mRNA_L-elsbetiae_contig17127.4760.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17127.4760.1
Unique NamemRNA_L-elsbetiae_contig17127.4760.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17127.4760.1 vs. uniprot
Match: A0A6H5LAN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN0_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 6.620e-41
Identity = 71/77 (92.21%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:    1 RLPGESQKVDRLVSSFAECYVADNRDNPSCPFSNSDTPFILSFAVIMLNTDLHRANTGTGRRRRRRMTKEDFINNLR 231
            RLPGESQKVDRLVSSFAECYVADNRDNP+CPF+N++TPFILSFA+IMLNTDLHRANTGTGRRRRRRMTKEDFI+NLR
Sbjct:  383 RLPGESQKVDRLVSSFAECYVADNRDNPTCPFTNAETPFILSFAIIMLNTDLHRANTGTGRRRRRRMTKEDFISNLR 459
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BLAST of mRNA_L-elsbetiae_contig17127.4760.1 vs. uniprot
Match: D8LKD8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD8_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.280e-40
Identity = 70/76 (92.11%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:    1 RLPGESQKVDRLVSSFAECYVADNRDNPSCPFSNSDTPFILSFAVIMLNTDLHRANTGTGRRRRRRMTKEDFINNL 228
            RLPGESQKVDRLVSSFAECYVADNRDNP+CPF+N+DTPFILSFA+IMLNTDLHRAN GTGRRRRRRMTKEDFI+NL
Sbjct:  386 RLPGESQKVDRLVSSFAECYVADNRDNPTCPFANADTPFILSFAIIMLNTDLHRANAGTGRRRRRRMTKEDFISNL 461
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BLAST of mRNA_L-elsbetiae_contig17127.4760.1 vs. uniprot
Match: A0A7R9YDJ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDJ0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.050e-24
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 RLPGESQKVDRLVSSFAECYVADNRDNPSCPFSNSDTPFILSFAVIMLNTDLHRANTGTGRRRRRRMTKEDFINNLR 231
            +LPGE+QKVDR++S+F   Y  DN+  P CPFSNSDT F+++FAVIMLNTDLHRANT + + R RRMTK+DF+ NLR
Sbjct: 1358 KLPGEAQKVDRILSTFCVRYWEDNKGTPVCPFSNSDTMFVVAFAVIMLNTDLHRANTDS-KNRHRRMTKQDFVRNLR 1433
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BLAST of mRNA_L-elsbetiae_contig17127.4760.1 vs. uniprot
Match: A0A7S1TSV1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSV1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.430e-24
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 RLPGESQKVDRLVSSFAECYVADNRDNPSCPFSNSDTPFILSFAVIMLNTDLHRANTGTGRRRRRRMTKEDFINNLR 231
            +LPGE+QKVDR++S+F   Y ADN+  P CPF NSDT F+++FAVIMLNTDLHRANTG+ + R RRMTK+DF  NLR
Sbjct: 1366 KLPGEAQKVDRILSTFCLRYWADNQGTPVCPFMNSDTMFVVAFAVIMLNTDLHRANTGS-KNRHRRMTKQDFQRNLR 1441
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BLAST of mRNA_L-elsbetiae_contig17127.4760.1 vs. uniprot
Match: W7U6C9_9STRA (Brefeldin a-inhibited guanine nucleotide-exchange n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 9.900e-22
Identity = 49/82 (59.76%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    1 RLPGESQKVDRLVSSFAECYVADNRDNPSCPFSNSDTPFILSFAVIMLNTDLHRANTGTGRRRRRR-----MTKEDFINNLR 231
            RLPGE+QK+DRL+S FAECY  DN+  P CPFS  DTP+ILS+A+I+L TDLH+     G++R R      MTKE FINNLR
Sbjct: 1404 RLPGEAQKIDRLISVFAECYFQDNQGMPCCPFSQPDTPYILSYAIIILQTDLHKVG---GQKRGRGKVNKPMTKEAFINNLR 1482
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BLAST of mRNA_L-elsbetiae_contig17127.4760.1 vs. uniprot
Match: A0A7S2UHG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHG8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.130e-21
Identity = 44/82 (53.66%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:    1 RLPGESQKVDRLVSSFAECYVADNR-DNPSCPFSNSDTPFILSFAVIMLNTDLHRA----NTGTGRRRRRRMTKEDFINNLR 231
            RLPGE+Q++DR++++F++CY  DN  D+  CPF + DT F++SFA+IMLNTDLH++    N+G  RR+R+RMT+ +F+NNLR
Sbjct:  348 RLPGEAQRIDRIMTTFSQCYWEDNAGDHFRCPFLDQDTVFLISFAIIMLNTDLHKSSMGSNSGGSRRQRKRMTRPEFLNNLR 429
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BLAST of mRNA_L-elsbetiae_contig17127.4760.1 vs. uniprot
Match: A0A7S4QRS1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QRS1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.690e-21
Identity = 45/84 (53.57%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    1 RLPGESQKVDRLVSSFAECYVADNR-DNPSCPFSNSDTPFILSFAVIMLNTDLHRANTGTG------RRRRRRMTKEDFINNLR 231
            RLPGE+QK+DR++S+F++CY  DN  D+  CPF + DT F++SFA+IMLNTDLH+  + +G      R++R+RMTK +F+NNLR
Sbjct: 1532 RLPGEAQKIDRIISTFSQCYWEDNAGDHLRCPFHDQDTVFLISFAIIMLNTDLHKNKSVSGAPSTSSRKQRKRMTKTEFMNNLR 1615
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BLAST of mRNA_L-elsbetiae_contig17127.4760.1 vs. uniprot
Match: K0RXB3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXB3_THAOC)

HSP 1 Score: 93.6 bits (231), Expect = 1.630e-20
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 RLPGESQKVDRLVSSFAECYVADNR-DNPSCPFSNSDTPFILSFAVIMLNTDLHRANTGTGRRRRRRMTKEDFINNLR 231
            RLPGE+QKVDR+VS+F++C+  DN  D  +CPF N DT F++SFA+IMLN+DLH+AN     +  +RMTKE+F+ NLR
Sbjct: 1299 RLPGEAQKVDRIVSTFSQCFWEDNAADIRNCPFQNQDTVFVVSFAIIMLNSDLHKANANG--KSIKRMTKEEFVKNLR 1374
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BLAST of mRNA_L-elsbetiae_contig17127.4760.1 vs. uniprot
Match: A0A7S2YTR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YTR7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.580e-20
Identity = 43/77 (55.84%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    4 LPGESQKVDRLVSSFAECYVADNRDNPS-CPFSNSDTPFILSFAVIMLNTDLHRANTGTGRRRRRRMTKEDFINNLR 231
            LPGE+QK+DR++++FAEC+  DN  + S CPF + D  ++LSFAVI+LNTDLH+A+   GRR +++MTK+DFI N+R
Sbjct:  424 LPGEAQKIDRIINTFAECFFEDNAGDVSICPFPSEDEVYLLSFAVILLNTDLHKASE-RGRRGKKKMTKQDFIANIR 499
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BLAST of mRNA_L-elsbetiae_contig17127.4760.1 vs. uniprot
Match: A0A7R9VJ36_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VJ36_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.030e-19
Identity = 43/85 (50.59%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    1 RLPGESQKVDRLVSSFAECYVADNR-DNPSCPFSNSDTPFILSFAVIMLNTDLHRANTG------TGR-RRRRRMTKEDFINNLR 231
            RLPGE+Q++DR++S+F++CY  DN  D+  CPF + DT F++SFA+IMLNTDLH++  G      +GR ++R++M++ +FINNLR
Sbjct:  166 RLPGEAQRIDRIISTFSQCYWEDNAGDHNRCPFQDQDTVFLISFAIIMLNTDLHKSQMGGTGGSSSGRSKQRKKMSRAEFINNLR 250
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17127.4760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAN0_9PHAE6.620e-4192.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKD8_ECTSI2.280e-4092.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7R9YDJ0_9STRA1.050e-2464.94Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1TSV1_9STRA1.430e-2466.23Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
W7U6C9_9STRA9.900e-2259.76Brefeldin a-inhibited guanine nucleotide-exchange ... [more]
A0A7S2UHG8_9STRA2.130e-2153.66Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4QRS1_9STRA4.690e-2153.57Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0RXB3_THAOC1.630e-2057.69Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2YTR7_9STRA7.580e-2055.84Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7R9VJ36_9STRA1.030e-1950.59Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17127contigL-elsbetiae_contig17127:498..2028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue6.8e-34
Seed eggNOG ortholog2880.D8LKD8
Preferred nameYEL1
KEGG koko:K12494,ko:K17362,ko:K18442
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001558,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005794,GO:0005933,GO:0005934,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0007163,GO:0008104,GO:0008150,GO:0008289,GO:0008360,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010511,GO:0010513,GO:0010562,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019216,GO:0019220,GO:0019222,GO:0019899,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0030010,GO:0030427,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0032012,GO:0032014,GO:0032153,GO:0032940,GO:0033036,GO:0033554,GO:0034613,GO:0034976,GO:0035091,GO:0040008,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045834,GO:0045937,GO:0046578,GO:0046579,GO:0046889,GO:0046890,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051056,GO:0051057,GO:0051128,GO:0051174,GO:0051179,GO:0051234,GO:0051285,GO:0051286,GO:0051523,GO:0051641,GO:0051649,GO:0051666,GO:0051716,GO:0061171,GO:0061389,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0071071,GO:0071073,GO:0071702,GO:0071705,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:0099568,GO:0099738,GO:1901981,GO:1902531,GO:1902533,GO:1903725,GO:1903727
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0929@2759,KOG1729@1,KOG1729@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko04131
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.283983-CDS-L-elsbetiae_contig17127:497..6581622815714.283983-CDS-L-elsbetiae_contig17127:497..658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17127 498..658 +
1691683054.9082303-CDS-L-elsbetiae_contig17127:497..6581691683054.9082303-CDS-L-elsbetiae_contig17127:497..658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17127 498..658 +
1622815714.2982953-CDS-L-elsbetiae_contig17127:1955..20281622815714.2982953-CDS-L-elsbetiae_contig17127:1955..2028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17127 1956..2028 +
1691683054.9218242-CDS-L-elsbetiae_contig17127:1955..20281691683054.9218242-CDS-L-elsbetiae_contig17127:1955..2028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17127 1956..2028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17127.4760.1prot_L-elsbetiae_contig17127.4760.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17127 498..2028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17127.4760.1

>prot_L-elsbetiae_contig17127.4760.1 ID=prot_L-elsbetiae_contig17127.4760.1|Name=mRNA_L-elsbetiae_contig17127.4760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
RLPGESQKVDRLVSSFAECYVADNRDNPSCPFSNSDTPFILSFAVIMLNT
DLHRANTGTGRRRRRRMTKEDFINNLR*
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mRNA from alignment at L-elsbetiae_contig17127:498..2028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17127.4760.1 ID=mRNA_L-elsbetiae_contig17127.4760.1|Name=mRNA_L-elsbetiae_contig17127.4760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1531bp|location=Sequence derived from alignment at L-elsbetiae_contig17127:498..2028+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCTCCCGGGGGAGTCGCAGAAGGTGGACCGGCTGGTGTCGTCGTTCGC
AGAGTGCTACGTGGCCGACAACAGGGATAACCCTTCGTGCCCCTTCTCCA
ACTCGGATACGCCGTTCATCCTGTCCTTCGCCGTCATCATGCTCAACACC
GACCTTCACAGGTAAGCGTGGGTGCGGGGTTGGGGGGGGGGGGGTCTTTT
TTAATATTGTATACGAATGTCAGCAGCCTACGTCCAGCCTGTGTAAAAGT
CGTTCCAGAGGGAACTGTTGTAAGGCATACTACCCCCCCCCCCCCCCCCC
CCCACCTTTTATCCCCGCCCCAAACCCCTTTACCCCCCCCGAAAAAACCA
GTGTTCACTCTACCCAAAGCAACTTGTCTCTGAGAAANNNNNNNNNNTTA
TAGAAGGCCGGAGGCCCCCGGCCCGCGGTGGTAAAAGTCGTGCCAGAGGG
ACCTTTTGTAAGGCCTCCCCCCCCCCCCCCCCCCCCCCCTACCTTTTATT
CCCGTCCCAAGACGTATGTACTCGCTCGCAAAGATCCGTAGTCCATTTAT
ACACAGGCAGTTCGTTGGTGAAAAATTCATTTCGAACAACTCTTTTTATG
TGTCCGCTCGCACGGACAAAACAAACAATACACCAAACTTTTTGGAGCGT
TTTGTGTCACTGTCTGCGGAGGGTCTTCGTATGTAGCTACTGTTGTAGCC
ATCGTGTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGACCCTTTTTTTTTTTAAAAAAAAAAAAAAAAGGGTGAA
AGAGAATGGGNNNNNNNNNNGGCTTCTCGTTGGTTAAAATTTTTTTTCGC
ACCTCTTTTTGGGGGGGCCCCCGCAAGCGAAAAAAAATAAACCCCCTCTT
TTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGTTGGGGTGGCAGCCGG
ACGATAGACCCATTTTATTTATCAAGAAAGTATCAAAGTGGTGAATAGGA
ACGTGTGTGTGTGTGTGGTTATTTTTTTGGTGTGGTGTATATCTTTTTTC
AATGTATTTTTGTTACTACATTGTTGTTTCTTCATATCGAAAACCGTTCC
CACCTCTCGGTGTTGTGTGTGTGTGTGTGTGTGAGTGTGTGTTTATCTTT
TTTGGCGTATATATTTTTTGGAATAAGATCACATTATATTACATCCACGC
TATTTTCCTGCGAAGAGTAAACCGAGATACATCGCCGTTGTGTGTCCCGG
ACCCCTGGAGAGACAGGCAACCACCCAACAAAATCACCGACTTACATATC
TCCTGTGTAACGGGACCCCGGTTGGTGTCGTCTAGCCAGTCGTAGTGGAG
GAAGGGGGCCAGTGGGGCAGACGACGAATATGTATGCCAAGAATAGGATG
AAAACTATAAAGAAAAAAACAAAAAACAATATCGCCGCAATGCTCGGTCG
CACAACAGGGCCAATACCGGCACGGGCCGGAGACGGAGGCGACGGATGAC
CAAGGAGGACTTCATCAATAACCTCAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17127:498..2028+

>mRNA_L-elsbetiae_contig17127.4760.1 ID=mRNA_L-elsbetiae_contig17127.4760.1|Name=mRNA_L-elsbetiae_contig17127.4760.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig17127:498..2028+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCTCCCGGGGGAGTCGCAGAAGGTGGACCGGCTGGTGTCGTCGTTCGC
AGAGTGCTACGTGGCCGACAACAGGGATAACCCTTCGTGCCCCTTCTCCA
ACTCGGATACGCCGTTCATCCTGTCCTTCGCCGTCATCATGCTCAACACC
GACCTTCACAGAGGCTCCCGGGGGAGTCGCAGAAGGTGGACCGGCTGGTG
TCGTCGTTCGCAGAGTGCTACGTGGCCGACAACAGGGATAACCCTTCGTG
CCCCTTCTCCAACTCGGATACGCCGTTCATCCTGTCCTTCGCCGTCATCA
TGCTCAACACCGACCTTCACAGGGCCAATACCGGCACGGGCCGGAGACGG
AGGCGACGGATGACCAAGGAGGACTTCATCAATAACCTCAGGTAAGGCCA
ATACCGGCACGGGCCGGAGACGGAGGCGACGGATGACCAAGGAGGACTTC
ATCAATAACCTCAGGTAA
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