mRNA_L-elsbetiae_contig1715.4768.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1715.4768.1
Unique NamemRNA_L-elsbetiae_contig1715.4768.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1715.4768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1715contigL-elsbetiae_contig1715:11420..12145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002840.2
Exons2
Model size351
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.8050125-CDS-L-elsbetiae_contig1715:11420..114541622815714.8050125-CDS-L-elsbetiae_contig1715:11420..11454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1715 11421..11454 -
1691683055.2304626-CDS-L-elsbetiae_contig1715:11420..114541691683055.2304626-CDS-L-elsbetiae_contig1715:11420..11454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1715 11421..11454 -
1622815714.821085-CDS-L-elsbetiae_contig1715:11831..121451622815714.821085-CDS-L-elsbetiae_contig1715:11831..12145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1715 11832..12145 -
1691683055.2427604-CDS-L-elsbetiae_contig1715:11831..121451691683055.2427604-CDS-L-elsbetiae_contig1715:11831..12145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1715 11832..12145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1715.4768.1prot_L-elsbetiae_contig1715.4768.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1715 11421..12145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1715.4768.1

>prot_L-elsbetiae_contig1715.4768.1 ID=prot_L-elsbetiae_contig1715.4768.1|Name=mRNA_L-elsbetiae_contig1715.4768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
IRPADRGYYGRGSDPYRGEHEGRAPRMAPAPRQRAVPEHDLNGCVAHGKH
HNVSRGEGLRSRSLSRSCPESRLRSRSGSPPPRRGSDKGGRNTSGGKGQS
STQNRRRRYDPSLEQA
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mRNA from alignment at L-elsbetiae_contig1715:11420..12145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1715.4768.1 ID=mRNA_L-elsbetiae_contig1715.4768.1|Name=mRNA_L-elsbetiae_contig1715.4768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig1715:11420..12145- (Laminarionema elsbetiae ELsaHSoW15)
ATCAGACCAGCGGATCGTGGATACTACGGGCGGGGAAGCGATCCATACCG
CGGTGAGCATGAAGGGCGGGCTCCTCGGATGGCACCAGCCCCTCGACAGC
GAGCAGTTCCCGAGCACGACTTGAATGGCTGTGTTGCTCATGGGAAACAC
CACAATGTTTCCCGGGGGGAGGGTTTGCGGTCTCGCTCGCTGTCAAGGTC
CTGTCCAGAGTCGCGGCTGCGGTCCAGGTCAGGATCTCCGCCGCCCAGAC
GCGGCAGCGACAAGGGGGGCCGCAACACGAGCGGCGGCAAGGGTCAAAGC
AGCACTCAAAACAGGTGCGAGGCAAAGCCCTGGAAAGTGCTCTACGTTTA
CCCGAAACTCCCCTCTGCTTTTACATACACCTCCCAGGGCCTTCAGTGTT
CGGGTGGCCACCAACAGTGTTGTCTCCACAGAAAGTAACCAAAAGCTTTC
TTTAATTTTCCTGCTAGCATACAATATACCTGGAAGCACAGAAACCTCTG
TTATGTAGACTGCTCTCTTGAATGAGGGTCAGAGAGCCACAGCATATGCA
GCTCAACCTTGTGACATCAAGTGTAATTGAGGTCACAGGTTGACGGAAGC
GAGGCCTGGATCGAGTGGCACACAAATGTGCATGTGCGCCATGTGAGCTT
CGAAATCGTCTTAACTTTTGAGCGACGTCTTTTCTATTCAGGAGGAGGCG
CTACGACCCATCTTTGGAACAAGCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1715:11420..12145-

>mRNA_L-elsbetiae_contig1715.4768.1 ID=mRNA_L-elsbetiae_contig1715.4768.1|Name=mRNA_L-elsbetiae_contig1715.4768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig1715:11420..12145- (Laminarionema elsbetiae ELsaHSoW15)
ATCAGACCAGCGGATCGTGGATACTACGGGCGGGGAAGCGATCCATACCG
CGGTGAGCATGAAGGGCGGGCTCCTCGGATGGCACCAGCCCCTCGACAGC
GAGCAGTTCCCGAGCACGACTTGAATGGCTGTGTTGCTCATGGGAAACAC
CACAATGTTTCCCGGGGGGAGGGTTTGCGGTCTCGCTCGCTGTCAAGGTC
CTGTCCAGAGTCGCGGCTGCGGTCCAGGTCAGGATCTCCGCCGCCCAGAC
GCGGCAGCGACAAGGGGGGCCGCAACACGAGCGGCGGCAAGGGTCAAAGC
AGCACTCAAAACAGATCAGACCAGCGGATCGTGGATACTACGGGCGGGGA
AGCGATCCATACCGCGGTGAGCATGAAGGGCGGGCTCCTCGGATGGCACC
AGCCCCTCGACAGCGAGCAGTTCCCGAGCACGACTTGAATGGCTGTGTTG
CTCATGGGAAACACCACAATGTTTCCCGGGGGGAGGGTTTGCGGTCTCGC
TCGCTGTCAAGGTCCTGTCCAGAGTCGCGGCTGCGGTCCAGGTCAGGATC
TCCGCCGCCCAGACGCGGCAGCGACAAGGGGGGCCGCAACACGAGCGGCG
GCAAGGGTCAAAGCAGCACTCAAAACAGGAGGAGGCGCTACGACCCATCT
TTGGAACAAGCGGAGGAGGCGCTACGACCCATCTTTGGAACAAGCG
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