mRNA_L-elsbetiae_contig17112.4754.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17112.4754.1
Unique NamemRNA_L-elsbetiae_contig17112.4754.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17112.4754.1 vs. uniprot
Match: A0A6H5KRW0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW0_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.000e-44
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    1 KNFNTSEREEVVRYLLAGSEEGVRRHGSYHQAAEKYGCHWETIKRIWQKHEEREEGGDPSAYIGNDRKGNSGRKGVDIENLRAR 252
            KNFN SEREEVVRYLLA SE+GVR+HGSYH+AAEKYGCHWETIKRIWQKHE+REE GDPS YIGNDRKG+SG KG+DIENLRAR
Sbjct:   14 KNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRAR 97
[Close]
BLAST of mRNA_L-elsbetiae_contig17112.4754.1 vs. uniprot
Match: A0A6H5KLV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV4_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 5.150e-43
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    1 KNFNTSEREEVVRYLLAGSEEGVRRHGSYHQAAEKYGCHWETIKRIWQKHEEREEGGDPSAYIGNDRKGNSGRKGVDIENLRAR 252
            KNFN SEREEVVRYLLA SE+GVR+HGSYH+AAEKYGCHWETIKRIWQKHE+REE GDPS YIGNDRKG+SG KG+DIENLRAR
Sbjct:   14 KNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRAR 97
[Close]
BLAST of mRNA_L-elsbetiae_contig17112.4754.1 vs. uniprot
Match: A0A6H5K5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M0_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 5.780e-37
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    1 KNFNTSEREEVVRYLLAGSEEGVRRHGSYHQAAEKYGCHWETIKRIWQKHEEREEGGDPSAYIGNDRKGNSGRKGVDIENLRAR 252
            KNFN  EREEV+R+LLA SE+GV RHG+Y +AAEKYGC W+TIK +W KHE+RE  GDPSAYIGN+RKGNSGRKG+D+E+LR R
Sbjct:   14 KNFNALEREEVIRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTR 97
[Close]
BLAST of mRNA_L-elsbetiae_contig17112.4754.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.530e-23
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 KNFNTSEREEVVRYLLAGSEEGVRRHGSYHQAAEKYGCHWETIKRIWQKHEEREEGGDPSAYIGNDRKGNSGRKGVDIENLRAR 252
            KNFN SE+EEV+R+LL GS+ GV  +G++  AAEK+GCHWET KR+W++++ + + G  S  + N R GNSGRKGV IE LR R
Sbjct:   14 KNFNNSEKEEVIRHLLTGSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRER 97
[Close]
BLAST of mRNA_L-elsbetiae_contig17112.4754.1 vs. uniprot
Match: A0A6H5KHK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.690e-22
Identity = 44/84 (52.38%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 KNFNTSEREEVVRYLLAGSEEGVRRHGSYHQAAEKYGCHWETIKRIWQKHEEREEGGDPSAYIGNDRKGNSGRKGVDIENLRAR 252
            KNFN  E EEV+RYLL GS+ GV R+G++ +A EK+G +WETIKR+W +++ + + G  S  I N RKGNSGR+G+ +E L+ R
Sbjct:   14 KNFNEEETEEVIRYLLPGSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKER 97
[Close]
BLAST of mRNA_L-elsbetiae_contig17112.4754.1 vs. uniprot
Match: W2QVF7_PHYPN (Uncharacterized protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QVF7_PHYPN)

HSP 1 Score: 54.7 bits (130), Expect = 5.440e-7
Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:    4 NFNTSEREEVVRYLLAGSEEGVRRHGSYHQAAEKYGCHWETIKRIWQKHEEREEGGDPSAYIGNDRKGNSGRKGVDIENLRAR 252
            N    +R  +V  LL    +G   HG++ + AE YGCHW +IKRIW ++++    G       +  KGNSGRK  D   L A+
Sbjct:    3 NLTDIQRRAIVNDLLFSCRDGKPPHGTFAKLAEVYGCHWHSIKRIWDRYQKNVAQGIADGAPESRIKGNSGRKPYDRSKLAAK 85
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17112.4754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KRW0_9PHAE2.000e-4486.90Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV4_9PHAE5.150e-4386.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5M0_9PHAE5.780e-3772.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9I0_9PHAE1.530e-2355.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHK2_9PHAE4.690e-2252.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W2QVF7_PHYPN5.440e-737.35Uncharacterized protein n=4 Tax=Phytophthora paras... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17112contigL-elsbetiae_contig17112:125..376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog164328.Phyra75254
Hectar predicted targeting categoryother localisation
EggNOG OGs2CTHC@1,2RGBC@2759,3QHYT@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.8007724-CDS-L-elsbetiae_contig17112:124..3761622815713.8007724-CDS-L-elsbetiae_contig17112:124..376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17112 125..376 -
1691683054.6116393-CDS-L-elsbetiae_contig17112:124..3761691683054.6116393-CDS-L-elsbetiae_contig17112:124..376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17112 125..376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17112.4754.1prot_L-elsbetiae_contig17112.4754.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17112 125..376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17112.4754.1

>prot_L-elsbetiae_contig17112.4754.1 ID=prot_L-elsbetiae_contig17112.4754.1|Name=mRNA_L-elsbetiae_contig17112.4754.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
KNFNTSEREEVVRYLLAGSEEGVRRHGSYHQAAEKYGCHWETIKRIWQKH
EEREEGGDPSAYIGNDRKGNSGRKGVDIENLRAR
back to top

mRNA from alignment at L-elsbetiae_contig17112:125..376-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17112.4754.1 ID=mRNA_L-elsbetiae_contig17112.4754.1|Name=mRNA_L-elsbetiae_contig17112.4754.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig17112:125..376- (Laminarionema elsbetiae ELsaHSoW15)
AAGAATTTCAACACTTCGGAGAGAGAAGAGGTGGTTCGCTACCTTCTCGC
CGGCAGCGAAGAGGGGGTTCGGCGGCATGGTTCGTACCACCAAGCTGCGG
AGAAGTACGGGTGCCATTGGGAGACAATAAAGAGGATTTGGCAGAAGCAC
GAGGAGCGGGAGGAAGGTGGAGACCCCAGTGCGTACATTGGGAACGACCG
CAAGGGCAATTCCGGCCGAAAGGGGGTCGATATTGAGAACCTACGTGCCC
GC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17112:125..376-

>mRNA_L-elsbetiae_contig17112.4754.1 ID=mRNA_L-elsbetiae_contig17112.4754.1|Name=mRNA_L-elsbetiae_contig17112.4754.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig17112:125..376- (Laminarionema elsbetiae ELsaHSoW15)
AAGAATTTCAACACTTCGGAGAGAGAAGAGGTGGTTCGCTACCTTCTCGC
CGGCAGCGAAGAGGGGGTTCGGCGGCATGGTTCGTACCACCAAGCTGCGG
AGAAGTACGGGTGCCATTGGGAGACAATAAAGAGGATTTGGCAGAAGCAC
GAGGAGCGGGAGGAAGGTGGAGACCCCAGTGCGTACATTGGGAACGACCG
CAAGGGCAATTCCGGCCGAAAGGGGGTCGATATTGAGAACCTACGTGCCC
GCAAGAATTTCAACACTTCGGAGAGAGAAGAGGTGGTTCGCTACCTTCTC
GCCGGCAGCGAAGAGGGGGTTCGGCGGCATGGTTCGTACCACCAAGCTGC
GGAGAAGTACGGGTGCCATTGGGAGACAATAAAGAGGATTTGGCAGAAGC
ACGAGGAGCGGGAGGAAGGTGGAGACCCCAGTGCGTACATTGGGAACGAC
CGCAAGGGCAATTCCGGCCGAAAGGGGGTCGATATTGAGAACCTACGTGC
CCGC
back to top