mRNA_L-elsbetiae_contig171.4747.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig171.4747.1
Unique NamemRNA_L-elsbetiae_contig171.4747.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig171.4747.1 vs. uniprot
Match: D7FSK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK4_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.360e-25
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 1
Query:   91 DLTSMATALFEANFGSSAGAAIVQAPGRVNLIGEHTDYNGGFVMPLALGKKTVVVGRGSVVPKEQARSAG-ELGATCSPKV 330
            +LT+ ATALFEA+FG S G A+V APGRVNLIGEHTDYNGGFVMPLALGKKTVVVGRGS+VP+E+A SAG  + ++ +P+V
Sbjct:    9 ELTNTATALFEASFGPSDGCAVVFAPGRVNLIGEHTDYNGGFVMPLALGKKTVVVGRGSMVPREKAGSAGCRIISSAAPEV 89          
BLAST of mRNA_L-elsbetiae_contig171.4747.1 vs. uniprot
Match: A0A7S2E1C8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E1C8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.670e-10
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   94 LTSMATALFEANFGSSAGAAIVQAPGRVNLIGEHTDYNGGFVMPLALGKKTVVVGRGSVVPKEQARSAGELGAT 315
            L   A + F A FG     A  QAPGRVNLIGEHTDY GGFV+PLAL K+TVVVG G +VP  +  S   + +T
Sbjct:   41 LLGKAKSTFLAAFGEEPTIA-AQAPGRVNLIGEHTDYTGGFVLPLALEKRTVVVGIGKIVPASEDDSLCSIVST 113          
BLAST of mRNA_L-elsbetiae_contig171.4747.1 vs. uniprot
Match: A0A448Z511_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z511_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.040e-10
Identity = 39/60 (65.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  106 ATALFEANFGSS-----AGAAIVQAPGRVNLIGEHTDYNGGFVMPLALGKKTVVVGRGSV 270
            A ALFE +FGSS     A  AI  APGRVNLIGEHTDY GGFV+P A+   TVV GRG V
Sbjct:   79 AEALFERHFGSSDFPSDATRAIAVAPGRVNLIGEHTDYTGGFVLPFAIDYSTVVYGRGKV 138          
BLAST of mRNA_L-elsbetiae_contig171.4747.1 vs. uniprot
Match: A0A3Q2XT66_HIPCM (Galactokinase 1 n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2XT66_HIPCM)

HSP 1 Score: 67.4 bits (163), Expect = 1.320e-9
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   64 MAVSSSSSGDLTSMATALFEANFGSSAGAAIVQAPGRVNLIGEHTDYNGGFVMPLALGKKTVVVGRGSVVPKEQARSAGE 303
            MA    S G L S AT+LF+  F   A    V APGRVNLIGEHTDYN G+V+P+AL   TVVVG  S  P+    +A E
Sbjct:    1 MAAPVPSLGQLVSEATSLFKQMFDDEAPQFAVCAPGRVNLIGEHTDYNQGYVLPMALPLVTVVVGSASSDPEATIVTASE 80          
BLAST of mRNA_L-elsbetiae_contig171.4747.1 vs. uniprot
Match: A0A8J6YEQ1_9BACT (Galactokinase (Fragment) n=1 Tax=Candidatus Sulfomarinibacter sp. MAG AM1 TaxID=2886019 RepID=A0A8J6YEQ1_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 2.110e-9
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   94 LTSMATALFEANFGSSAGAAIVQAPGRVNLIGEHTDYNGGFVMPLALGKKTVVVGR 261
            +T  A  LF  +FG   GA + +APGR+NLIG+HTDYN GFV+P+ + +   VV R
Sbjct:    1 MTERAAKLFAEHFGDPTGAVVARAPGRINLIGDHTDYNDGFVLPMIIDRHVEVVAR 56          
BLAST of mRNA_L-elsbetiae_contig171.4747.1 vs. uniprot
Match: A0A7S1XDZ9_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDZ9_9RHOD)

HSP 1 Score: 66.6 bits (161), Expect = 2.370e-9
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  115 LFEANFGSSAGAAIVQAPGRVNLIGEHTDYNGGFVMPLALGKKTVVVGRGSVVPKEQARSAGE 303
            LF+A FG     A   APGRVN+IGEHTDYN GFV+P+AL + TVVVGR +      +R+ GE
Sbjct:   54 LFQATFGGEPEIA-ASAPGRVNIIGEHTDYNDGFVLPMALSRSTVVVGRRASPETSLSRAVGE 115          
BLAST of mRNA_L-elsbetiae_contig171.4747.1 vs. uniprot
Match: UPI001F07AE05 (galactokinase isoform X1 n=3 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F07AE05)

HSP 1 Score: 66.6 bits (161), Expect = 2.550e-9
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   91 DLTSMATALFEANFGSSAGAAIVQAPGRVNLIGEHTDYNGGFVMPLALGKKTVVVG 258
            DL + A ++FE NFG       V APGRVNLIGEHTDYN GFV+P+AL   TVVVG
Sbjct:   10 DLVAEARSVFEQNFGGDGPEVAVCAPGRVNLIGEHTDYNRGFVLPMALPLVTVVVG 65          
BLAST of mRNA_L-elsbetiae_contig171.4747.1 vs. uniprot
Match: A0A7S1GFP4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GFP4_CYCTE)

HSP 1 Score: 66.2 bits (160), Expect = 3.510e-9
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   85 SGDLTSMAT---ALFEANFGSSAGAAIVQAPGRVNLIGEHTDYNGGFVMPLALGKKTVVVGRGSVV 273
            S DL S+ T    L++ +FGS+    I  APGRVNLIGEH DY GGFV PLA+   T++ G GSVV
Sbjct:   34 SADLQSLVTEAKGLYKRHFGSNDSTVITVAPGRVNLIGEHVDYTGGFVFPLAIEFSTIIYGSGSVV 99          
BLAST of mRNA_L-elsbetiae_contig171.4747.1 vs. uniprot
Match: D8LNE1_ECTSI (Galactokinase (Galactose kinase) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE1_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.050e-9
Identity = 39/80 (48.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   88 GDLTSMATALFEANFGSSAGAAIVQA---PGRVNLIGEHTDYNGGFVMPLALGKKTVVVGRGSVVPKEQARSAGELGATC 318
            G+L  MA  L++  FG       V A   PGRVNLIGEHTDY GGFV+PLAL + TVV G G +V  ++A + G     C
Sbjct:  211 GELLVMARDLYDDTFGPPEDVRHVSAGYAPGRVNLIGEHTDYQGGFVLPLALERGTVVYGVGRLVDSDEATAEGSDRGLC 290          
BLAST of mRNA_L-elsbetiae_contig171.4747.1 vs. uniprot
Match: A0A7S2JYB0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JYB0_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.200e-9
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   91 DLTSMATALFEANFGSSAGAAI--VQAPGRVNLIGEHTDYNGGFVMPLALGKKTVVVGRGSVVPK 279
            +LT  A AL+E +F +     I  V APGRVNLIGEH DY GGFV P+A+   TVV G  ++ PK
Sbjct:    6 ELTQEAQALYEKHFSTDGSGKIMCVMAPGRVNLIGEHVDYTGGFVFPIAISFATVVYGTLTLTPK 70          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig171.4747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSK4_ECTSI2.360e-2572.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2E1C8_9STRA1.670e-1055.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A448Z511_9STRA6.040e-1065.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A3Q2XT66_HIPCM1.320e-952.50Galactokinase 1 n=1 Tax=Hippocampus comes TaxID=10... [more]
A0A8J6YEQ1_9BACT2.110e-950.00Galactokinase (Fragment) n=1 Tax=Candidatus Sulfom... [more]
A0A7S1XDZ9_9RHOD2.370e-955.56Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
UPI001F07AE052.550e-962.50galactokinase isoform X1 n=3 Tax=Hypomesus transpa... [more]
A0A7S1GFP4_CYCTE3.510e-954.55Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
D8LNE1_ECTSI4.050e-948.75Galactokinase (Galactose kinase) n=2 Tax=Ectocarpu... [more]
A0A7S2JYB0_9STRA4.200e-952.31Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig171contigL-elsbetiae_contig171:23810..24448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue8.8e-23
Seed eggNOG ortholog2880.D7FSK4
Preferred nameGALK1
KEGG rclassRC00002,RC00078
KEGG koko:K00849
KEGG ReactionR01092
KEGG Pathwayko00052,ko00520,ko01100,map00052,map00520,map01100
KEGG ModuleM00554,M00632
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004335,GO:0005488,GO:0005524,GO:0005534,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006012,GO:0006059,GO:0006066,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019200,GO:0019318,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019388,GO:0019400,GO:0019402,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019751,GO:0019752,GO:0030246,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033499,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035639,GO:0036094,GO:0042866,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046835,GO:0046939,GO:0048029,GO:0051186,GO:0051188,GO:0055086,GO:0061615,GO:0061620,GO:0061622,GO:0061623,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615
EggNOG free text desc.galactokinase activity
EggNOG OGsCOG0153@1,KOG0631@2759
Ec32 ortholog descriptionGalactokinase
Ec32 orthologEc-04_000280.1
EC2.7.1.6
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size639
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig171.4747.1prot_L-elsbetiae_contig171.4747.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig171 23873..24256 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.8266878-UTR-L-elsbetiae_contig171:23809..238721622815712.8266878-UTR-L-elsbetiae_contig171:23809..23872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig171 23810..23872 +
1691683053.9375732-UTR-L-elsbetiae_contig171:23809..238721691683053.9375732-UTR-L-elsbetiae_contig171:23809..23872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig171 23810..23872 +
1622815712.853574-UTR-L-elsbetiae_contig171:24256..244481622815712.853574-UTR-L-elsbetiae_contig171:24256..24448Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig171 24257..24448 +
1691683053.957369-UTR-L-elsbetiae_contig171:24256..244481691683053.957369-UTR-L-elsbetiae_contig171:24256..24448Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig171 24257..24448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.8419347-CDS-L-elsbetiae_contig171:23872..242561622815712.8419347-CDS-L-elsbetiae_contig171:23872..24256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 23873..24256 +
1691683053.949216-CDS-L-elsbetiae_contig171:23872..242561691683053.949216-CDS-L-elsbetiae_contig171:23872..24256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig171 23873..24256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig171.4747.1

>prot_L-elsbetiae_contig171.4747.1 ID=prot_L-elsbetiae_contig171.4747.1|Name=mRNA_L-elsbetiae_contig171.4747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MAVSSSSSGDLTSMATALFEANFGSSAGAAIVQAPGRVNLIGEHTDYNGG
FVMPLALGKKTVVVGRGSVVPKEQARSAGELGATCSPKVRGQLVNFVRRL
DTYMGGETLSKAERSQKRDRARGDGRS*
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mRNA from alignment at L-elsbetiae_contig171:23810..24448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig171.4747.1 ID=mRNA_L-elsbetiae_contig171.4747.1|Name=mRNA_L-elsbetiae_contig171.4747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=639bp|location=Sequence derived from alignment at L-elsbetiae_contig171:23810..24448+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGTCTCTTTGAAAACCCTTCCCGCCCACTGCCAACCTACGTCAAACCA TATAGAAGGAAAAATGGCTGTGTCTTCTTCTTCTAGCGGGGATCTTACGA GCATGGCCACGGCCCTGTTCGAAGCTAATTTTGGCTCGAGTGCAGGTGCT GCCATTGTACAGGCTCCTGGCAGGGTAAACCTCATCGGCGAGCACACGGA CTACAATGGCGGGTTCGTCATGCCGCTGGCGCTGGGGAAAAAGACTGTTG TTGTTGGCCGAGGGTCAGTCGTGCCCAAGGAGCAGGCGAGGTCTGCTGGT GAGTTGGGCGCCACATGTTCCCCAAAAGTCAGAGGGCAACTTGTCAACTT TGTCAGGAGACTAGATACGTACATGGGCGGCGAGACACTTTCGAAGGCGG AAAGATCACAGAAGAGAGATAGAGCGAGAGGGGACGGGAGGAGTTGAAAA CGGCACAAAATACACAACAAACACCGCTCTCACCCCAACCCGTACGCATG CGGGGGTCGCTCTATGTAGATATGTAGATATGCTGTGCTCCTGACTAAAC GGTAGGATGTAACGTCACTCTCTCTTCCGACGATGTATCACGCAAGGACC GCAGTAGTGCACCAACCGTGGAACAGCAGTAAACTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig171:23810..24448+

>mRNA_L-elsbetiae_contig171.4747.1 ID=mRNA_L-elsbetiae_contig171.4747.1|Name=mRNA_L-elsbetiae_contig171.4747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig171:23810..24448+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGTGTCTTCTTCTTCTAGCGGGGATCTTACGAGCATGGCCACGGC
CCTGTTCGAAGCTAATTTTGGCTCGAGTGCAGGTGCTGCCATTGTACAGG
CTCCTGGCAGGGTAAACCTCATCGGCGAGCACACGGACTACAATGGCGGG
TTCGTCATGCCGCTGGCGCTGGGGAAAAAGACTGTTGTTGTTGGCCGAGG
GTCAGTCGTGCCCAAGGAGCAGGCGAGGTCTGCTGGTGAGTTGGGCGCCA
CATGTTCCCCAAAAGTCAGAGGGCAACTTGTCAACTTTGTCAGGAGACTA
GATACGTACATGGGCGGCGAGACACTTTCGAAGGCGGAAAGATCACAGAA
GAGAGATAGAGCGAGAGGGGACGGGAGGAGTTGAATGGCTGTGTCTTCTT
CTTCTAGCGGGGATCTTACGAGCATGGCCACGGCCCTGTTCGAAGCTAAT
TTTGGCTCGAGTGCAGGTGCTGCCATTGTACAGGCTCCTGGCAGGGTAAA
CCTCATCGGCGAGCACACGGACTACAATGGCGGGTTCGTCATGCCGCTGG
CGCTGGGGAAAAAGACTGTTGTTGTTGGCCGAGGGTCAGTCGTGCCCAAG
GAGCAGGCGAGGTCTGCTGGTGAGTTGGGCGCCACATGTTCCCCAAAAGT
CAGAGGGCAACTTGTCAACTTTGTCAGGAGACTAGATACGTACATGGGCG
GCGAGACACTTTCGAAGGCGGAAAGATCACAGAAGAGAGATAGAGCGAGA
GGGGACGGGAGGAGTTGA
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