mRNA_L-elsbetiae_contig17157.4770.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17157.4770.1
Unique NamemRNA_L-elsbetiae_contig17157.4770.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17157.4770.1 vs. uniprot
Match: A0A6H5JUK6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.140e-20
Identity = 121/152 (79.61%), Postives = 124/152 (81.58%), Query Frame = 1 
Query:    1 ISFDVTHIHYTPTCRKKKVRIWDWEYYKEERALTGHGWDVKTVEWHPYKSLIVSGSKDNLIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPQHERLLASGGYDGKMMYWTVG 456
            +SF  T   +        VRIWDWEYYKEERALTGHGWDVKTVEWHPYK             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PQHERLLASGGYDGKMMYW +G
Sbjct:   18 LSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHPYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQHERLLASGGYDGKMMYWVIG 169
[Close]
BLAST of mRNA_L-elsbetiae_contig17157.4770.1 vs. uniprot
Match: A0A4S4L1Z3_9AGAM (Polyadenylation factor subunit 2 n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L1Z3_9AGAM)

HSP 1 Score: 76.6 bits (187), Expect = 2.000e-13
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   55 VRIWDWEYYKEERALTGHGWDVKTVEWHPYKSLIVSGSKDNLIK 186
            VRIWD+E  +EER L+GHGWDV+ V+WHP K L+VSGSKDNL+K
Sbjct:  235 VRIWDFEESREERVLSGHGWDVRCVQWHPTKGLLVSGSKDNLVK 278
[Close]
BLAST of mRNA_L-elsbetiae_contig17157.4770.1 vs. uniprot
Match: UPI0020082375 (WD40 repeat-like protein n=1 Tax=Epithele typhae TaxID=378194 RepID=UPI0020082375)

HSP 1 Score: 76.3 bits (186), Expect = 2.690e-13
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 ISFDVTHIHYTPTCRKKKVRIWDWEYYKEERALTGHGWDVKTVEWHPYKSLIVSGSKDNLIK 186
            +SF      +        +R+W +E  + ER LTGHGWDVK VEWHP K L+VSGSKDN+IK
Sbjct:  173 LSFSPDDTRFATASDDSTIRLWSFEEQRAERTLTGHGWDVKCVEWHPSKGLLVSGSKDNMIK 234
[Close]
BLAST of mRNA_L-elsbetiae_contig17157.4770.1 vs. uniprot
Match: A0A8H8SNN8_9AGAM (Polyadenylation factor subunit 2 n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8SNN8_9AGAM)

HSP 1 Score: 75.1 bits (183), Expect = 6.790e-13
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   55 VRIWDWEYYKEERALTGHGWDVKTVEWHPYKSLIVSGSKDNLIK 186
            VR+W +E  +EER +TGHGWDVK +EWHP + L+VSGSKDNL+K
Sbjct:  231 VRVWAFEEMREERCITGHGWDVKCIEWHPTRGLLVSGSKDNLVK 274
[Close]
BLAST of mRNA_L-elsbetiae_contig17157.4770.1 vs. uniprot
Match: A0A444XAA3_ARAHY (Uncharacterized protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444XAA3_ARAHY)

HSP 1 Score: 73.9 bits (180), Expect = 1.700e-12
Identity = 97/155 (62.58%), Postives = 111/155 (71.61%), Query Frame = 1 
Query:    1 ISFDVTHIHYTPTCRKKKVRIWDWEYYKEERALTG---HGWDVKTVEWHPYKSLIVSGSKDNLIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPQHERLLASGGYDGKMMYWTVG 456
            +SF  T + +        V++WD+   +EER+LTG   HGWDVK+V+WHP KSL+VSG KD L+K              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHP HE    SG YDG + +W VG
Sbjct:   55 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGNAGHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDAKTGRELCSFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFHEEYFVSGSYDGAIFHWLVG 209
[Close]
BLAST of mRNA_L-elsbetiae_contig17157.4770.1 vs. uniprot
Match: A0A074S8B2_9AGAM (Polyadenylation factor subunit 2 n=13 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A074S8B2_9AGAM)

HSP 1 Score: 73.6 bits (179), Expect = 2.320e-12
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   55 VRIWDWEYYKEERALTGHGWDVKTVEWHPYKSLIVSGSKDNLIK 186
            VRIW +   +EER +TGHGWDVK VEWHP + LIVSGSKDNL+K
Sbjct:  230 VRIWAFGETREERCITGHGWDVKCVEWHPTRGLIVSGSKDNLVK 273
[Close]
BLAST of mRNA_L-elsbetiae_contig17157.4770.1 vs. uniprot
Match: A9TB41_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TB41_PHYPA)

HSP 1 Score: 72.0 bits (175), Expect = 4.280e-12
Identity = 93/134 (69.40%), Postives = 106/134 (79.10%), Query Frame = 1 
Query:   58 RIWDWEYYKEERA-LTGHGWDVKTVEWHPYKSLIVSGSKDNLIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPQHERLLASGGYDGKMMYWTVG 456
            ++WD+   +EE   LTGHGWDVK+V+WHP K+L+VSG+KDNL+K              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHP HE L  SG YDG +++W VG
Sbjct:  123 KVWDFARCQEESVYLTGHGWDVKSVDWHPQKALLVSGAKDNLVKLWDAKTGRVLCTLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFHEDLFVSGSYDGSIIHWLVG 256
[Close]
BLAST of mRNA_L-elsbetiae_contig17157.4770.1 vs. uniprot
Match: A0A830DFI8_9LAMI (Flowering time control protein fy n=2 Tax=Orobanchaceae TaxID=91896 RepID=A0A830DFI8_9LAMI)

HSP 1 Score: 72.4 bits (176), Expect = 6.170e-12
Identity = 95/137 (69.34%), Postives = 106/137 (77.37%), Query Frame = 1 
Query:   55 VRIWDWEYYKEERALTG---HGWDVKTVEWHPYKSLIVSGSKDNLIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPQHERLLASGGYDGKMMYWTVG 456
            V++WD+   +EER+LTG   HGWDVK V+WHP KSL+VSG KDNL+K             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHP HE    SG +DG + +W VG
Sbjct:  294 VKVWDFARCQEERSLTGDAGHGWDVKCVDWHPTKSLLVSGGKDNLVKLWDAKSGRELSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPFHEEYFVSGSFDGSIFHWLVG 430
[Close]
BLAST of mRNA_L-elsbetiae_contig17157.4770.1 vs. uniprot
Match: G4T5A0_SERID (Polyadenylation factor subunit 2 n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4T5A0_SERID)

HSP 1 Score: 72.0 bits (175), Expect = 6.240e-12
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 ISFDVTHIHYTPTCRKKKVRIWDWEYYKEERALTGHGWDVKTVEWHPYKSLIVSGSKDNLIK 186
            ISF      +        ++IW +   +EER LTGHGWDV+ V+WHP K L+ SGSKDNLIK
Sbjct:   31 ISFSPNDARFVTCSDDSTLKIWAFNESREERTLTGHGWDVRCVQWHPSKGLLASGSKDNLIK 92
[Close]
BLAST of mRNA_L-elsbetiae_contig17157.4770.1 vs. uniprot
Match: A0A4S4MWX9_9APHY (Polyadenylation factor subunit 2 n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4MWX9_9APHY)

HSP 1 Score: 72.0 bits (175), Expect = 7.680e-12
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 ISFDVTHIHYTPTCRKKKVRIWDWEYYKEERALTGHGWDVKTVEWHPYKSLIVSGSKDNLIK 186
            +SF      +        +RIW ++  +EE  LTGHGWDVK VEWHP K L+ SGSKDN+IK
Sbjct:  143 LSFSPDDSRFATASDDSTIRIWAFDESREESVLTGHGWDVKCVEWHPSKGLLSSGSKDNMIK 204
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17157.4770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUK6_9PHAE2.140e-2079.61CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A4S4L1Z3_9AGAM2.000e-1370.45Polyadenylation factor subunit 2 n=1 Tax=Phellinid... [more]
UPI00200823752.690e-1351.61WD40 repeat-like protein n=1 Tax=Epithele typhae T... [more]
A0A8H8SNN8_9AGAM6.790e-1365.91Polyadenylation factor subunit 2 n=2 Tax=Ceratobas... [more]
A0A444XAA3_ARAHY1.700e-1262.58Uncharacterized protein n=1 Tax=Arachis hypogaea T... [more]
A0A074S8B2_9AGAM2.320e-1270.45Polyadenylation factor subunit 2 n=13 Tax=Rhizocto... [more]
A9TB41_PHYPA4.280e-1269.40Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
A0A830DFI8_9LAMI6.170e-1269.34Flowering time control protein fy n=2 Tax=Orobanch... [more]
G4T5A0_SERID6.240e-1250.00Polyadenylation factor subunit 2 n=1 Tax=Serendipi... [more]
A0A4S4MWX9_9APHY7.680e-1250.00Polyadenylation factor subunit 2 n=1 Tax=Antrodiel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17157contigL-elsbetiae_contig17157:1127..3338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue9.2e-11
Seed eggNOG ortholog44056.XP_009032631.1
Preferred nameWDR33
KEGG koko:K15542
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005847,GO:0005849,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019438,GO:0019953,GO:0022414,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045184,GO:0046483,GO:0046907,GO:0048232,GO:0048609,GO:0050657,GO:0050658,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098787,GO:0098789,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG2319@1,KOG0284@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons3
Model size456
Cds size456
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17157.4770.1prot_L-elsbetiae_contig17157.4770.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17157 1127..3338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.2475936-CDS-L-elsbetiae_contig17157:1126..12281622815715.2475936-CDS-L-elsbetiae_contig17157:1126..1228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17157 1127..1228 -
1691683055.4327762-CDS-L-elsbetiae_contig17157:1126..12281691683055.4327762-CDS-L-elsbetiae_contig17157:1126..1228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17157 1127..1228 -
1622815715.2589808-CDS-L-elsbetiae_contig17157:2218..23201622815715.2589808-CDS-L-elsbetiae_contig17157:2218..2320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17157 2219..2320 -
1691683055.4436946-CDS-L-elsbetiae_contig17157:2218..23201691683055.4436946-CDS-L-elsbetiae_contig17157:2218..2320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17157 2219..2320 -
1622815715.2707999-CDS-L-elsbetiae_contig17157:3086..33381622815715.2707999-CDS-L-elsbetiae_contig17157:3086..3338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17157 3087..3338 -
1691683055.4521062-CDS-L-elsbetiae_contig17157:3086..33381691683055.4521062-CDS-L-elsbetiae_contig17157:3086..3338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17157 3087..3338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17157.4770.1

>prot_L-elsbetiae_contig17157.4770.1 ID=prot_L-elsbetiae_contig17157.4770.1|Name=mRNA_L-elsbetiae_contig17157.4770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
ISFDVTHIHYTPTCRKKKVRIWDWEYYKEERALTGHGWDVKTVEWHPYKS
LIVSGSKDNLIKLWDPRTGNSLSTLYGHKNTVMKVTWNKNGNWLVSCSRD
QTIKLYDIRTMKDMSTFKGHGQDVTALAWHPQHERLLASGGYDGKMMYWT
VG
back to top

mRNA from alignment at L-elsbetiae_contig17157:1127..3338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17157.4770.1 ID=mRNA_L-elsbetiae_contig17157.4770.1|Name=mRNA_L-elsbetiae_contig17157.4770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2212bp|location=Sequence derived from alignment at L-elsbetiae_contig17157:1127..3338- (Laminarionema elsbetiae ELsaHSoW15)
ATCTCTTTCGACGTTACACACATTCATTACACTCCCACGTGTCGCAAAAA
AAAGGTGCGCATCTGGGACTGGGAGTACTACAAGGAGGAGCGGGCGCTGA
CGGGCCACGGGTGGGACGTCAAGACCGTGGAGTGGCATCCGTACAAGTCT
CTCATCGTGTCGGGGAGCAAGGATAACCTCATCAAGCTCTGGGACCCGAG
GACGGGGAACAGCCTGAGCACTCTGTACGGCCACAAGAACACGGTCATGA
AGGTGATAAATAAGTAGCGCGCGCGCGCGCGTATGAGTGTGTGTGTTTGG
GTCGTGGCTGCTTCGTCTATACAGTAGTGTGGCATTTTCCGGGGCGCCCG
TTGTGGTTTGTTGCGTTGTTGCTCAATACTGCAACTGCCTCTGCTGGTGG
TTTGCGTGTAGCCGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTG
CTGCTGCTGTCTCGTCCGCCTGTTTCAGATCGTGTCCATGCTTGTGTGTG
TCGTGGCTGCTTGCTCTGGTGTGGCGTTTCGATGTTGTTTGTTGTTGTTG
TTGTTGTTGCCCTTGTTGTTGCCGTTGTCGTTTCCACTTTTTGCTTTTTG
CTGTCGTCCATCTGTCTGTGTCGAATCCTGCCAATGTTTTGTTTTTGTGT
ATGTACCCCGTGGTGTTTTCGTGCATGCATGCTGTCTATGTAACGTTCAG
ATGTCGAAGGGCGCACTTGTGCTTTCGTTTTTTTTTCATTTGTTTGTTGT
GTGCTCTTGGTGCTGTGCGGCGCGGTGCAATGTTGTACGGTGGTAACGGT
GCGGTACGATGCGGTACGGTGCGATGCGGTGCGTTGTGGTACGATGCGGT
ACAATACGATGCGATGCGATGCGGCACGATGCGGTGCAATACAAGCGGTA
CGATGCAATGCGATGCGATGCGGTGCGATGTGATGTGACGTGTGCGTTTT
ACATACATTCAATGCCCTTCCCATATAGATTAAAATAGCATGAAATGAAA
TAAAAAATAAATAAAAAGGTGACGTGGAACAAGAACGGGAATTGGCTGGT
CTCCTGCTCAAGAGACCAGACGATCAAGCTGTACGACATCCGCACCATGA
AGGACATGAGCACCTTCAAGGTGGGGGTGGCGGCGTATTTTGGTGCATCT
TATCGTCTGCCCAACAAAAGCCGGACATTAATGCTTAATTCTTCACTGGG
GTCTGTATGGATTAGTTGAACTTGGCTCTGCGTGTATTTATTATCTGTTA
CAAATAGGAAGAGCCTTATATGGAAACTGCTTGAAACTGCCATGGTTGAC
GCGCATGGTTTGGCAGGTGGGAGAGGATTCGTAGAACTGTTCTTCCGCAC
CCACCGACTGGTTAGTTCACAGACAGCAGCCGGGCTAATTGTTTTCTCCT
TTGGCTCCTCCTACCCTGGAGAAAAGGCGTAGGTATTTACTACTACTGTG
TACGCAGAAGAGCGGATCCATCGTCCCCACACACAAAACCTGGGTACGTG
TGTACCCGCAGCATTATTATTTGTGTATTTCGTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGCTGTTTCTTCACATTGAAAAAGGTTCCGATCTCTCCACC
CACCAGTACCTCCGTATGCCCGTGCTATTAGTCTATGTATGTACTCGTGC
CCCCAATATGTCTTCGCGAAACCCGGGTATGAACGGGGTTATGTCACCTT
TGTTTATCTCTTGGATATATTCAGCGGTTGCCAGCCCAAACGGCGCGCGC
CTCTCGAGGCTCTCTGCCTCTTGCTTTACACAGCCTGTCTTGAGTGCTAG
GGTATTGGCTTAAGCTAGACAGCTTCATGTAGGGAGGGTCTGCTTCATGT
ACCCACCCCCCCCCCCCCTCCGCCTTCCCAGCAGCGAAATTACGCCGACT
CCAGTCCTCCTCGCAGTGGCTGACCGATGTTTTTTGCACGGCGACACTAG
TATCTTGAGCCGAGGCAAACTGAACTGAACTGAACGGAACGGAACTGAAC
GGAACTGAATTGAACGGAGCAGCCGAGGTGAATCTAACTGAACCAAGATT
AATTGAACCGCACCGAACCGAATCGAACCGAACCGAACCGAACCGCACCG
CACCGGACAGGGCCACGGGCAGGACGTGACTGCGTTGGCGTGGCACCCTC
AGCACGAGCGGCTGCTGGCTAGCGGAGGCTACGACGGGAAGATGATGTAC
TGGACCGTCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17157:1127..3338-

>mRNA_L-elsbetiae_contig17157.4770.1 ID=mRNA_L-elsbetiae_contig17157.4770.1|Name=mRNA_L-elsbetiae_contig17157.4770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig17157:1127..3338- (Laminarionema elsbetiae ELsaHSoW15)
ATCTCTTTCGACGTTACACACATTCATTACACTCCCACGTGTCGCAAAAA
AAAGGTGCGCATCTGGGACTGGGAGTACTACAAGGAGGAGCGGGCGCTGA
CGGGCCACGGGTGGGACGTCAAGACCGTGGAGTGGCATCCGTACAAGTCT
CTCATCGTGTCGGGGAGCAAGGATAACCTCATCAAGCTCTGGGACCCGAG
GACGGGGAACAGCCTGAGCACTCTGTACGGCCACAAGAACACGGTCATGA
AGATCTCTTTCGACGTTACACACATTCATTACACTCCCACGTGTCGCAAA
AAAAAGGTGCGCATCTGGGACTGGGAGTACTACAAGGAGGAGCGGGCGCT
GACGGGCCACGGGTGGGACGTCAAGACCGTGGAGTGGCATCCGTACAAGT
CTCTCATCGTGTCGGGGAGCAAGGATAACCTCATCAAGCTCTGGGACCCG
AGGACGGGGAACAGCCTGAGCACTCTGTACGGCCACAAGAACACGGTCAT
GAAGGTGACGTGGAACAAGAACGGGAATTGGCTGGTCTCCTGCTCAAGAG
ACCAGACGATCAAGCTGTACGACATCCGCACCATGAAGGACATGAGCACC
TTCAAGGTGACGTGGAACAAGAACGGGAATTGGCTGGTCTCCTGCTCAAG
AGACCAGACGATCAAGCTGTACGACATCCGCACCATGAAGGACATGAGCA
CCTTCAAGGGCCACGGGCAGGACGTGACTGCGTTGGCGTGGCACCCTCAG
CACGAGCGGCTGCTGGCTAGCGGAGGCTACGACGGGAAGATGATGTACTG
GACCGTCGGGGGCCACGGGCAGGACGTGACTGCGTTGGCGTGGCACCCTC
AGCACGAGCGGCTGCTGGCTAGCGGAGGCTACGACGGGAAGATGATGTAC
TGGACCGTCGGG
back to top