mRNA_L-elsbetiae_contig17181.4778.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17181.4778.1
Unique NamemRNA_L-elsbetiae_contig17181.4778.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17181.4778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17181contigL-elsbetiae_contig17181:1027..2802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17181.4778.1prot_L-elsbetiae_contig17181.4778.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17181 1068..2789 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.8621652-UTR-L-elsbetiae_contig17181:1026..10671622815715.8621652-UTR-L-elsbetiae_contig17181:1026..1067Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17181 1027..1067 +
1691683055.7919896-UTR-L-elsbetiae_contig17181:1026..10671691683055.7919896-UTR-L-elsbetiae_contig17181:1026..1067Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17181 1027..1067 +
1622815715.9074595-UTR-L-elsbetiae_contig17181:2789..28021622815715.9074595-UTR-L-elsbetiae_contig17181:2789..2802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17181 2790..2802 +
1691683055.8335724-UTR-L-elsbetiae_contig17181:2789..28021691683055.8335724-UTR-L-elsbetiae_contig17181:2789..2802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17181 2790..2802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.8754394-CDS-L-elsbetiae_contig17181:1067..12741622815715.8754394-CDS-L-elsbetiae_contig17181:1067..1274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17181 1068..1274 +
1691683055.807409-CDS-L-elsbetiae_contig17181:1067..12741691683055.807409-CDS-L-elsbetiae_contig17181:1067..1274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17181 1068..1274 +
1622815715.893876-CDS-L-elsbetiae_contig17181:2627..27891622815715.893876-CDS-L-elsbetiae_contig17181:2627..2789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17181 2628..2789 +
1691683055.822003-CDS-L-elsbetiae_contig17181:2627..27891691683055.822003-CDS-L-elsbetiae_contig17181:2627..2789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17181 2628..2789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17181.4778.1

>prot_L-elsbetiae_contig17181.4778.1 ID=prot_L-elsbetiae_contig17181.4778.1|Name=mRNA_L-elsbetiae_contig17181.4778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MRQRHRLTPPPRRRPRRRLGGSPRGKGKGEGERKGKKTRRRRHRRRRPRR
RAAAAAAAVVTPRESESQPVQTTQAGHRRARAKVKPRRGARPTSRARARA
RFPDKTSLPTKPTKLFFFFGNE*
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mRNA from alignment at L-elsbetiae_contig17181:1027..2802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17181.4778.1 ID=mRNA_L-elsbetiae_contig17181.4778.1|Name=mRNA_L-elsbetiae_contig17181.4778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1776bp|location=Sequence derived from alignment at L-elsbetiae_contig17181:1027..2802+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGGAACAGGAGGATAACGGCAAGAAGAAAGAAGGGTTTGATGAGACAG
CGGCACCGCCTGACGCCTCCGCCAAGAAGAAGACCACGAAGAAGGCTAGG
AGGCAGTCCAAGGGGAAAAGGAAAGGGGGAGGGGGAGAGAAAGGGCAAGA
AGACGCGTCGTCGCCGCCATCGCCGCCGTCGTCCCCGGCGTCGTGCGGCG
GCGGCGGCGGCGGCGGTGGTGACGCCAAGGGAAAGCGAAAGCCAACCGGT
GAGTTTGAAGGAAAAAACAGTAAATCAAAAATGGAACCTAAACCCACATT
GAGACGGGACTCTGTGAGATTCAATCTGTATAATGTAGTGACGTACCAAT
GGGCCGGCCAAGTAGAAAAACACCCAACATATGTATAAGAAGAATAATTC
AGTATCTCCCCTGCATATCTGCCAGGCCAAACCACATGTATTCCGGGGAG
AAACCCTCTGACAGTTTGTTTCCCTCGGGGTGTCTATAGCTGTTATGTCT
TGGTCTGGCGGCTCGCTTTTAATTAATGTATACAAAATGTCTGCAGTCTG
CACGTCCGATCTGCGAAAAAATCGTCCCAGGGACGACTGCTGTTATAGGC
ATAACATACTAACCCCCCCCCTTTTTCCCGATTCAAGATAAAAATACTCG
CACAAAATCCACCTTTGTAATTTTCAATTTTCCAGTTCGCCGGACGAATA
GATGGACCAAACGCATACATATGGTTGCGCTACTATAAAATAGTAATAAT
CCAGAGGCCTGCACTGCAGAGCTACCTATTTAAATCCTTTTTTGTCCCCC
CGACGTCAGCTTTCATCCGCACAGCCCGAATCCGTGCTTTGGGTTTTTCC
TTGTAAATAGTAATAGTTTCGAAAGATAAAATCATGAACGGAACCCATGT
AGCCCACATTCGAGACGGGACTCCGTGGGGTTAAACCGGTATTCCATTAT
ATGTAGTGGCGTGAAGTAATATTTTGTGGTTTATTGTAGCCAACGACGGC
GAGCCCTTGGCAAAACTTCCACTTCCTGCCCGCGGTTGTCGGGTCGTGGT
GTGGGTGCACTGCTGTGGGAGCGGATGCCGCCGTCCTGACCGTGATCGCG
CAGAAGCCATTTTTTTTTTCTTTTCCCTCCCATTAACTATTGGCTTATCC
GTCGTCGGCCCCATACTCCACTACGACTAGCTAGACGACCCAACCGTATA
GAAGTATACACACATATAATGTATGTATATGTATGTATATATAAATATAG
CCAATGACGGCCCCCGAGTACTGACTGCTGTGTAGTAGCCAAGAATGAGC
TGGCTTCCAGCGAAAACGGTAAAACCGTAAAATCCAAAATACCCCTTTTT
TTCCGCCGCGCATCTAAGGAAAAACAGTAGTTAATCAAAAATGGTAGGTA
CCTCACCCACATTTTAGACGGGGCTCCGTGAGATTCAATCGGTATTTATT
TCATATAGTGTATGGTAGTGACTTAATATTGGACCGGCCGAGTAGAAATA
CACCTAAAATATGTAGAAGAATAATTCACCATCTTTGTTGTGGTCGTCCG
TCCGCACTGCCGTGCCCTCTCTCTCTCCCCCCCCCCACACTACACTTGAA
GGTCCAGACGACTCAAGCGGGGCATCGAAGGGCAAGGGCCAAGGTAAAGC
CAAGAAGAGGCGCAAGACCGACAAGTAGGGCGCGCGCGCGCGCGAGGTTT
CCGGACAAGACAAGTCTGCCCACAAAACCAACAAAACTCTTCTTTTTTTT
CGGCAATGAATAGAAGAAAGCGACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17181:1027..2802+

>mRNA_L-elsbetiae_contig17181.4778.1 ID=mRNA_L-elsbetiae_contig17181.4778.1|Name=mRNA_L-elsbetiae_contig17181.4778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig17181:1027..2802+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGACAGCGGCACCGCCTGACGCCTCCGCCAAGAAGAAGACCACGAAG
AAGGCTAGGAGGCAGTCCAAGGGGAAAAGGAAAGGGGGAGGGGGAGAGAA
AGGGCAAGAAGACGCGTCGTCGCCGCCATCGCCGCCGTCGTCCCCGGCGT
CGTGCGGCGGCGGCGGCGGCGGCGGTGGTGACGCCAAGGGAAAGCGAAAG
CCAACCGATGAGACAGCGGCACCGCCTGACGCCTCCGCCAAGAAGAAGAC
CACGAAGAAGGCTAGGAGGCAGTCCAAGGGGAAAAGGAAAGGGGGAGGGG
GAGAGAAAGGGCAAGAAGACGCGTCGTCGCCGCCATCGCCGCCGTCGTCC
CCGGCGTCGTGCGGCGGCGGCGGCGGCGGCGGTGGTGACGCCAAGGGAAA
GCGAAAGCCAACCGGTCCAGACGACTCAAGCGGGGCATCGAAGGGCAAGG
GCCAAGGTAAAGCCAAGAAGAGGCGCAAGACCGACAAGTAGGGCGCGCGC
GCGCGCGAGGTTTCCGGACAAGACAAGTCTGCCCACAAAACCAACAAAAC
TCTTCTTTTTTTTCGGCAATGAATAGGTCCAGACGACTCAAGCGGGGCAT
CGAAGGGCAAGGGCCAAGGTAAAGCCAAGAAGAGGCGCAAGACCGACAAG
TAGGGCGCGCGCGCGCGCGAGGTTTCCGGACAAGACAAGTCTGCCCACAA
AACCAACAAAACTCTTCTTTTTTTTCGGCAATGAATAG
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