mRNA_L-elsbetiae_contig17177.4775.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17177.4775.1
Unique NamemRNA_L-elsbetiae_contig17177.4775.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17177.4775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17177contigL-elsbetiae_contig17177:1050..1738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size539
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17177.4775.1prot_L-elsbetiae_contig17177.4775.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17177 1445..1738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.618312-UTR-L-elsbetiae_contig17177:1049..12581622815715.618312-UTR-L-elsbetiae_contig17177:1049..1258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17177 1050..1258 +
1691683055.6490207-UTR-L-elsbetiae_contig17177:1049..12581691683055.6490207-UTR-L-elsbetiae_contig17177:1049..1258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17177 1050..1258 +
1622815715.628654-UTR-L-elsbetiae_contig17177:1408..14441622815715.628654-UTR-L-elsbetiae_contig17177:1408..1444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17177 1409..1444 +
1691683055.6587396-UTR-L-elsbetiae_contig17177:1408..14441691683055.6587396-UTR-L-elsbetiae_contig17177:1408..1444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17177 1409..1444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.6384892-CDS-L-elsbetiae_contig17177:1444..17381622815715.6384892-CDS-L-elsbetiae_contig17177:1444..1738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17177 1445..1738 +
1691683055.6700325-CDS-L-elsbetiae_contig17177:1444..17381691683055.6700325-CDS-L-elsbetiae_contig17177:1444..1738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17177 1445..1738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17177.4775.1

>prot_L-elsbetiae_contig17177.4775.1 ID=prot_L-elsbetiae_contig17177.4775.1|Name=mRNA_L-elsbetiae_contig17177.4775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MKLPCLALNLWALSFVEGFQAPTRIHSATRRVSTPPWSCHGIQRLPSTLS
REKLSRERLLSMKVEEADHDRYGGALATSAVVTVGASLFGLGEQGVS*
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mRNA from alignment at L-elsbetiae_contig17177:1050..1738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17177.4775.1 ID=mRNA_L-elsbetiae_contig17177.4775.1|Name=mRNA_L-elsbetiae_contig17177.4775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=689bp|location=Sequence derived from alignment at L-elsbetiae_contig17177:1050..1738+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCGTCTGCGGTGCTTGCCTAAGATTTTTGTCGCGAGAAGGGTTCAGCT
GTCGGCTGTCCCTTTTCCCCTCGTCGACGGTGAGGTCGAAGTTTGTGTAC
ACACACTAAGCGCTATCCACTGGCAGGGACGGAGGCAAGAGAAAAAACTC
ACTTCGCAGGAAAAAGCCGCTTCCGCTGAGATTCGAACTCACGACCTGCC
TGCTAGAAGGTGTTCGGGGGTACCAACTAGCCAACTAGAAGACCCAACTG
TCCTCTAGGATACATAGCCCTAGACTACATACTCCATACATAAAAGCGCG
GATGAGAAAGTGCGGCGTGATTCATTCGTAACGGCATGATCCACGTACCC
CCTATGCAGGCCTTCGCCACAACCCGCATCTGGCCACCACGTCACATGAA
GCTACCATGCCTGGCGCTCAACTTGTGGGCGCTAAGCTTCGTCGAAGGGT
TCCAGGCACCTACAAGAATACATTCTGCAACGCGCAGAGTTTCAACCCCA
CCTTGGTCTTGTCATGGCATCCAGCGCTTGCCATCCACACTATCTCGGGA
GAAGTTGTCTAGGGAGAGGTTGCTGTCGATGAAGGTGGAGGAGGCGGATC
ATGACCGTTACGGGGGTGCTCTAGCAACCTCAGCTGTCGTGACCGTGGGT
GCTTCCTTGTTCGGCTTAGGTGAGCAAGGCGTCTCGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17177:1050..1738+

>mRNA_L-elsbetiae_contig17177.4775.1 ID=mRNA_L-elsbetiae_contig17177.4775.1|Name=mRNA_L-elsbetiae_contig17177.4775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig17177:1050..1738+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCTACCATGCCTGGCGCTCAACTTGTGGGCGCTAAGCTTCGTCGA
AGGGTTCCAGGCACCTACAAGAATACATTCTGCAACGCGCAGAGTTTCAA
CCCCACCTTGGTCTTGTCATGGCATCCAGCGCTTGCCATCCACACTATCT
CGGGAGAAGTTGTCTAGGGAGAGGTTGCTGTCGATGAAGGTGGAGGAGGC
GGATCATGACCGTTACGGGGGTGCTCTAGCAACCTCAGCTGTCGTGACCG
TGGGTGCTTCCTTGTTCGGCTTAGGTGAGCAAGGCGTCTCGTAGATGAAG
CTACCATGCCTGGCGCTCAACTTGTGGGCGCTAAGCTTCGTCGAAGGGTT
CCAGGCACCTACAAGAATACATTCTGCAACGCGCAGAGTTTCAACCCCAC
CTTGGTCTTGTCATGGCATCCAGCGCTTGCCATCCACACTATCTCGGGAG
AAGTTGTCTAGGGAGAGGTTGCTGTCGATGAAGGTGGAGGAGGCGGATCA
TGACCGTTACGGGGGTGCTCTAGCAACCTCAGCTGTCGTGACCGTGGGTG
CTTCCTTGTTCGGCTTAGGTGAGCAAGGCGTCTCGTAG
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