCCGGCCGAAGAAA
TTGCCGTGATGAAGAAAATGCACGACGATGTTAAAGAGACGGTTGCAGCA
GAGCACGGGGTGGCGGTGGGCGACGAGCATCGCGAGGGCAAGGGCCTCGC
TGTCGTGGTGCCACAGCACGCCGGGTCGGTTGTGGACGCCGAAACCAGGA
GCTTGGTGGAGGAAAGCAAGTATCTCCAGTTTGCGGACGACGAAAGGGGC
GTGCTGTGCACCCTCACAGGCAAGAAGATCGCCCCGGCCTACGATAACAT
CCTCCTATACATGGGCAGCAAGAAGGTGCAGCAGCTCATGGTTGAAGGGC
CCTTCTTCATGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1720:1815..3128+

>mRNA_L-elsbetiae_contig1720.4786.1 ID=mRNA_L-elsbetiae_contig1720.4786.1|Name=mRNA_L-elsbetiae_contig1720.4786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2628bp|location=Sequence derived from alignment at L-elsbetiae_contig1720:1815..3128+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCAGCTATCGACAGCAGCAACGGGGGACGACCCCACACGCGAGACTGT
CACAATAGATGCGGCAATGCGGACCTCTGACAACAAAGTCGGTGTGGAAA
AAACTTTGACAGTAGTGGAGGAGACCAAGACCGACGTCCGGGACGAGAGT
GCCTCGGCAGCAGCACCGGTGTCGGCAGCAGAAGCGGGACAGGAGGGCGA
AGCTCCAGTTTCTGTCACGACGGATGTGCTGCAGGGGCGGCCAAGTATGA
TGGTTGCAACGGCTAACCCTCGACTCCAGGTGTCCGCGCTACCGCGTGGA
ACCGTCGTGCGCGTCAGGCTCTTCGCCAAGGAGGAGACCGTGCCGCTGGT
TGTGCCGGAGGTCGGGCAGGAAGAGAAAATCACTGCTGCTAATTCGGCGG
GCAAGGGAGAGACCGAGCAGCAGCAAGACGAGGGTGATCGTGAAGTAGTG
ACGGAGGAACGAAATGAGAACGTCGAGCCGCCGCATCAGCAGCAAGAAGA
GAACACTACTGCAGTAGTCACCGTATGCGCCCAGGACGTTGTCGCATCTA
GCAGTGTCGCCGTTCTCCCGGAACCTGCCACCGGCGAGCAGAAAGTTGAG
GCATCAGTGCCTTCTCTGCTGCCTGAGGCAGAGCAAGTCAAGGACCGGCC
GCAGCAGCACTACCAGCAGCAGCGCGGAGGTGAGACGGCTGCTCCTGTGT
CCGAGGAAAATGCTGCAGCAGGAGTGGGAGCGGCCAAGCTCGTGGTCCAG
GTGTACCCAGCGGTGGCCAAGGAAGAACACGTGCTTCAGACCGAGGAAAC
AACCCCCCCTGAGCTACAAACTGCTACTTTTCGTGTCGTTGACGAGCACC
ATGCCGGCGCAAGGATGGGCGAAGCCCCGTGCTCGTCTGCCCTGGTGGAG
AGGGAGACGATTGTCACCACGGTGTTGCCGTCGCAGGAGAAGGAGGAGGA
AAACGATGACCAGGCCCCGGTTTTGCTGTCGCAGCAGCCGGCCGAAGAAA
TTGCCGTGATGAAGAAAATGCACGACGATGTTAAAGAGACGGTTGCAGCA
GAGCACGGGGTGGCGGTGGGCGACGAGCATCGCGAGGGCAAGGGCCTCGC
TGTCGTGGTGCCACAGCACGCCGGGTCGGTTGTGGACGCCGAAACCAGGA
GCTTGGTGGAGGAAAGCAAGTATCTCCAGTTTGCGGACGACGAAAGGGGC
GTGCTGTGCACCCTCACAGGCAAGAAGATCGCCCCGGCCTACGATAACAT
CCTCCTATACATGGGCAGCAAGAAGGTGCAGCAGCTCATGGTTGAAGGGC
CCTTCTTCATGACGATTCAGCTATCGACAGCAGCAACGGGGGACGACCCC
ACACGCGAGACTGTCACAATAGATGCGGCAATGCGGACCTCTGACAACAA
AGTCGGTGTGGAAAAAACTTTGACAGTAGTGGAGGAGACCAAGACCGACG
TCCGGGACGAGAGTGCCTCGGCAGCAGCACCGGTGTCGGCAGCAGAAGCG
GGACAGGAGGGCGAAGCTCCAGTTTCTGTCACGACGGATGTGCTGCAGGG
GCGGCCAAGTATGATGGTTGCAACGGCTAACCCTCGACTCCAGGTGTCCG
CGCTACCGCGTGGAACCGTCGTGCGCGTCAGGCTCTTCGCCAAGGAGGAG
ACCGTGCCGCTGGTTGTGCCGGAGGTCGGGCAGGAAGAGAAAATCACTGC
TGCTAATTCGGCGGGCAAGGGAGAGACCGAGCAGCAGCAAGACGAGGGTG
ATCGTGAAGTAGTGACGGAGGAACGAAATGAGAACGTCGAGCCGCCGCAT
CAGCAGCAAGAAGAGAACACTACTGCAGTAGTCACCGTATGCGCCCAGGA
CGTTGTCGCATCTAGCAGTGTCGCCGTTCTCCCGGAACCTGCCACCGGCG
AGCAGAAAGTTGAGGCATCAGTGCCTTCTCTGCTGCCTGAGGCAGAGCAA
GTCAAGGACCGGCCGCAGCAGCACTACCAGCAGCAGCGCGGAGGTGAGAC
GGCTGCTCCTGTGTCCGAGGAAAATGCTGCAGCAGGAGTGGGAGCGGCCA
AGCTCGTGGTCCAGGTGTACCCAGCGGTGGCCAAGGAAGAACACGTGCTT
CAGACCGAGGAAACAACCCCCCCTGAGCTACAAACTGCTACTTTTCGTGT
CGTTGACGAGCACCATGCCGGCGCAAGGATGGGCGAAGCCCCGTGCTCGT
CTGCCCTGGTGGAGAGGGAGACGATTGTCACCACGGTGTTGCCGTCGCAG
GAGAAGGAGGAGGAAAACGATGACCAGGCCCCGGTTTTGCTGTCGCAGCA
GCCGGCCGAAGAAATTGCCGTGATGAAGAAAATGCACGACGATGTTAAAG
AGACGGTTGCAGCAGAGCACGGGGTGGCGGTGGGCGACGAGCATCGCGAG
GGCAAGGGCCTCGCTGTCGTGGTGCCACAGCACGCCGGGTCGGTTGTGGA
CGCCGAAACCAGGAGCTTGGTGGAGGAAAGCAAGTATCTCCAGTTTGCGG
ACGACGAAAGGGGCGTGCTGTGCACCCTCACAGGCAAGAAGATCGCCCCG
GCCTACGATAACATCCTCCTATACATGGGCAGCAAGAAGGTGCAGCAGCT
CATGGTTGAAGGGCCCTTCTTCATGACG
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